Wall clock time and date at job start Tue Mar 31 2020 05:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47337 * 2 1 4 4 O 1.42905 * 109.46775 * 119.99545 * 2 1 3 5 5 C 1.42900 * 113.99664 * 149.99851 * 4 2 1 6 6 H 1.08998 * 110.64665 * 31.69948 * 5 4 2 7 7 C 1.54597 * 110.72583 * 268.54644 * 5 4 2 8 8 C 1.53994 * 105.14113 * 219.68349 * 7 5 4 9 9 N 1.47901 * 107.05923 * 358.77794 * 8 7 5 10 10 C 1.46896 * 111.00194 * 145.84224 * 9 8 7 11 11 C 1.53006 * 109.47118 * 183.50080 * 10 9 8 12 12 C 1.52998 * 109.46748 * 179.97438 * 11 10 9 13 13 C 1.52997 * 109.47229 * 60.00255 * 12 11 10 14 14 C 1.50694 * 109.47722 * 59.99491 * 13 12 11 15 15 H 1.08000 * 120.00116 * 240.00829 * 14 13 12 16 16 C 1.37883 * 119.99778 * 59.99810 * 14 13 12 17 17 N 1.31509 * 119.99990 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99799 * 180.02562 * 16 14 13 19 19 H 1.48509 * 109.46856 * 90.00408 * 18 16 14 20 20 H 1.48497 * 109.46934 * 209.99956 * 18 16 14 21 21 H 1.48496 * 109.47343 * 330.00527 * 18 16 14 22 22 C 1.53006 * 109.47047 * 299.99561 * 13 12 11 23 23 C 1.52994 * 109.47258 * 63.49758 * 10 9 8 24 24 C 1.48540 * 105.82193 * 25.32671 * 9 8 7 25 25 H 1.08995 * 109.47512 * 300.00528 * 1 2 3 26 26 H 1.09007 * 109.46818 * 60.00285 * 1 2 3 27 27 H 1.09001 * 109.47484 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47512 * 239.99472 * 2 1 3 29 29 H 1.08997 * 109.47008 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47007 * 299.99707 * 3 2 1 31 31 H 1.09000 * 109.47051 * 59.99751 * 3 2 1 32 32 H 1.08992 * 110.30767 * 338.60252 * 7 5 4 33 33 H 1.09005 * 110.30703 * 100.67077 * 7 5 4 34 34 H 1.08995 * 109.91260 * 118.12807 * 8 7 5 35 35 H 1.08997 * 109.91974 * 239.22303 * 8 7 5 36 36 H 1.09006 * 109.46750 * 303.49521 * 10 9 8 37 37 H 1.08997 * 109.46707 * 299.99475 * 11 10 9 38 38 H 1.08996 * 109.46893 * 59.99647 * 11 10 9 39 39 H 1.08996 * 109.47316 * 299.99885 * 12 11 10 40 40 H 1.09006 * 109.46689 * 179.97438 * 12 11 10 41 41 H 1.09004 * 109.47218 * 179.97438 * 13 12 11 42 42 H 0.97003 * 119.99817 * 179.97438 * 17 16 14 43 43 H 1.09009 * 109.46560 * 300.00147 * 22 13 12 44 44 H 1.08992 * 109.47275 * 180.02562 * 22 13 12 45 45 H 1.09006 * 109.47126 * 300.00009 * 23 10 9 46 46 H 1.08996 * 109.46942 * 60.00205 * 23 10 9 47 47 H 1.08997 * 110.67036 * 202.36383 * 24 9 8 48 48 H 1.09003 * 110.66548 * 79.22496 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0062 -0.6736 1.1669 5 6 3.2659 -1.3245 0.9888 6 1 3.8812 -0.7811 0.2717 7 6 3.0657 -2.7897 0.5382 8 6 4.1330 -3.5949 1.3024 9 7 4.9079 -2.6295 2.1117 10 6 5.3326 -3.2299 3.3833 11 6 6.0539 -2.1778 4.2282 12 6 6.4957 -2.8030 5.5529 13 6 7.4438 -3.9711 5.2745 14 6 8.6529 -3.4698 4.5276 15 1 8.8837 -3.8622 3.5483 16 6 9.4644 -2.5100 5.0946 17 7 9.1835 -2.0324 6.2873 18 14 10.9627 -1.8881 4.1685 19 1 10.5805 -0.7183 3.3373 20 1 12.0118 -1.4842 5.1388 21 1 11.4868 -2.9671 3.2933 22 6 6.7225 -5.0232 4.4295 23 6 6.2808 -4.3977 3.1044 24 6 4.0011 -1.4762 2.3442 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 2.0673 -3.1349 0.8065 33 1 3.2200 -2.8793 -0.5371 34 1 3.6518 -4.3240 1.9542 35 1 4.7896 -4.1041 0.5970 36 1 4.4583 -3.5928 3.9237 37 1 6.9282 -1.8149 3.6879 38 1 5.3783 -1.3459 4.4269 39 1 5.6212 -3.1657 6.0931 40 1 7.0100 -2.0536 6.1547 41 1 7.7589 -4.4162 6.2182 42 1 9.7546 -1.3575 6.6863 43 1 5.8480 -5.3858 4.9698 44 1 7.3978 -5.8555 4.2315 45 1 5.7669 -5.1472 2.5024 46 1 7.1551 -4.0347 2.5640 47 1 4.5732 -0.5773 2.5742 48 1 3.2934 -1.6981 3.1430 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173337581.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:57 Heat of formation + Delta-G solvation = -65.563994 kcal Electronic energy + Delta-G solvation = -23458.049848 eV Core-core repulsion = 20318.798576 eV Total energy + Delta-G solvation = -3139.251272 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.63341 -38.13893 -36.33092 -33.10434 -32.20162 -30.70769 -29.69223 -28.27487 -27.46859 -27.11356 -24.60809 -22.09291 -21.88342 -21.36305 -20.25427 -19.80758 -18.64495 -17.15999 -16.16538 -15.70079 -15.07041 -14.93659 -14.52982 -14.37707 -13.84737 -13.64603 -13.31477 -13.08807 -12.91763 -12.68682 -12.61240 -12.46206 -12.28627 -12.07378 -11.53672 -11.42617 -11.32604 -11.13220 -10.97526 -10.90034 -10.85138 -10.76481 -10.49667 -10.40571 -10.26769 -10.01807 -9.57562 -9.52123 -9.11072 -8.77516 -8.54567 -8.21511 -8.02866 -5.89133 -3.92705 3.36446 3.43147 3.44931 3.46389 4.40411 4.51935 4.60936 4.71967 4.81253 4.89159 5.00178 5.04886 5.25397 5.36011 5.41620 5.43784 5.56690 5.61236 5.66846 5.69350 5.72942 5.81804 5.86324 5.93517 5.99978 6.02990 6.08395 6.13404 6.17367 6.31546 6.49435 6.55987 6.61614 6.75788 6.80473 6.88293 7.12024 7.16763 7.27763 7.35264 7.43529 7.59639 7.71946 7.82660 8.01097 8.23376 8.56986 9.09389 9.70182 11.16932 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.022457 B = 0.004027 C = 0.003754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.522040 B = 6951.435781 C = 7457.573775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.081 3.919 3 C -0.176 4.176 4 O -0.374 6.374 5 C 0.084 3.916 6 H 0.074 0.926 7 C -0.153 4.153 8 C 0.040 3.960 9 N -0.509 5.509 10 C 0.088 3.912 11 C -0.092 4.092 12 C -0.107 4.107 13 C 0.044 3.956 14 C -0.497 4.497 15 H 0.055 0.945 16 C 0.061 3.939 17 N -0.893 5.893 18 Si 0.884 3.116 19 H -0.282 1.282 20 H -0.289 1.289 21 H -0.276 1.276 22 C -0.106 4.106 23 C -0.096 4.096 24 C 0.046 3.954 25 H 0.063 0.937 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.043 0.957 35 H 0.077 0.923 36 H 0.027 0.973 37 H 0.079 0.921 38 H 0.031 0.969 39 H 0.011 0.989 40 H 0.092 0.908 41 H 0.023 0.977 42 H 0.258 0.742 43 H 0.030 0.970 44 H 0.047 0.953 45 H 0.034 0.966 46 H 0.078 0.922 47 H 0.087 0.913 48 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.090 2.434 -11.998 19.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.023 3.977 3 C -0.234 4.234 4 O -0.292 6.292 5 C 0.026 3.974 6 H 0.092 0.908 7 C -0.192 4.192 8 C -0.088 4.088 9 N -0.234 5.234 10 C -0.020 4.020 11 C -0.129 4.129 12 C -0.146 4.146 13 C 0.025 3.975 14 C -0.535 4.535 15 H 0.074 0.926 16 C -0.140 4.140 17 N -0.532 5.532 18 Si 0.712 3.288 19 H -0.208 1.208 20 H -0.215 1.215 21 H -0.201 1.201 22 C -0.144 4.144 23 C -0.133 4.133 24 C -0.082 4.082 25 H 0.082 0.918 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.062 0.938 35 H 0.095 0.905 36 H 0.045 0.955 37 H 0.098 0.902 38 H 0.049 0.951 39 H 0.030 0.970 40 H 0.111 0.889 41 H 0.041 0.959 42 H 0.067 0.933 43 H 0.049 0.951 44 H 0.066 0.934 45 H 0.052 0.948 46 H 0.097 0.903 47 H 0.106 0.894 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.648 2.712 -11.961 19.105 hybrid contribution 0.228 0.142 -0.294 0.398 sum -14.420 2.854 -12.255 19.138 Atomic orbital electron populations 1.21857 0.93830 1.02557 1.02366 1.22072 0.94801 0.92450 0.88394 1.22320 1.01833 0.96792 1.02405 1.87951 1.36457 1.69552 1.35285 1.23063 0.84420 0.91947 0.97972 0.90777 1.22937 0.99746 0.96080 1.00398 1.22742 0.94239 0.94994 0.96862 1.64816 1.34266 1.06430 1.17880 1.21896 0.96410 0.96058 0.87635 1.21431 0.99202 0.95212 0.97093 1.21520 0.96393 1.01450 0.95194 1.18690 0.93002 0.91025 0.94752 1.21150 1.08338 1.21269 1.02789 0.92645 1.24925 0.97500 0.96697 0.94844 1.69869 1.38382 1.29730 1.15264 0.86718 0.83136 0.79226 0.79672 1.20775 1.21501 1.20055 1.21564 0.98109 0.98928 0.95835 1.21437 0.99001 0.94863 0.98027 1.23102 0.94057 0.96112 0.94977 0.91814 0.91455 0.92126 0.92354 0.92267 0.91876 0.91749 0.90845 0.91326 0.93827 0.90463 0.95478 0.90242 0.95068 0.97033 0.88939 0.95868 0.93251 0.95091 0.93407 0.94775 0.90319 0.89438 0.93035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.56 37.16 0.36 -0.86 16 2 C 0.08 0.79 3.20 -26.73 -0.09 0.70 16 3 C -0.18 -1.58 9.53 37.16 0.35 -1.22 16 4 O -0.37 -4.77 9.73 -35.23 -0.34 -5.11 16 5 C 0.08 1.09 3.29 -24.87 -0.08 1.01 16 6 H 0.07 0.92 7.76 -51.93 -0.40 0.52 16 7 C -0.15 -1.84 6.69 -25.37 -0.17 -2.01 16 8 C 0.04 0.56 5.49 -2.75 -0.02 0.54 16 9 N -0.51 -8.49 5.11 -222.49 -1.14 -9.63 16 10 C 0.09 1.65 1.63 -67.71 -0.11 1.54 16 11 C -0.09 -1.96 4.82 -26.73 -0.13 -2.09 16 12 C -0.11 -2.54 5.24 -26.73 -0.14 -2.68 16 13 C 0.04 1.08 2.59 -91.77 -0.24 0.84 16 14 C -0.50 -13.31 6.61 -34.44 -0.23 -13.54 16 15 H 0.06 1.48 6.71 -52.49 -0.35 1.13 16 16 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 17 N -0.89 -25.39 11.32 55.43 0.63 -24.77 16 18 Si 0.88 21.40 29.54 -169.99 -5.02 16.38 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 22 C -0.11 -2.23 5.41 -26.70 -0.14 -2.37 16 23 C -0.10 -1.86 4.94 -26.71 -0.13 -1.99 16 24 C 0.05 0.70 5.10 -1.89 -0.01 0.69 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.53 7.82 -51.93 -0.41 0.12 16 29 H 0.06 0.56 8.00 -51.93 -0.42 0.15 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.86 8.07 -51.93 -0.42 0.45 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.04 0.62 7.63 -51.93 -0.40 0.22 16 35 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.03 0.52 7.98 -51.93 -0.41 0.10 16 37 H 0.08 1.91 7.22 -51.93 -0.37 1.54 16 38 H 0.03 0.62 6.91 -51.93 -0.36 0.26 16 39 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 40 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 41 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 43 H 0.03 0.60 8.14 -51.92 -0.42 0.18 16 44 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.03 0.59 7.27 -51.93 -0.38 0.21 16 46 H 0.08 1.69 6.62 -51.93 -0.34 1.34 16 47 H 0.09 1.38 7.66 -51.93 -0.40 0.98 16 48 H 0.05 0.83 8.01 -51.93 -0.42 0.41 16 LS Contribution 358.02 15.07 5.40 5.40 Total: -1.00 -27.87 358.02 -10.52 -38.39 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -9.18 Total: -0.81 kcal Atomic # 6 Polarization: -18.99 SS G_CDS: -0.87 Total: -19.86 kcal Atomic # 7 Polarization: -33.88 SS G_CDS: -0.51 Total: -34.39 kcal Atomic # 8 Polarization: -4.77 SS G_CDS: -0.34 Total: -5.11 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -27.87 -10.52 -38.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173337581.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.169 kcal (2) G-P(sol) polarization free energy of solvation -27.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds