Wall clock time and date at job start Tue Mar 31 2020 05:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.49892 * 2 1 4 4 C 1.53036 * 109.50378 * 120.11665 * 2 1 3 5 5 N 1.46841 * 109.52379 * 179.12528 * 4 2 1 6 6 C 1.46895 * 111.00090 * 174.16287 * 5 4 2 7 7 C 1.53009 * 109.47367 * 183.16039 * 6 5 4 8 8 C 1.52991 * 109.47331 * 179.97438 * 7 6 5 9 9 C 1.53005 * 109.47027 * 60.00083 * 8 7 6 10 10 C 1.50697 * 109.46941 * 59.99849 * 9 8 7 11 11 H 1.07992 * 120.00028 * 239.99801 * 10 9 8 12 12 C 1.37881 * 120.00194 * 60.00369 * 10 9 8 13 13 N 1.31516 * 119.99524 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 120.00244 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.47025 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.47200 * 119.99500 * 14 12 10 17 17 H 1.48499 * 109.47203 * 239.99707 * 14 12 10 18 18 C 1.52999 * 109.47044 * 299.99725 * 9 8 7 19 19 C 1.52992 * 109.47479 * 63.16122 * 6 5 4 20 20 C 1.46854 * 111.19557 * 298.25734 * 5 4 2 21 21 C 1.53035 * 109.52443 * 61.73997 * 20 5 4 22 22 C 1.53115 * 109.28188 * 300.82330 * 21 20 5 23 23 C 1.53001 * 109.57789 * 177.58968 * 22 21 20 24 24 O 1.42898 * 109.51979 * 297.75106 * 22 21 20 25 25 H 1.09001 * 109.47002 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.46955 * 300.08218 * 1 2 3 27 27 H 1.09000 * 109.47050 * 60.08047 * 1 2 3 28 28 H 1.09005 * 109.46080 * 299.13631 * 4 2 1 29 29 H 1.08997 * 109.46170 * 59.10545 * 4 2 1 30 30 H 1.08999 * 109.47013 * 303.15422 * 6 5 4 31 31 H 1.08994 * 109.46667 * 300.00120 * 7 6 5 32 32 H 1.09001 * 109.46850 * 59.99591 * 7 6 5 33 33 H 1.08997 * 109.47401 * 300.00345 * 8 7 6 34 34 H 1.08996 * 109.47385 * 180.02562 * 8 7 6 35 35 H 1.09005 * 109.47060 * 180.02562 * 9 8 7 36 36 H 0.97000 * 120.00003 * 180.02562 * 13 12 10 37 37 H 1.09003 * 109.47343 * 300.00239 * 18 9 8 38 38 H 1.09001 * 109.46897 * 180.02562 * 18 9 8 39 39 H 1.09007 * 109.47346 * 299.99879 * 19 6 5 40 40 H 1.09003 * 109.47337 * 60.00101 * 19 6 5 41 41 H 1.09006 * 109.45828 * 301.72597 * 20 5 4 42 42 H 1.09001 * 109.45399 * 181.75749 * 20 5 4 43 43 H 1.09002 * 109.50363 * 180.87781 * 21 20 5 44 44 H 1.09007 * 109.53172 * 60.78094 * 21 20 5 45 45 H 1.09006 * 109.46515 * 300.28546 * 23 22 21 46 46 H 1.09002 * 109.46853 * 60.28386 * 23 22 21 47 47 H 1.08994 * 109.47129 * 180.28353 * 23 22 21 48 48 H 0.96704 * 114.00275 * 299.67472 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0410 -0.7238 1.2478 5 7 3.5093 -0.7424 1.2377 6 6 4.0372 -1.3065 2.4870 7 6 5.5657 -1.2369 2.4723 8 6 6.1155 -1.8239 3.7737 9 6 5.6727 -3.2828 3.9023 10 6 6.2002 -4.0729 2.7325 11 1 5.5141 -4.5745 2.0663 12 6 7.5589 -4.1554 2.5128 13 7 8.3944 -3.5442 3.3240 14 14 8.2129 -5.1353 1.0632 15 1 7.0760 -5.7217 0.3089 16 1 8.9892 -4.2387 0.1694 17 1 9.0933 -6.2238 1.5583 18 6 4.1443 -3.3525 3.9171 19 6 3.5945 -2.7654 2.6151 20 6 4.0230 -1.4729 0.0719 21 6 3.5712 -0.7715 -1.2110 22 6 2.0413 -0.7234 -1.2490 23 6 1.5829 0.0296 -2.4996 24 8 1.5222 -2.0545 -1.2759 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5151 0.8892 27 1 -0.3633 0.5126 -0.8907 28 1 1.6906 -0.2029 2.1389 29 1 1.6648 -1.7468 1.2538 30 1 3.6558 -0.7354 3.3334 31 1 5.9471 -1.8080 1.6259 32 1 5.8811 -0.1976 2.3810 33 1 5.7339 -1.2525 4.6198 34 1 7.2043 -1.7740 3.7634 35 1 6.0640 -3.7010 4.8298 36 1 9.3503 -3.6019 3.1693 37 1 3.7627 -2.7809 4.7633 38 1 3.8289 -4.3917 4.0092 39 1 2.5056 -2.8151 2.6256 40 1 3.9760 -3.3366 1.7687 41 1 3.6375 -2.4924 0.0835 42 1 5.1121 -1.4960 0.1091 43 1 3.9396 -1.3227 -2.0762 44 1 3.9678 0.2437 -1.2304 45 1 1.9812 1.0441 -2.4792 46 1 1.9473 -0.4861 -3.3881 47 1 0.4939 0.0672 -2.5223 48 1 1.8060 -2.5719 -2.0420 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173331565.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:29 Heat of formation + Delta-G solvation = -72.457510 kcal Electronic energy + Delta-G solvation = -24554.142109 eV Core-core repulsion = 21414.591912 eV Total energy + Delta-G solvation = -3139.550198 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.06152 -37.97252 -35.35240 -33.43614 -32.09817 -31.48531 -29.68705 -29.05184 -27.37961 -25.85185 -24.44731 -22.51105 -22.33223 -21.37191 -19.92351 -19.41356 -18.31749 -16.16470 -15.70800 -15.61594 -15.11153 -14.79532 -14.59670 -14.46137 -13.84569 -13.79233 -13.19615 -13.05087 -12.90404 -12.59581 -12.31607 -12.09680 -11.87757 -11.72373 -11.59270 -11.31381 -11.24699 -11.05866 -10.99759 -10.94034 -10.78510 -10.59928 -10.48535 -10.21408 -10.00931 -9.90318 -9.69183 -9.38769 -9.14848 -8.81061 -8.56936 -8.22479 -7.62876 -5.92546 -3.96316 3.29919 3.38845 3.41758 4.18587 4.42985 4.47190 4.69778 4.77790 4.89825 5.19376 5.37899 5.42377 5.49709 5.56829 5.59808 5.66344 5.70149 5.74248 5.79611 5.85199 5.91006 5.95697 6.05149 6.09738 6.20920 6.23852 6.31907 6.39330 6.43776 6.48468 6.57979 6.64146 6.70536 6.80744 6.86389 6.92799 7.17559 7.23456 7.47060 7.61235 7.65794 7.70895 7.73759 7.81420 8.01759 8.22969 8.54829 9.06162 9.66359 11.13391 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.021502 B = 0.005489 C = 0.004866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.913503 B = 5099.461988 C = 5752.426181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.070 4.070 3 H 0.083 0.917 4 C 0.061 3.939 5 N -0.534 5.534 6 C 0.093 3.907 7 C -0.091 4.091 8 C -0.107 4.107 9 C 0.043 3.957 10 C -0.496 4.496 11 H 0.053 0.947 12 C 0.061 3.939 13 N -0.890 5.890 14 Si 0.880 3.120 15 H -0.275 1.275 16 H -0.285 1.285 17 H -0.286 1.286 18 C -0.103 4.103 19 C -0.134 4.134 20 C 0.054 3.946 21 C -0.141 4.141 22 C 0.133 3.867 23 C -0.178 4.178 24 O -0.555 6.555 25 H 0.062 0.938 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.065 0.935 29 H 0.044 0.956 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.038 0.962 33 H 0.013 0.987 34 H 0.091 0.909 35 H 0.023 0.977 36 H 0.257 0.743 37 H 0.031 0.969 38 H 0.042 0.958 39 H 0.035 0.965 40 H 0.071 0.929 41 H 0.043 0.957 42 H 0.082 0.918 43 H 0.063 0.937 44 H 0.075 0.925 45 H 0.064 0.936 46 H 0.054 0.946 47 H 0.063 0.937 48 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.517 7.515 -8.816 17.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.089 4.089 3 H 0.101 0.899 4 C -0.067 4.067 5 N -0.257 5.257 6 C -0.015 4.015 7 C -0.129 4.129 8 C -0.145 4.145 9 C 0.024 3.976 10 C -0.535 4.535 11 H 0.071 0.929 12 C -0.139 4.139 13 N -0.530 5.530 14 Si 0.709 3.291 15 H -0.199 1.199 16 H -0.211 1.211 17 H -0.212 1.212 18 C -0.141 4.141 19 C -0.173 4.173 20 C -0.074 4.074 21 C -0.179 4.179 22 C 0.092 3.908 23 C -0.235 4.235 24 O -0.360 6.360 25 H 0.081 0.919 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.062 0.938 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.056 0.944 33 H 0.032 0.968 34 H 0.109 0.891 35 H 0.041 0.959 36 H 0.067 0.933 37 H 0.050 0.950 38 H 0.061 0.939 39 H 0.053 0.947 40 H 0.090 0.910 41 H 0.061 0.939 42 H 0.101 0.899 43 H 0.082 0.918 44 H 0.093 0.907 45 H 0.083 0.917 46 H 0.073 0.927 47 H 0.082 0.918 48 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -12.442 8.240 -8.272 17.063 hybrid contribution 0.476 -1.537 -1.326 2.085 sum -11.967 6.703 -9.598 16.741 Atomic orbital electron populations 1.21768 0.94944 1.02355 1.01024 1.21125 0.95450 0.99055 0.93282 0.89905 1.22019 0.88635 0.99403 0.96653 1.62258 1.06729 1.53823 1.02888 1.21716 0.96865 0.93024 0.89866 1.21437 0.91881 0.98635 1.00957 1.21501 1.03272 0.96713 0.93017 1.18700 0.88798 0.92968 0.97087 1.21156 0.91198 1.30017 1.11093 0.92899 1.24923 0.97169 0.95684 0.96152 1.69880 1.02321 1.43511 1.37285 0.86716 0.79012 0.80175 0.83203 1.19946 1.21145 1.21185 1.21508 0.99513 0.98246 0.94853 1.22039 0.97506 0.97355 1.00401 1.22038 1.00732 0.95593 0.89002 1.22292 0.95288 1.02192 0.98168 1.21231 0.92307 0.82632 0.94615 1.22520 1.02118 1.01148 0.97714 1.86555 1.74793 1.24830 1.49845 0.91934 0.92974 0.92819 0.91652 0.93770 0.91660 0.91008 0.94367 0.96835 0.89072 0.95920 0.93272 0.94973 0.93887 0.94668 0.91016 0.93878 0.89941 0.91810 0.90651 0.91733 0.92672 0.91777 0.78256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 8.74 37.16 0.32 -1.22 16 2 C -0.07 -0.87 2.22 -90.54 -0.20 -1.07 16 3 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 4 C 0.06 0.90 4.13 -3.84 -0.02 0.89 16 5 N -0.53 -8.83 4.66 -226.69 -1.06 -9.89 16 6 C 0.09 1.74 2.25 -67.71 -0.15 1.59 16 7 C -0.09 -1.93 4.73 -26.73 -0.13 -2.06 16 8 C -0.11 -2.50 5.23 -26.73 -0.14 -2.64 16 9 C 0.04 1.06 2.59 -91.77 -0.24 0.82 16 10 C -0.50 -13.17 6.61 -34.44 -0.23 -13.40 16 11 H 0.05 1.42 6.71 -52.49 -0.35 1.07 16 12 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 13 N -0.89 -25.13 11.32 55.43 0.63 -24.50 16 14 Si 0.88 21.09 29.54 -169.99 -5.02 16.07 16 15 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 16 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 17 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 18 C -0.10 -2.19 5.41 -26.71 -0.14 -2.34 16 19 C -0.13 -2.63 4.29 -26.71 -0.11 -2.75 16 20 C 0.05 0.88 4.52 -3.83 -0.02 0.86 16 21 C -0.14 -1.81 5.08 -26.65 -0.14 -1.95 16 22 C 0.13 1.54 0.67 -90.50 -0.06 1.48 16 23 C -0.18 -1.65 8.53 37.16 0.32 -1.34 16 24 O -0.55 -6.83 11.08 -35.23 -0.39 -7.22 16 25 H 0.06 0.75 7.63 -51.93 -0.40 0.35 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.51 6.50 -51.93 -0.34 0.17 16 28 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 29 H 0.04 0.73 6.30 -51.93 -0.33 0.40 16 30 H 0.07 1.22 8.11 -51.93 -0.42 0.80 16 31 H 0.07 1.66 5.34 -51.93 -0.28 1.38 16 32 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 35 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 37 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.03 0.64 6.60 -51.93 -0.34 0.30 16 40 H 0.07 1.54 5.03 -51.93 -0.26 1.28 16 41 H 0.04 0.76 6.26 -51.93 -0.33 0.44 16 42 H 0.08 1.49 5.98 -51.93 -0.31 1.18 16 43 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.06 0.58 6.50 -51.93 -0.34 0.24 16 48 H 0.37 3.39 9.05 45.56 0.41 3.80 16 LS Contribution 340.28 15.07 5.13 5.13 Total: -1.00 -27.94 340.28 -9.54 -37.47 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -7.80 Total: 4.49 kcal Atomic # 6 Polarization: -20.53 SS G_CDS: -1.03 Total: -21.55 kcal Atomic # 7 Polarization: -33.96 SS G_CDS: -0.43 Total: -34.39 kcal Atomic # 8 Polarization: -6.83 SS G_CDS: -0.39 Total: -7.22 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -27.94 -9.54 -37.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173331565.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.984 kcal (2) G-P(sol) polarization free energy of solvation -27.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds