Wall clock time and date at job start Tue Mar 31 2020 06:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46900 * 110.99937 * 2 1 4 4 C 1.53005 * 109.47173 * 63.77520 * 3 2 1 5 5 C 1.53002 * 109.47151 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.47084 * 59.99413 * 5 4 3 7 7 C 1.50694 * 109.47038 * 179.97438 * 6 5 4 8 8 H 1.08005 * 120.00165 * 119.99985 * 7 6 5 9 9 C 1.37875 * 120.00531 * 300.00425 * 7 6 5 10 10 N 1.31520 * 119.99498 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00737 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.46512 * 59.99883 * 11 9 7 13 13 H 1.48494 * 109.47236 * 179.97438 * 11 9 7 14 14 H 1.48495 * 109.46893 * 300.00533 * 11 9 7 15 15 C 1.53001 * 109.47261 * 300.00306 * 6 5 4 16 16 C 1.52991 * 109.47149 * 303.77291 * 3 2 1 17 17 C 1.46898 * 111.00060 * 236.04536 * 2 1 3 18 18 H 1.08994 * 109.46996 * 65.42912 * 17 2 1 19 19 C 1.52997 * 109.46881 * 185.43422 * 17 2 1 20 20 C 1.53005 * 109.46773 * 179.97438 * 19 17 2 21 21 C 1.53000 * 109.46951 * 299.99740 * 20 19 17 22 22 H 1.08995 * 109.47620 * 299.99733 * 21 20 19 23 23 O 1.42908 * 109.46803 * 180.02562 * 21 20 19 24 24 C 1.52997 * 109.47170 * 60.00503 * 21 20 19 25 25 C 1.53000 * 109.46868 * 305.43177 * 17 2 1 26 26 H 1.08993 * 109.47058 * 183.95416 * 1 2 3 27 27 H 1.09002 * 109.47085 * 303.95771 * 1 2 3 28 28 H 1.08999 * 109.46955 * 63.95092 * 1 2 3 29 29 H 1.08999 * 109.46799 * 183.77176 * 3 2 1 30 30 H 1.09003 * 109.46621 * 299.99886 * 4 3 2 31 31 H 1.08997 * 109.47217 * 59.99534 * 4 3 2 32 32 H 1.08999 * 109.46893 * 299.99700 * 5 4 3 33 33 H 1.08998 * 109.47068 * 179.97438 * 5 4 3 34 34 H 1.08999 * 109.47021 * 60.00365 * 6 5 4 35 35 H 0.97004 * 119.99864 * 180.02562 * 10 9 7 36 36 H 1.08999 * 109.47151 * 299.99979 * 15 6 5 37 37 H 1.09007 * 109.46905 * 180.02562 * 15 6 5 38 38 H 1.09009 * 109.47320 * 299.99606 * 16 3 2 39 39 H 1.09002 * 109.47863 * 60.00199 * 16 3 2 40 40 H 1.08995 * 109.47478 * 60.00428 * 19 17 2 41 41 H 1.08995 * 109.47050 * 299.99395 * 19 17 2 42 42 H 1.09002 * 109.46845 * 179.97438 * 20 19 17 43 43 H 1.08995 * 109.47465 * 59.99836 * 20 19 17 44 44 H 0.96701 * 113.99764 * 60.00290 * 23 21 20 45 45 H 1.09002 * 109.47403 * 179.97438 * 24 21 20 46 46 H 1.08995 * 109.47259 * 59.99896 * 24 21 20 47 47 H 1.09002 * 109.47329 * 60.00235 * 25 17 2 48 48 H 1.08996 * 109.47639 * 300.00205 * 25 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.5831 2.0760 1.2941 5 6 2.1320 3.5042 1.2943 6 6 1.5667 4.2680 0.0952 7 6 2.1068 5.6749 0.0958 8 1 2.6866 6.0311 -0.7428 9 6 1.8608 6.5073 1.1670 10 7 1.1544 6.0737 2.1881 11 14 2.5309 8.2510 1.1682 12 1 1.9827 8.9926 0.0042 13 1 2.1295 8.9347 2.4238 14 1 4.0125 8.2120 1.0769 15 6 1.9791 3.5634 -1.1988 16 6 1.4296 2.1349 -1.1990 17 6 1.9955 -0.7660 -1.1376 18 1 1.7268 -0.2657 -2.0679 19 6 3.5189 -0.8577 -1.0293 20 6 4.0671 -1.6561 -2.2138 21 6 3.4691 -3.0643 -2.2001 22 1 3.7378 -3.5643 -1.2696 23 8 3.9816 -3.8102 -3.3061 24 6 1.9457 -2.9726 -2.3084 25 6 1.3975 -2.1742 -1.1245 26 1 -0.3633 -1.0252 0.0709 27 1 -0.3633 0.5740 0.8524 28 1 -0.3633 0.4513 -0.9233 29 1 3.0830 1.3431 -0.0676 30 1 0.4956 2.1043 1.3616 31 1 1.9862 1.5321 2.1483 32 1 3.2195 3.4755 1.2269 33 1 1.8378 4.0063 2.2160 34 1 0.4792 4.2967 0.1626 35 1 0.9810 6.6595 2.9416 36 1 3.0666 3.5347 -1.2662 37 1 1.5767 4.1079 -2.0531 38 1 1.7235 1.6330 -2.1210 39 1 0.3421 2.1633 -1.1315 40 1 3.7875 -1.3581 -0.0989 41 1 3.9448 0.1455 -1.0386 42 1 5.1525 -1.7211 -2.1369 43 1 3.7985 -1.1563 -3.1444 44 1 4.9436 -3.9086 -3.3021 45 1 1.5197 -3.9758 -2.2992 46 1 1.6771 -2.4728 -3.2390 47 1 0.3122 -2.1089 -1.2017 48 1 1.6661 -2.6745 -0.1942 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173331777.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:37 Heat of formation + Delta-G solvation = -76.896611 kcal Electronic energy + Delta-G solvation = -23642.083494 eV Core-core repulsion = 20502.340803 eV Total energy + Delta-G solvation = -3139.742691 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -39.93656 -38.18468 -36.13914 -34.18608 -32.23193 -31.12211 -29.89643 -28.96871 -28.11089 -25.69190 -23.96509 -22.61427 -22.07333 -21.35995 -20.16073 -19.43785 -18.46466 -17.41875 -16.32761 -15.98821 -15.36386 -14.96953 -14.64188 -14.52126 -13.85860 -13.79882 -13.53770 -13.34138 -12.90155 -12.62153 -12.48668 -12.37344 -12.11575 -11.85647 -11.61956 -11.38906 -11.27756 -11.18894 -11.05341 -10.97762 -10.84413 -10.61582 -10.45581 -10.30608 -10.19848 -10.09248 -9.76077 -9.67668 -9.32374 -8.87341 -8.69474 -8.26032 -7.86027 -5.94729 -4.00848 3.33131 3.37900 3.40497 3.89083 4.20191 4.46420 4.55089 4.57427 5.00277 5.02885 5.11688 5.26357 5.32326 5.34154 5.35992 5.38945 5.52732 5.60184 5.62469 5.72538 5.80875 5.86935 5.90966 5.93418 6.03053 6.06020 6.10392 6.15483 6.24192 6.29837 6.37433 6.46778 6.55368 6.62010 6.75765 6.82827 6.92691 7.13735 7.30288 7.40794 7.42796 7.47188 7.58700 7.79037 8.06141 8.20847 8.51357 9.03096 9.63517 11.10696 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.034317 B = 0.003614 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.737270 B = 7745.364122 C = 8141.214558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.534 5.534 3 C 0.086 3.914 4 C -0.106 4.106 5 C -0.108 4.108 6 C 0.050 3.950 7 C -0.514 4.514 8 H 0.052 0.948 9 C 0.061 3.939 10 N -0.890 5.890 11 Si 0.888 3.112 12 H -0.278 1.278 13 H -0.288 1.288 14 H -0.278 1.278 15 C -0.103 4.103 16 C -0.146 4.146 17 C 0.081 3.919 18 H 0.043 0.957 19 C -0.111 4.111 20 C -0.149 4.149 21 C 0.104 3.896 22 H 0.055 0.945 23 O -0.572 6.572 24 C -0.110 4.110 25 C -0.111 4.111 26 H 0.062 0.938 27 H 0.073 0.927 28 H 0.027 0.973 29 H 0.078 0.922 30 H 0.052 0.948 31 H 0.048 0.952 32 H 0.032 0.968 33 H 0.092 0.908 34 H 0.023 0.977 35 H 0.259 0.741 36 H 0.045 0.955 37 H 0.043 0.957 38 H 0.042 0.958 39 H 0.057 0.943 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.064 0.936 43 H 0.069 0.931 44 H 0.376 0.624 45 H 0.068 0.932 46 H 0.067 0.933 47 H 0.070 0.930 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.756 -17.646 -6.072 18.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.256 5.256 3 C -0.022 4.022 4 C -0.144 4.144 5 C -0.146 4.146 6 C 0.032 3.968 7 C -0.552 4.552 8 H 0.070 0.930 9 C -0.140 4.140 10 N -0.529 5.529 11 Si 0.717 3.283 12 H -0.204 1.204 13 H -0.213 1.213 14 H -0.204 1.204 15 C -0.142 4.142 16 C -0.185 4.185 17 C -0.027 4.027 18 H 0.061 0.939 19 C -0.149 4.149 20 C -0.187 4.187 21 C 0.046 3.954 22 H 0.073 0.927 23 O -0.378 6.378 24 C -0.148 4.148 25 C -0.149 4.149 26 H 0.081 0.919 27 H 0.092 0.908 28 H 0.046 0.954 29 H 0.096 0.904 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.051 0.949 33 H 0.110 0.890 34 H 0.041 0.959 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.076 0.924 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.083 0.917 43 H 0.087 0.913 44 H 0.223 0.777 45 H 0.087 0.913 46 H 0.086 0.914 47 H 0.088 0.912 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.195 -17.849 -5.598 18.835 hybrid contribution 0.683 1.506 -0.578 1.752 sum 2.877 -16.343 -6.177 17.707 Atomic orbital electron populations 1.22476 0.88258 1.01274 1.01162 1.62359 1.07516 1.14329 1.41421 1.21845 0.99143 0.85239 0.95973 1.21669 1.00378 0.97566 0.94748 1.21604 0.97878 0.91388 1.03774 1.18634 0.96142 0.93010 0.89053 1.21205 1.33383 0.97097 1.03495 0.92977 1.24960 0.95164 0.98168 0.95673 1.69870 1.39450 1.35892 1.07728 0.86719 0.79400 0.85037 0.77187 1.20406 1.21346 1.20353 1.21567 0.99245 0.92930 1.00420 1.22192 1.00741 0.98160 0.97389 1.21629 0.94604 0.93601 0.92895 0.93895 1.21551 0.94721 1.00677 0.97938 1.22248 1.00182 0.96446 0.99853 1.21867 0.94499 0.90518 0.88534 0.92698 1.86502 1.26483 1.76069 1.48704 1.21449 0.93246 1.00750 0.99329 1.21612 1.00277 0.94889 0.98146 0.91938 0.90846 0.95443 0.90386 0.92940 0.93296 0.94929 0.88961 0.95934 0.93064 0.93583 0.93793 0.93950 0.92425 0.91078 0.91056 0.91687 0.91272 0.77719 0.91325 0.91422 0.91154 0.90997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 8.22 60.07 0.49 0.71 16 2 N -0.53 -7.65 4.60 -226.91 -1.04 -8.69 16 3 C 0.09 1.43 2.01 -67.71 -0.14 1.30 16 4 C -0.11 -2.03 5.08 -26.73 -0.14 -2.17 16 5 C -0.11 -2.51 4.98 -26.73 -0.13 -2.64 16 6 C 0.05 1.23 2.10 -91.77 -0.19 1.04 16 7 C -0.51 -14.12 8.56 -34.44 -0.29 -14.42 16 8 H 0.05 1.42 7.74 -52.48 -0.41 1.01 16 9 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 10 N -0.89 -25.38 11.32 55.43 0.63 -24.75 16 11 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 14 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 15 C -0.10 -2.15 5.15 -26.70 -0.14 -2.29 16 16 C -0.15 -2.56 4.49 -26.71 -0.12 -2.68 16 17 C 0.08 1.00 1.74 -67.72 -0.12 0.88 16 18 H 0.04 0.58 6.47 -51.93 -0.34 0.25 16 19 C -0.11 -1.28 5.03 -26.73 -0.13 -1.41 16 20 C -0.15 -1.46 5.54 -26.73 -0.15 -1.60 16 21 C 0.10 1.00 3.47 -26.73 -0.09 0.90 16 22 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 23 O -0.57 -5.56 13.32 -35.23 -0.47 -6.03 16 24 C -0.11 -1.09 5.57 -26.76 -0.15 -1.24 16 25 C -0.11 -1.17 4.79 -26.76 -0.13 -1.29 16 26 H 0.06 0.72 6.22 -51.93 -0.32 0.40 16 27 H 0.07 1.06 6.21 -51.93 -0.32 0.74 16 28 H 0.03 0.38 6.47 -51.93 -0.34 0.04 16 29 H 0.08 1.34 5.97 -51.93 -0.31 1.03 16 30 H 0.05 1.03 6.41 -51.93 -0.33 0.70 16 31 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 34 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 36 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.04 0.91 8.14 -51.92 -0.42 0.49 16 38 H 0.04 0.69 6.58 -51.92 -0.34 0.34 16 39 H 0.06 1.04 6.44 -51.93 -0.33 0.70 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.07 0.91 6.27 -51.93 -0.33 0.59 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.38 2.10 9.08 45.56 0.41 2.51 16 45 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.07 0.71 6.33 -51.93 -0.33 0.39 16 48 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 344.41 15.07 5.19 5.19 Total: -1.00 -28.78 344.41 -10.04 -38.82 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -7.81 Total: 2.46 kcal Atomic # 6 Polarization: -21.79 SS G_CDS: -1.52 Total: -23.31 kcal Atomic # 7 Polarization: -33.03 SS G_CDS: -0.42 Total: -33.45 kcal Atomic # 8 Polarization: -5.56 SS G_CDS: -0.47 Total: -6.03 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.78 -10.04 -38.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173331777.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.074 kcal (2) G-P(sol) polarization free energy of solvation -28.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds