Wall clock time and date at job start Tue Mar 31 2020 05:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.53544 * 2 1 4 4 C 1.53124 * 109.49998 * 239.90301 * 2 1 3 5 5 C 1.53124 * 109.15885 * 297.71020 * 4 2 1 6 6 C 1.53038 * 109.31075 * 302.32810 * 5 4 2 7 7 N 1.46925 * 109.47989 * 59.16247 * 6 5 4 8 8 C 1.46900 * 110.98635 * 174.18065 * 7 6 5 9 9 C 1.52996 * 109.47308 * 56.38083 * 8 7 6 10 10 C 1.52997 * 109.46876 * 180.02562 * 9 8 7 11 11 C 1.52998 * 109.47735 * 59.99918 * 10 9 8 12 12 C 1.50701 * 109.47012 * 59.99905 * 11 10 9 13 13 H 1.07996 * 119.99885 * 240.00159 * 12 11 10 14 14 C 1.37880 * 120.00028 * 60.00299 * 12 11 10 15 15 N 1.31516 * 119.99801 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99730 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47577 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47187 * 120.00325 * 16 14 12 19 19 H 1.48499 * 109.47087 * 239.99619 * 16 14 12 20 20 C 1.52996 * 109.47005 * 300.00003 * 11 10 9 21 21 C 1.53003 * 109.47218 * 59.99830 * 20 11 10 22 22 C 1.46844 * 111.21974 * 298.28084 * 7 6 5 23 23 H 1.09005 * 109.46471 * 301.72438 * 22 7 6 24 24 C 1.53004 * 109.46387 * 181.75950 * 22 7 6 25 25 O 1.42898 * 109.47118 * 185.33025 * 24 22 7 26 26 H 1.08999 * 109.46754 * 186.27219 * 1 2 3 27 27 H 1.09000 * 109.46846 * 306.26326 * 1 2 3 28 28 H 1.08994 * 109.46966 * 66.27092 * 1 2 3 29 29 H 1.09004 * 109.51914 * 177.81086 * 4 2 1 30 30 H 1.08991 * 109.52595 * 57.61932 * 4 2 1 31 31 H 1.08998 * 109.49971 * 62.29079 * 5 4 2 32 32 H 1.08994 * 109.49797 * 182.36757 * 5 4 2 33 33 H 1.09000 * 109.46190 * 179.21893 * 6 5 4 34 34 H 1.09000 * 109.46523 * 299.18172 * 6 5 4 35 35 H 1.08997 * 109.46916 * 176.38533 * 8 7 6 36 36 H 1.09002 * 109.46815 * 299.99965 * 9 8 7 37 37 H 1.09000 * 109.47227 * 60.00244 * 9 8 7 38 38 H 1.09004 * 109.47471 * 299.99627 * 10 9 8 39 39 H 1.09003 * 109.47404 * 180.02562 * 10 9 8 40 40 H 1.08993 * 109.47434 * 180.02562 * 11 10 9 41 41 H 0.97001 * 119.99263 * 179.97438 * 15 14 12 42 42 H 1.09006 * 109.47299 * 299.99952 * 20 11 10 43 43 H 1.09000 * 109.47227 * 179.97438 * 20 11 10 44 44 H 1.09002 * 109.47089 * 180.02562 * 21 20 11 45 45 H 1.08997 * 109.46886 * 59.99623 * 21 20 11 46 46 H 1.08996 * 109.47188 * 305.33108 * 24 22 7 47 47 H 1.09003 * 109.46990 * 65.32724 * 24 22 7 48 48 H 0.96700 * 114.00199 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8945 1.0272 0.0000 4 6 2.0412 -0.7238 -1.2488 5 6 1.5749 -2.1818 -1.2107 6 6 2.0847 -2.8429 0.0719 7 7 1.5676 -2.1135 1.2379 8 6 1.9224 -2.7996 2.4874 9 6 3.4407 -2.9738 2.5602 10 6 3.8101 -3.6889 3.8614 11 6 3.1369 -5.0623 3.8975 12 6 3.6054 -5.8824 2.7231 13 1 2.8916 -6.2432 1.9975 14 6 4.9453 -6.1720 2.5752 15 7 5.8145 -5.7322 3.4587 16 14 5.5260 -7.1879 1.1191 17 1 4.3601 -7.5577 0.2770 18 1 6.4873 -6.3933 0.3131 19 1 6.1923 -8.4209 1.6101 20 6 1.6187 -4.8882 3.8247 21 6 1.2491 -4.1731 2.5235 22 6 2.0410 -0.7235 1.2480 23 1 3.1309 -0.7110 1.2544 24 6 1.5160 -0.0153 2.4986 25 8 1.8716 1.3678 2.4473 26 1 -0.3633 -1.0215 0.1123 27 1 -0.3633 0.6079 0.8286 28 1 -0.3633 0.4135 -0.9407 29 1 3.1305 -0.6902 -1.2690 30 1 1.6442 -0.2376 -2.1398 31 1 0.4857 -2.2161 -1.2298 32 1 1.9710 -2.7131 -2.0761 33 1 1.7424 -3.8771 0.1082 34 1 3.1744 -2.8205 0.0838 35 1 1.5836 -2.2061 3.3365 36 1 3.7794 -3.5673 1.7110 37 1 3.9204 -1.9953 2.5342 38 1 3.4713 -3.0958 4.7109 39 1 4.8918 -3.8126 3.9136 40 1 3.3997 -5.5715 4.8246 41 1 6.7571 -5.9363 3.3547 42 1 1.2798 -4.2950 4.6741 43 1 1.1390 -5.8666 3.8499 44 1 0.1675 -4.0486 2.4718 45 1 1.5880 -4.7662 1.6741 46 1 0.4310 -0.1101 2.5414 47 1 1.9558 -0.4709 3.3858 48 1 1.5706 1.8798 3.2104 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173331513.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:27 Heat of formation + Delta-G solvation = -69.608476 kcal Electronic energy + Delta-G solvation = -24789.275332 eV Core-core repulsion = 21649.848677 eV Total energy + Delta-G solvation = -3139.426654 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.07765 -37.37182 -36.27771 -33.81752 -31.85317 -31.79792 -29.54201 -28.41175 -27.05427 -25.58716 -24.72092 -23.37198 -21.67897 -21.21127 -20.09264 -18.64687 -17.87897 -17.34955 -15.93650 -15.67228 -15.42486 -14.75943 -14.38560 -14.22714 -13.99003 -13.60286 -13.33794 -13.17286 -12.98029 -12.78240 -12.59208 -12.01406 -11.74798 -11.68752 -11.41035 -11.24577 -11.10875 -11.00457 -10.89320 -10.79246 -10.57953 -10.47348 -10.32681 -10.15780 -9.95374 -9.80308 -9.70948 -9.49077 -9.11828 -8.92043 -8.61951 -8.28283 -7.66038 -5.95563 -3.99632 3.28422 3.37604 3.40226 3.96506 4.44814 4.63309 4.94129 4.97962 5.10030 5.28159 5.35126 5.44888 5.50683 5.60695 5.62905 5.70198 5.79975 5.81693 5.91987 5.98874 6.03214 6.10283 6.13482 6.15316 6.27274 6.29657 6.34547 6.39658 6.49710 6.53479 6.55980 6.57104 6.69386 6.78161 6.79319 6.89350 7.12279 7.18818 7.40687 7.52472 7.55851 7.65575 7.69606 7.77700 7.96836 8.17965 8.50902 9.03167 9.63479 11.10280 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.019708 B = 0.005980 C = 0.005343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.386031 B = 4681.024847 C = 5238.827608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.076 4.076 3 H 0.073 0.927 4 C -0.117 4.117 5 C -0.118 4.118 6 C 0.053 3.947 7 N -0.523 5.523 8 C 0.085 3.915 9 C -0.129 4.129 10 C -0.103 4.103 11 C 0.043 3.957 12 C -0.497 4.497 13 H 0.055 0.945 14 C 0.060 3.940 15 N -0.891 5.891 16 Si 0.881 3.119 17 H -0.273 1.273 18 H -0.286 1.286 19 H -0.285 1.285 20 C -0.106 4.106 21 C -0.096 4.096 22 C 0.092 3.908 23 H 0.046 0.954 24 C 0.080 3.920 25 O -0.573 6.573 26 H 0.071 0.929 27 H 0.047 0.953 28 H 0.041 0.959 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.083 0.917 34 H 0.040 0.960 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.028 0.972 38 H 0.011 0.989 39 H 0.089 0.911 40 H 0.023 0.977 41 H 0.257 0.743 42 H 0.032 0.968 43 H 0.046 0.954 44 H 0.043 0.957 45 H 0.071 0.929 46 H 0.054 0.946 47 H 0.048 0.952 48 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.262 11.062 -4.689 15.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.095 4.095 3 H 0.091 0.909 4 C -0.155 4.155 5 C -0.156 4.156 6 C -0.074 4.074 7 N -0.248 5.248 8 C -0.023 4.023 9 C -0.168 4.168 10 C -0.142 4.142 11 C 0.025 3.975 12 C -0.535 4.535 13 H 0.073 0.927 14 C -0.140 4.140 15 N -0.531 5.531 16 Si 0.709 3.291 17 H -0.198 1.198 18 H -0.212 1.212 19 H -0.212 1.212 20 C -0.145 4.145 21 C -0.133 4.133 22 C -0.017 4.017 23 H 0.064 0.936 24 C 0.002 3.998 25 O -0.378 6.378 26 H 0.090 0.910 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.101 0.899 34 H 0.058 0.942 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.047 0.953 38 H 0.030 0.970 39 H 0.107 0.893 40 H 0.041 0.959 41 H 0.067 0.933 42 H 0.050 0.950 43 H 0.065 0.935 44 H 0.061 0.939 45 H 0.089 0.911 46 H 0.072 0.928 47 H 0.066 0.934 48 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -9.323 10.887 -5.268 15.271 hybrid contribution 1.212 -0.434 -0.130 1.294 sum -8.112 10.453 -5.399 14.290 Atomic orbital electron populations 1.21765 0.94989 1.02625 1.00057 1.21044 0.96399 0.98622 0.93396 0.90862 1.21645 1.00283 0.96057 0.97489 1.21641 1.01520 0.95308 0.97092 1.22123 0.97971 0.98139 0.89216 1.62197 1.59140 1.00431 1.03074 1.21824 0.95262 0.95041 0.90150 1.21978 0.94697 0.98211 1.01908 1.21446 1.04070 0.96107 0.92556 1.18692 0.88728 0.92954 0.97158 1.21171 0.92105 1.31439 1.08834 0.92701 1.24936 0.97077 0.95977 0.96000 1.69883 1.02049 1.45935 1.35192 0.86711 0.78823 0.80329 0.83230 1.19805 1.21231 1.21163 1.21550 0.99802 0.98007 0.95097 1.21444 0.97543 0.94567 0.99769 1.21379 0.97551 0.88909 0.93853 0.93602 1.22263 0.98940 0.81033 0.97587 1.86413 1.81982 1.21023 1.48337 0.91047 0.93420 0.93983 0.92526 0.92319 0.91222 0.92133 0.89882 0.94202 0.91358 0.90664 0.95281 0.97045 0.89297 0.95911 0.93281 0.94952 0.93474 0.93869 0.91081 0.92765 0.93388 0.77794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 8.10 37.16 0.30 -1.35 16 2 C -0.08 -1.00 2.53 -90.53 -0.23 -1.23 16 3 H 0.07 1.00 7.58 -51.93 -0.39 0.61 16 4 C -0.12 -1.48 5.51 -26.60 -0.15 -1.63 16 5 C -0.12 -1.55 5.74 -26.65 -0.15 -1.70 16 6 C 0.05 0.84 4.59 -3.79 -0.02 0.83 16 7 N -0.52 -8.19 3.63 -218.69 -0.79 -8.98 16 8 C 0.08 1.50 1.88 -67.71 -0.13 1.37 16 9 C -0.13 -2.66 4.27 -26.73 -0.11 -2.77 16 10 C -0.10 -2.39 5.23 -26.73 -0.14 -2.53 16 11 C 0.04 1.04 2.59 -91.77 -0.24 0.80 16 12 C -0.50 -12.96 6.61 -34.44 -0.23 -13.19 16 13 H 0.05 1.43 6.71 -52.49 -0.35 1.08 16 14 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 15 N -0.89 -25.11 11.32 55.43 0.63 -24.48 16 16 Si 0.88 21.02 29.54 -169.99 -5.02 16.00 16 17 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 C -0.11 -2.16 5.41 -26.73 -0.14 -2.30 16 21 C -0.10 -1.77 4.85 -26.73 -0.13 -1.90 16 22 C 0.09 1.37 1.54 -67.72 -0.10 1.26 16 23 H 0.05 0.79 6.81 -51.93 -0.35 0.44 16 24 C 0.08 1.07 5.41 37.16 0.20 1.27 16 25 O -0.57 -7.12 12.78 -35.23 -0.45 -7.57 16 26 H 0.07 0.93 6.16 -51.93 -0.32 0.61 16 27 H 0.05 0.56 6.91 -51.93 -0.36 0.20 16 28 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.89 6.73 -51.93 -0.35 0.54 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.08 1.39 6.13 -51.93 -0.32 1.07 16 34 H 0.04 0.71 6.59 -51.93 -0.34 0.36 16 35 H 0.07 1.18 5.88 -51.93 -0.31 0.88 16 36 H 0.07 1.73 5.55 -51.93 -0.29 1.44 16 37 H 0.03 0.58 6.74 -51.93 -0.35 0.23 16 38 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 39 H 0.09 2.34 6.07 -51.93 -0.32 2.03 16 40 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 42 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.07 1.43 4.84 -51.93 -0.25 1.18 16 46 H 0.05 0.69 6.87 -51.93 -0.36 0.34 16 47 H 0.05 0.69 6.48 -51.93 -0.34 0.35 16 48 H 0.38 2.93 9.12 45.56 0.42 3.35 16 LS Contribution 334.91 15.07 5.05 5.05 Total: -1.00 -27.70 334.91 -9.47 -37.17 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -7.52 Total: 4.34 kcal Atomic # 6 Polarization: -20.17 SS G_CDS: -1.36 Total: -21.54 kcal Atomic # 7 Polarization: -33.29 SS G_CDS: -0.17 Total: -33.46 kcal Atomic # 8 Polarization: -7.12 SS G_CDS: -0.45 Total: -7.57 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -27.70 -9.47 -37.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173331513.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.438 kcal (2) G-P(sol) polarization free energy of solvation -27.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds