Wall clock time and date at job start Tue Mar 31 2020 05:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47015 * 2 1 4 4 O 1.42896 * 109.47132 * 119.99506 * 2 1 3 5 5 C 1.42904 * 113.99965 * 149.99979 * 4 2 1 6 6 H 1.09001 * 110.78317 * 328.21376 * 5 4 2 7 7 C 1.54605 * 110.72152 * 91.45271 * 5 4 2 8 8 C 1.53993 * 105.13719 * 140.31568 * 7 5 4 9 9 N 1.47902 * 107.05959 * 1.22748 * 8 7 5 10 10 C 1.46896 * 111.00146 * 214.15167 * 9 8 7 11 11 C 1.53001 * 109.47314 * 176.25997 * 10 9 8 12 12 C 1.52999 * 109.47477 * 180.02562 * 11 10 9 13 13 C 1.52998 * 109.46753 * 299.99997 * 12 11 10 14 14 C 1.50706 * 109.47108 * 179.97438 * 13 12 11 15 15 H 1.08005 * 119.99593 * 335.05159 * 14 13 12 16 16 C 1.37874 * 120.00128 * 155.04735 * 14 13 12 17 17 N 1.31512 * 119.99951 * 355.54563 * 16 14 13 18 18 Si 1.86804 * 119.99831 * 175.54367 * 16 14 13 19 19 H 1.48498 * 109.47113 * 90.00331 * 18 16 14 20 20 H 1.48498 * 109.46852 * 329.99797 * 18 16 14 21 21 H 1.48502 * 109.46673 * 210.00338 * 18 16 14 22 22 C 1.53004 * 109.47399 * 60.00044 * 13 12 11 23 23 C 1.52999 * 109.47221 * 296.25728 * 10 9 8 24 24 C 1.48535 * 105.82065 * 334.66950 * 9 8 7 25 25 H 1.09000 * 109.47451 * 299.99824 * 1 2 3 26 26 H 1.08996 * 109.47149 * 60.00342 * 1 2 3 27 27 H 1.09005 * 109.47207 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47451 * 240.00176 * 2 1 3 29 29 H 1.09008 * 109.47094 * 300.00159 * 3 2 1 30 30 H 1.08998 * 109.47600 * 59.99796 * 3 2 1 31 31 H 1.08994 * 109.47275 * 180.02562 * 3 2 1 32 32 H 1.08996 * 110.30645 * 21.40745 * 7 5 4 33 33 H 1.09000 * 110.30816 * 259.23347 * 7 5 4 34 34 H 1.08994 * 109.91860 * 241.87471 * 8 7 5 35 35 H 1.09000 * 110.07964 * 120.67014 * 8 7 5 36 36 H 1.08998 * 109.46994 * 56.26030 * 10 9 8 37 37 H 1.09001 * 109.47144 * 59.99544 * 11 10 9 38 38 H 1.09010 * 109.46820 * 300.00284 * 11 10 9 39 39 H 1.08998 * 109.47350 * 179.97438 * 12 11 10 40 40 H 1.09004 * 109.46829 * 59.99553 * 12 11 10 41 41 H 1.08998 * 109.47156 * 299.99837 * 13 12 11 42 42 H 0.96998 * 120.00217 * 5.54192 * 17 16 14 43 43 H 1.08998 * 109.47136 * 59.99780 * 22 13 12 44 44 H 1.08996 * 109.47024 * 179.97438 * 22 13 12 45 45 H 1.08998 * 109.47383 * 300.00064 * 23 10 9 46 46 H 1.08998 * 109.46961 * 59.99958 * 23 10 9 47 47 H 1.09003 * 110.66688 * 157.64475 * 24 9 8 48 48 H 1.08997 * 110.66585 * 280.77090 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6735 1.1668 5 6 3.2660 -1.3244 0.9887 6 1 3.3777 -1.6766 -0.0368 7 6 4.4286 -0.3804 1.3725 8 6 5.4462 -1.2733 2.1063 9 7 4.8980 -2.6470 2.1054 10 6 5.2597 -3.3590 3.3383 11 6 4.5992 -4.7391 3.3428 12 6 4.9753 -5.4805 4.6272 13 6 6.4952 -5.6423 4.6960 14 6 6.8659 -6.3720 5.9615 15 1 6.2069 -6.3390 6.8166 16 6 8.0461 -7.0817 6.0276 17 7 8.8059 -7.1949 4.9602 18 14 8.5659 -7.8822 7.6334 19 1 8.0216 -9.2624 7.6973 20 1 8.0410 -7.0896 8.7742 21 1 10.0484 -7.9309 7.7049 22 6 7.1558 -4.2622 4.6916 23 6 6.7796 -3.5210 3.4065 24 6 3.4249 -2.4951 1.9910 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 3.1299 1.4426 -0.0005 32 1 4.0722 0.4092 2.0339 33 1 4.8784 0.0491 0.4773 34 1 5.5744 -0.9254 3.1312 35 1 6.4037 -1.2553 1.5857 36 1 4.9159 -2.7889 4.2013 37 1 4.9429 -5.3093 2.4797 38 1 3.5163 -4.6237 3.2941 39 1 4.5044 -6.4634 4.6306 40 1 4.6312 -4.9100 5.4900 41 1 6.8393 -6.2126 3.8333 42 1 8.5781 -6.7137 4.1494 43 1 6.8117 -3.6919 5.5544 44 1 8.2385 -4.3776 4.7411 45 1 7.1234 -4.0911 2.5435 46 1 7.2502 -2.5378 3.4033 47 1 2.9739 -3.4048 1.5947 48 1 2.9887 -2.2371 2.9561 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173337580.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:52 Heat of formation + Delta-G solvation = -74.275252 kcal Electronic energy + Delta-G solvation = -23028.485622 eV Core-core repulsion = 19888.856602 eV Total energy + Delta-G solvation = -3139.629021 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -39.83054 -38.29774 -36.45018 -33.37012 -32.53430 -30.67821 -30.21719 -28.32409 -27.70829 -27.22914 -24.01370 -22.13688 -21.96132 -21.62899 -20.53955 -20.12060 -19.03816 -17.08084 -16.71811 -16.33948 -15.40567 -14.96516 -14.50903 -14.04777 -13.99441 -13.68135 -13.48648 -13.32930 -13.19203 -12.90533 -12.73980 -12.60562 -12.40599 -12.33011 -11.79175 -11.62791 -11.44207 -11.34510 -11.12265 -11.05345 -10.95006 -10.69913 -10.59999 -10.45525 -10.24064 -10.14554 -10.06739 -9.72763 -9.34429 -8.99259 -8.38210 -8.27711 -8.19454 -6.27476 -3.97849 3.30801 3.46038 3.49803 3.65322 4.18504 4.50476 4.57634 4.59496 4.64477 4.78614 4.87151 4.92623 5.12783 5.27016 5.29637 5.34546 5.35851 5.44201 5.46783 5.50129 5.61714 5.67965 5.68631 5.80426 5.82624 5.88116 5.90273 5.94490 5.99806 6.07507 6.21070 6.24222 6.31984 6.41058 6.46469 6.72934 6.81809 6.92432 6.94188 7.05731 7.16439 7.21909 7.33903 7.58349 7.75455 8.34616 8.52502 8.97246 9.74300 11.11307 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.046797 B = 0.003032 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.189727 B = 9234.030950 C = 9548.661651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.081 3.919 3 C -0.176 4.176 4 O -0.373 6.373 5 C 0.086 3.914 6 H 0.075 0.925 7 C -0.152 4.152 8 C 0.038 3.962 9 N -0.512 5.512 10 C 0.086 3.914 11 C -0.110 4.110 12 C -0.100 4.100 13 C 0.030 3.970 14 C -0.592 4.592 15 H 0.046 0.954 16 C 0.019 3.981 17 N -0.916 5.916 18 Si 1.067 2.933 19 H -0.289 1.289 20 H -0.290 1.290 21 H -0.285 1.285 22 C -0.105 4.105 23 C -0.108 4.108 24 C 0.042 3.958 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.046 0.954 35 H 0.079 0.921 36 H 0.038 0.962 37 H 0.064 0.936 38 H 0.046 0.954 39 H 0.052 0.948 40 H 0.044 0.956 41 H 0.031 0.969 42 H 0.271 0.729 43 H 0.042 0.958 44 H 0.053 0.947 45 H 0.062 0.938 46 H 0.043 0.957 47 H 0.087 0.913 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.839 15.675 -10.699 22.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.023 3.977 3 C -0.234 4.234 4 O -0.292 6.292 5 C 0.027 3.973 6 H 0.093 0.907 7 C -0.191 4.191 8 C -0.090 4.090 9 N -0.237 5.237 10 C -0.022 4.022 11 C -0.147 4.147 12 C -0.139 4.139 13 C 0.012 3.988 14 C -0.630 4.630 15 H 0.064 0.936 16 C -0.185 4.185 17 N -0.553 5.553 18 Si 0.896 3.104 19 H -0.216 1.216 20 H -0.216 1.216 21 H -0.211 1.211 22 C -0.144 4.144 23 C -0.146 4.146 24 C -0.086 4.086 25 H 0.082 0.918 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.064 0.936 35 H 0.097 0.903 36 H 0.056 0.944 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.062 0.938 41 H 0.049 0.951 42 H 0.082 0.918 43 H 0.061 0.939 44 H 0.072 0.928 45 H 0.081 0.919 46 H 0.062 0.938 47 H 0.105 0.895 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.570 14.399 -10.263 21.132 hybrid contribution -1.281 1.613 -0.173 2.067 sum -12.851 16.013 -10.436 23.032 Atomic orbital electron populations 1.21871 0.93740 1.02757 1.02385 1.22140 0.94882 0.92566 0.88122 1.22370 1.01801 0.96837 1.02363 1.87941 1.36214 1.69545 1.35450 1.23091 0.82907 0.91995 0.99305 0.90718 1.22989 0.96440 0.98722 1.00921 1.22772 0.98414 0.88287 0.99492 1.64823 1.06968 1.14314 1.37586 1.21861 0.97054 0.94836 0.88469 1.21656 0.98138 0.94835 1.00115 1.21530 0.99557 0.98292 0.94481 1.18856 0.90035 0.92112 0.97846 1.22001 1.07312 1.34548 0.99188 0.93559 1.25765 0.93655 0.95973 1.03132 1.70745 1.41007 1.40891 1.02611 0.83584 0.76214 0.76016 0.74611 1.21556 1.21582 1.21118 1.21726 1.00645 0.98180 0.93800 1.21657 0.92980 0.99550 1.00430 1.23133 0.89908 0.97187 0.98335 0.91845 0.91381 0.91932 0.92209 0.91890 0.91889 0.92226 0.90627 0.91150 0.93566 0.90300 0.94445 0.91765 0.93517 0.92946 0.93751 0.95053 0.91755 0.93946 0.92778 0.91887 0.93794 0.89508 0.92845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.56 37.16 0.36 -0.76 16 2 C 0.08 0.70 3.34 -26.73 -0.09 0.61 16 3 C -0.18 -1.33 9.37 37.16 0.35 -0.99 16 4 O -0.37 -4.29 9.74 -35.23 -0.34 -4.64 16 5 C 0.09 0.98 3.50 -24.87 -0.09 0.89 16 6 H 0.07 0.80 7.48 -51.93 -0.39 0.41 16 7 C -0.15 -1.66 5.47 -25.37 -0.14 -1.79 16 8 C 0.04 0.50 5.50 -2.75 -0.02 0.48 16 9 N -0.51 -7.59 5.11 -222.51 -1.14 -8.73 16 10 C 0.09 1.46 1.64 -67.71 -0.11 1.35 16 11 C -0.11 -1.97 5.03 -26.73 -0.13 -2.10 16 12 C -0.10 -2.13 5.18 -26.73 -0.14 -2.27 16 13 C 0.03 0.75 1.82 -91.77 -0.17 0.58 16 14 C -0.59 -16.62 8.31 -34.44 -0.29 -16.91 16 15 H 0.05 1.31 7.81 -52.48 -0.41 0.90 16 16 C 0.02 0.53 5.46 -17.82 -0.10 0.44 16 17 N -0.92 -27.73 13.62 55.43 0.76 -26.97 16 18 Si 1.07 25.47 29.91 -169.99 -5.08 20.39 16 19 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 C -0.10 -2.36 5.19 -26.70 -0.14 -2.50 16 23 C -0.11 -2.03 5.17 -26.71 -0.14 -2.17 16 24 C 0.04 0.57 5.09 -1.90 -0.01 0.56 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.48 7.43 -51.93 -0.39 0.09 16 29 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.46 6.83 -51.93 -0.35 0.11 16 32 H 0.08 0.83 8.07 -51.93 -0.42 0.41 16 33 H 0.07 0.66 7.93 -51.93 -0.41 0.25 16 34 H 0.05 0.62 7.64 -51.93 -0.40 0.23 16 35 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.04 0.67 7.98 -51.93 -0.41 0.25 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 38 H 0.05 0.75 6.91 -51.92 -0.36 0.40 16 39 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 40 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.03 0.85 6.68 -51.93 -0.35 0.50 16 42 H 0.27 8.15 6.67 -40.82 -0.27 7.88 16 43 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 44 H 0.05 1.33 8.14 -51.93 -0.42 0.90 16 45 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 46 H 0.04 0.75 7.28 -51.93 -0.38 0.37 16 47 H 0.09 1.14 7.66 -51.93 -0.40 0.74 16 48 H 0.05 0.76 8.01 -51.93 -0.42 0.35 16 LS Contribution 361.41 15.07 5.45 5.45 Total: -1.00 -29.72 361.41 -10.43 -40.15 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -9.22 Total: -1.07 kcal Atomic # 6 Polarization: -23.73 SS G_CDS: -0.85 Total: -24.58 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: -0.38 Total: -35.70 kcal Atomic # 8 Polarization: -4.29 SS G_CDS: -0.34 Total: -4.64 kcal Atomic # 14 Polarization: 25.47 SS G_CDS: -5.08 Total: 20.39 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.72 -10.43 -40.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173337580.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.121 kcal (2) G-P(sol) polarization free energy of solvation -29.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds