Wall clock time and date at job start Tue Mar 31 2020 05:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47022 * 2 1 4 4 O 1.42901 * 109.47094 * 180.02562 * 3 2 1 5 5 C 1.42895 * 114.00052 * 180.02562 * 4 3 2 6 6 H 1.09002 * 110.76734 * 26.79259 * 5 4 3 7 7 C 1.55147 * 110.70418 * 263.59462 * 5 4 3 8 8 C 1.54905 * 101.65185 * 205.96241 * 7 5 4 9 9 N 1.47852 * 104.79562 * 37.07346 * 8 7 5 10 10 C 1.46895 * 110.99450 * 213.63396 * 9 8 7 11 11 C 1.53001 * 109.47503 * 300.84215 * 10 9 8 12 12 C 1.52996 * 109.47301 * 180.02562 * 11 10 9 13 13 C 1.53005 * 109.47361 * 59.99885 * 12 11 10 14 14 C 1.50691 * 109.47141 * 60.00003 * 13 12 11 15 15 H 1.08002 * 119.99924 * 335.22479 * 14 13 12 16 16 C 1.37878 * 120.00124 * 155.22103 * 14 13 12 17 17 N 1.31512 * 119.99980 * 355.12094 * 16 14 13 18 18 Si 1.86803 * 120.00191 * 175.11962 * 16 14 13 19 19 H 1.48500 * 109.46999 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47130 * 240.00290 * 18 16 14 21 21 H 1.48496 * 109.47263 * 120.00063 * 18 16 14 22 22 C 1.52999 * 109.46702 * 299.99842 * 13 12 11 23 23 C 1.53002 * 109.47081 * 60.00494 * 22 13 12 24 24 C 1.47437 * 108.56285 * 335.89977 * 9 8 7 25 25 H 1.08998 * 109.46919 * 59.99820 * 1 2 3 26 26 H 1.09001 * 109.46630 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47169 * 299.99901 * 1 2 3 28 28 H 1.09002 * 109.47025 * 240.00403 * 2 1 3 29 29 H 1.09002 * 109.47385 * 120.00285 * 2 1 3 30 30 H 1.08994 * 109.47068 * 60.00037 * 3 2 1 31 31 H 1.09003 * 109.46805 * 299.99526 * 3 2 1 32 32 H 1.08992 * 110.98885 * 324.05677 * 7 5 4 33 33 H 1.08999 * 110.99008 * 87.87225 * 7 5 4 34 34 H 1.09001 * 110.37344 * 278.23878 * 8 7 5 35 35 H 1.09004 * 110.37149 * 155.90344 * 8 7 5 36 36 H 1.08997 * 109.47501 * 60.84465 * 10 9 8 37 37 H 1.08993 * 109.47142 * 60.00265 * 11 10 9 38 38 H 1.09005 * 109.47052 * 300.00321 * 11 10 9 39 39 H 1.08997 * 109.47168 * 299.99923 * 12 11 10 40 40 H 1.09001 * 109.47133 * 179.97438 * 12 11 10 41 41 H 1.08998 * 109.46805 * 180.02562 * 13 12 11 42 42 H 0.97000 * 119.99857 * 5.13646 * 17 16 14 43 43 H 1.09007 * 109.46641 * 180.02562 * 22 13 12 44 44 H 1.08997 * 109.47469 * 299.99743 * 22 13 12 45 45 H 1.09001 * 109.47131 * 179.97438 * 23 22 13 46 46 H 1.08997 * 109.47583 * 59.99318 * 23 22 13 47 47 H 1.09010 * 109.88499 * 120.40233 * 24 9 8 48 48 H 1.09003 * 109.88749 * 241.41870 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 -0.0006 5 6 4.0502 2.7480 -0.0001 6 1 3.3765 3.4708 0.4601 7 6 4.4206 3.1841 -1.4422 8 6 5.5683 4.1907 -1.1796 9 7 6.3177 3.6200 -0.0399 10 6 6.8617 4.6819 0.8169 11 6 7.7920 5.5752 -0.0062 12 6 8.3591 6.6808 0.8865 13 6 9.1439 6.0528 2.0401 14 6 10.2747 5.2250 1.4862 15 1 10.2083 4.8195 0.4874 16 6 11.3942 4.9852 2.2545 17 7 11.5181 5.5569 3.4324 18 14 12.7349 3.8482 1.6225 19 1 12.3574 3.3356 0.2809 20 1 12.8991 2.7078 2.5593 21 1 14.0136 4.5969 1.5251 22 6 8.2135 5.1596 2.8632 23 6 7.6466 4.0539 1.9705 24 6 5.4145 2.7376 0.7211 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6767 1.9563 -0.8901 32 1 4.7722 2.3353 -2.0285 33 1 3.5775 3.6720 -1.9312 34 1 5.1633 5.1678 -0.9163 35 1 6.2120 4.2694 -2.0558 36 1 6.0436 5.2806 1.2173 37 1 7.2330 6.0223 -0.8281 38 1 8.6103 4.9765 -0.4065 39 1 7.5411 7.2796 1.2872 40 1 9.0222 7.3169 0.3002 41 1 9.5474 6.8405 2.6762 42 1 10.7904 6.0871 3.7931 43 1 8.7726 4.7126 3.6852 44 1 7.3956 5.7584 3.2638 45 1 6.9841 3.4173 2.5570 46 1 8.4645 3.4551 1.5698 47 1 5.8158 1.7243 0.7409 48 1 5.3015 3.1114 1.7388 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173339528.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:16 Heat of formation + Delta-G solvation = -71.503652 kcal Electronic energy + Delta-G solvation = -23101.840608 eV Core-core repulsion = 19962.331773 eV Total energy + Delta-G solvation = -3139.508835 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 3.36 seconds Orbital eigenvalues (eV) -39.74168 -38.09846 -36.41987 -33.91351 -32.64856 -30.75322 -30.04486 -28.46234 -27.31071 -25.99620 -24.23965 -22.18306 -22.04608 -21.70614 -20.53610 -19.99169 -18.98745 -17.20030 -16.26473 -16.10232 -15.95866 -14.93959 -14.43243 -14.36662 -13.90965 -13.68946 -13.54596 -13.45010 -13.19636 -12.80962 -12.75408 -12.33428 -12.28447 -12.04813 -11.71287 -11.47312 -11.32231 -11.16735 -11.03986 -11.00824 -10.92770 -10.73750 -10.66718 -10.60137 -10.16745 -10.04811 -9.86215 -9.60146 -9.20220 -8.93862 -8.33804 -8.11878 -8.00098 -6.22968 -3.92135 3.39972 3.50458 3.53499 3.67441 4.15933 4.54405 4.61465 4.65928 4.68002 4.76441 4.92036 4.98994 5.14202 5.16988 5.30504 5.36591 5.43710 5.48954 5.51949 5.60223 5.64284 5.65227 5.75110 5.81179 5.86215 5.90316 6.00029 6.05201 6.10708 6.19792 6.30916 6.39235 6.42894 6.51535 6.53457 6.77423 6.91995 7.08747 7.11530 7.22695 7.25740 7.28884 7.49567 7.57840 7.70394 8.39262 8.58955 9.01647 9.78677 11.15417 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.026884 B = 0.003427 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.275201 B = 8169.447014 C = 8424.289307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C 0.061 3.939 4 O -0.374 6.374 5 C 0.069 3.931 6 H 0.064 0.936 7 C -0.149 4.149 8 C 0.046 3.954 9 N -0.518 5.518 10 C 0.090 3.910 11 C -0.099 4.099 12 C -0.099 4.099 13 C 0.025 3.975 14 C -0.578 4.578 15 H 0.054 0.946 16 C 0.017 3.983 17 N -0.921 5.921 18 Si 1.066 2.934 19 H -0.289 1.289 20 H -0.289 1.289 21 H -0.290 1.290 22 C -0.104 4.104 23 C -0.095 4.095 24 C 0.046 3.954 25 H 0.055 0.945 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.044 0.956 35 H 0.082 0.918 36 H 0.026 0.974 37 H 0.037 0.963 38 H 0.080 0.920 39 H 0.028 0.972 40 H 0.051 0.949 41 H 0.028 0.972 42 H 0.269 0.731 43 H 0.053 0.947 44 H 0.020 0.980 45 H 0.036 0.964 46 H 0.082 0.918 47 H 0.087 0.913 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.010 -6.180 -7.617 22.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.016 4.016 4 O -0.293 6.293 5 C 0.010 3.990 6 H 0.082 0.918 7 C -0.187 4.187 8 C -0.082 4.082 9 N -0.243 5.243 10 C -0.018 4.018 11 C -0.137 4.137 12 C -0.138 4.138 13 C 0.006 3.994 14 C -0.616 4.616 15 H 0.072 0.928 16 C -0.186 4.186 17 N -0.558 5.558 18 Si 0.896 3.104 19 H -0.215 1.215 20 H -0.216 1.216 21 H -0.216 1.216 22 C -0.142 4.142 23 C -0.133 4.133 24 C -0.082 4.082 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.103 0.897 33 H 0.087 0.913 34 H 0.062 0.938 35 H 0.100 0.900 36 H 0.044 0.956 37 H 0.055 0.945 38 H 0.099 0.901 39 H 0.047 0.953 40 H 0.070 0.930 41 H 0.046 0.954 42 H 0.080 0.920 43 H 0.071 0.929 44 H 0.039 0.961 45 H 0.054 0.946 46 H 0.101 0.899 47 H 0.105 0.895 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -17.975 -7.246 -7.448 20.762 hybrid contribution -2.435 1.363 0.001 2.790 sum -20.409 -5.883 -7.447 22.508 Atomic orbital electron populations 1.21698 0.94886 1.02189 1.01949 1.21463 0.95558 0.95698 1.03432 1.22576 0.81432 0.97736 0.99860 1.87925 1.19138 1.27295 1.94909 1.23412 0.95268 0.84440 0.95890 0.91766 1.23186 0.98310 1.00063 0.97185 1.22929 0.93957 0.95812 0.95502 1.63698 1.32199 1.19452 1.08924 1.21850 0.95688 0.90717 0.93503 1.21486 0.98594 0.96930 0.96666 1.21455 0.97660 0.96326 0.98321 1.18889 0.93414 0.94641 0.92469 1.21981 1.03093 1.34348 1.02165 0.92827 1.25719 0.99742 0.97892 0.95269 1.70734 1.34884 1.31421 1.18734 0.83581 0.75579 0.76089 0.75158 1.21468 1.21567 1.21645 1.21604 0.97316 0.97101 0.98222 1.21456 0.98939 0.98180 0.94685 1.22847 0.89496 0.99694 0.96158 0.92600 0.92034 0.92573 0.91113 0.91065 0.93550 0.93592 0.89703 0.91291 0.93750 0.89989 0.95629 0.94473 0.90100 0.95320 0.93040 0.95385 0.91951 0.92859 0.96098 0.94582 0.89890 0.89499 0.91973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.91 37.16 0.37 -0.56 16 2 C -0.12 -1.01 6.30 -26.73 -0.17 -1.18 16 3 C 0.06 0.58 5.78 37.16 0.21 0.79 16 4 O -0.37 -4.69 10.07 -35.23 -0.35 -5.04 16 5 C 0.07 0.85 3.44 -24.91 -0.09 0.77 16 6 H 0.06 0.73 7.83 -51.93 -0.41 0.33 16 7 C -0.15 -1.74 6.80 -24.59 -0.17 -1.91 16 8 C 0.05 0.62 5.39 -2.29 -0.01 0.60 16 9 N -0.52 -8.36 5.03 -223.29 -1.12 -9.49 16 10 C 0.09 1.62 1.53 -67.71 -0.10 1.52 16 11 C -0.10 -1.89 4.87 -26.73 -0.13 -2.02 16 12 C -0.10 -2.08 5.44 -26.73 -0.15 -2.23 16 13 C 0.02 0.60 2.31 -91.77 -0.21 0.39 16 14 C -0.58 -15.62 6.73 -34.44 -0.23 -15.85 16 15 H 0.05 1.47 6.09 -52.49 -0.32 1.15 16 16 C 0.02 0.48 5.45 -17.82 -0.10 0.38 16 17 N -0.92 -27.70 13.63 55.43 0.76 -26.94 16 18 Si 1.07 25.59 29.91 -169.99 -5.08 20.51 16 19 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 C -0.10 -2.33 5.44 -26.73 -0.15 -2.47 16 23 C -0.09 -1.92 4.85 -26.73 -0.13 -2.05 16 24 C 0.05 0.68 5.92 -2.84 -0.02 0.66 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.41 8.11 -51.93 -0.42 -0.01 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.04 0.58 7.58 -51.93 -0.39 0.19 16 35 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.03 0.46 8.10 -51.93 -0.42 0.04 16 37 H 0.04 0.63 7.03 -51.93 -0.37 0.26 16 38 H 0.08 1.74 6.30 -51.93 -0.33 1.41 16 39 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.03 0.75 6.67 -51.93 -0.35 0.41 16 42 H 0.27 8.05 6.66 -40.82 -0.27 7.77 16 43 H 0.05 1.30 8.14 -51.93 -0.42 0.88 16 44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.04 0.67 6.50 -51.93 -0.34 0.33 16 46 H 0.08 1.90 7.22 -51.93 -0.37 1.53 16 47 H 0.09 1.35 8.06 -51.92 -0.42 0.93 16 48 H 0.06 0.92 6.34 -51.93 -0.33 0.59 16 LS Contribution 358.46 15.07 5.40 5.40 Total: -1.00 -29.23 358.46 -10.49 -39.72 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -9.02 Total: -1.00 kcal Atomic # 6 Polarization: -22.10 SS G_CDS: -1.06 Total: -23.16 kcal Atomic # 7 Polarization: -36.06 SS G_CDS: -0.37 Total: -36.43 kcal Atomic # 8 Polarization: -4.69 SS G_CDS: -0.35 Total: -5.04 kcal Atomic # 14 Polarization: 25.59 SS G_CDS: -5.08 Total: 20.51 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.23 -10.49 -39.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173339528.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.781 kcal (2) G-P(sol) polarization free energy of solvation -29.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.36 seconds