Wall clock time and date at job start Tue Mar 31 2020 06:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42894 * 109.47220 * 2 1 4 4 C 1.42904 * 114.00136 * 179.97438 * 3 2 1 5 5 H 1.08993 * 109.50686 * 329.92294 * 4 3 2 6 6 C 1.53117 * 109.50088 * 90.00495 * 4 3 2 7 7 C 1.53119 * 109.16052 * 177.59520 * 6 4 3 8 8 C 1.53036 * 109.27768 * 302.34290 * 7 6 4 9 9 N 1.46845 * 109.52297 * 59.18072 * 8 7 6 10 10 C 1.46894 * 110.99974 * 174.16125 * 9 8 7 11 11 C 1.53002 * 109.47291 * 59.20431 * 10 9 8 12 12 C 1.53002 * 109.47229 * 179.97438 * 11 10 9 13 13 C 1.53009 * 109.46647 * 60.00426 * 12 11 10 14 14 C 1.50694 * 109.47212 * 60.00071 * 13 12 11 15 15 H 1.08004 * 120.00032 * 275.11304 * 14 13 12 16 16 C 1.37878 * 120.00333 * 95.10954 * 14 13 12 17 17 N 1.31511 * 120.00234 * 186.38228 * 16 14 13 18 18 Si 1.86804 * 119.99846 * 6.38825 * 16 14 13 19 19 H 1.48497 * 109.47315 * 84.90888 * 18 16 14 20 20 H 1.48494 * 109.47091 * 204.91372 * 18 16 14 21 21 H 1.48507 * 109.47024 * 324.91472 * 18 16 14 22 22 C 1.52995 * 109.47124 * 299.99932 * 13 12 11 23 23 C 1.52994 * 109.47555 * 60.00129 * 22 13 12 24 24 C 1.46850 * 111.19524 * 298.25655 * 9 8 7 25 25 H 1.09005 * 109.46889 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.47279 * 299.99752 * 1 2 3 27 27 H 1.09001 * 109.47488 * 60.00342 * 1 2 3 28 28 H 1.09000 * 109.47096 * 240.00021 * 2 1 3 29 29 H 1.09000 * 109.47482 * 120.00212 * 2 1 3 30 30 H 1.09003 * 109.52524 * 57.68805 * 6 4 3 31 31 H 1.09009 * 109.57400 * 297.53084 * 6 4 3 32 32 H 1.09000 * 109.50440 * 62.28511 * 7 6 4 33 33 H 1.09002 * 109.50374 * 182.40050 * 7 6 4 34 34 H 1.09005 * 109.45785 * 179.19581 * 8 7 6 35 35 H 1.08999 * 109.46128 * 299.16050 * 8 7 6 36 36 H 1.09000 * 109.47237 * 179.21223 * 10 9 8 37 37 H 1.08994 * 109.47041 * 300.00215 * 11 10 9 38 38 H 1.09001 * 109.46633 * 60.00296 * 11 10 9 39 39 H 1.09000 * 109.47440 * 300.00879 * 12 11 10 40 40 H 1.08997 * 109.46936 * 180.02562 * 12 11 10 41 41 H 1.09005 * 109.46795 * 179.97438 * 13 12 11 42 42 H 0.97001 * 119.99970 * 180.02562 * 17 16 14 43 43 H 1.09002 * 109.47063 * 300.00225 * 22 13 12 44 44 H 1.08999 * 109.47251 * 180.02562 * 22 13 12 45 45 H 1.09001 * 109.47650 * 179.97438 * 23 22 13 46 46 H 1.09000 * 109.47036 * 59.99462 * 23 22 13 47 47 H 1.08998 * 109.46175 * 301.72478 * 24 9 8 48 48 H 1.09004 * 109.45796 * 181.76178 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8637 0.6026 0.5158 6 6 3.9410 1.5003 -1.4425 7 6 5.4614 1.6816 -1.4333 8 6 5.8127 2.9635 -0.6747 9 7 5.3039 2.8753 0.7000 10 6 5.7419 4.0280 1.4983 11 6 5.2343 5.3186 0.8520 12 6 5.6900 6.5191 1.6839 13 6 7.2186 6.5463 1.7451 14 6 7.7753 6.6619 0.3495 15 1 7.9166 5.7752 -0.2506 16 6 8.1041 7.8996 -0.1613 17 7 8.4705 8.0158 -1.4190 18 14 8.0293 9.4116 0.9332 19 1 9.3022 9.5405 1.6871 20 1 7.8261 10.6201 0.0946 21 1 6.9001 9.2761 1.8882 22 6 7.7262 5.2558 2.3914 23 6 7.2705 4.0553 1.5596 24 6 3.8410 2.7484 0.7175 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.4779 2.3346 -1.9695 31 1 3.6885 0.5666 -1.9453 32 1 5.9267 0.8280 -0.9404 33 1 5.8255 1.7538 -2.4581 34 1 6.8954 3.0880 -0.6540 35 1 5.3585 3.8182 -1.1760 36 1 5.3397 3.9446 2.5079 37 1 5.6367 5.4019 -0.1576 38 1 4.1454 5.2993 0.8087 39 1 5.2874 6.4355 2.6934 40 1 5.3280 7.4384 1.2236 41 1 7.5433 7.4019 2.3374 42 1 8.7021 8.8865 -1.7782 43 1 7.3235 5.1722 3.4009 44 1 8.8151 5.2754 2.4354 45 1 7.6325 3.1359 2.0198 46 1 7.6731 4.1389 0.5501 47 1 3.3961 3.6041 0.2098 48 1 3.4916 2.7167 1.7496 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173339720.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:02 Heat of formation + Delta-G solvation = -68.103560 kcal Electronic energy + Delta-G solvation = -23727.677665 eV Core-core repulsion = 20588.316269 eV Total energy + Delta-G solvation = -3139.361396 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.79931 -38.18415 -36.28070 -33.19508 -31.85275 -31.60036 -29.99145 -29.31491 -28.33574 -24.93983 -23.75784 -22.88475 -22.75692 -21.75260 -20.57847 -19.36130 -18.39526 -16.90125 -16.30185 -15.88686 -15.65915 -14.81785 -14.60735 -14.13527 -14.06104 -13.81333 -13.58161 -13.40983 -13.27367 -12.75765 -12.47602 -12.41295 -12.09675 -12.03171 -11.89197 -11.70186 -11.40185 -11.25137 -10.96183 -10.89066 -10.81862 -10.73180 -10.47649 -10.41780 -10.07244 -9.93789 -9.66921 -9.47874 -9.26359 -9.08942 -8.73304 -8.41066 -7.82018 -6.02932 -3.99835 3.31117 3.39830 3.41816 3.43925 4.40732 4.46541 4.79756 4.85727 4.91910 5.05196 5.12500 5.17772 5.27533 5.31630 5.35014 5.49925 5.59626 5.65729 5.66421 5.71072 5.78408 5.87262 5.90398 5.96389 6.00572 6.04287 6.13375 6.20940 6.24180 6.26592 6.38486 6.40257 6.45648 6.48993 6.61885 6.80321 6.84149 7.02705 7.12154 7.16439 7.21887 7.25317 7.51470 7.54559 7.57257 7.87732 8.59141 9.02711 9.62029 11.10081 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.027985 B = 0.004010 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.298080 B = 6981.649842 C = 7124.767962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 O -0.386 6.386 4 C 0.096 3.904 5 H 0.066 0.934 6 C -0.140 4.140 7 C -0.113 4.113 8 C 0.046 3.954 9 N -0.530 5.530 10 C 0.094 3.906 11 C -0.137 4.137 12 C -0.102 4.102 13 C 0.007 3.993 14 C -0.501 4.501 15 H 0.077 0.923 16 C 0.068 3.932 17 N -0.904 5.904 18 Si 0.874 3.126 19 H -0.278 1.278 20 H -0.293 1.293 21 H -0.266 1.266 22 C -0.100 4.100 23 C -0.101 4.101 24 C 0.059 3.941 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.045 0.955 29 H 0.047 0.953 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.086 0.914 35 H 0.043 0.957 36 H 0.069 0.931 37 H 0.081 0.919 38 H 0.038 0.962 39 H 0.028 0.972 40 H 0.047 0.953 41 H 0.028 0.972 42 H 0.261 0.739 43 H 0.033 0.967 44 H 0.055 0.945 45 H 0.048 0.952 46 H 0.076 0.924 47 H 0.044 0.956 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.875 -14.812 3.223 18.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.018 4.018 3 O -0.304 6.304 4 C 0.038 3.962 5 H 0.084 0.916 6 C -0.178 4.178 7 C -0.151 4.151 8 C -0.082 4.082 9 N -0.255 5.255 10 C -0.013 4.013 11 C -0.176 4.176 12 C -0.141 4.141 13 C -0.012 4.012 14 C -0.538 4.538 15 H 0.095 0.905 16 C -0.133 4.133 17 N -0.542 5.542 18 Si 0.702 3.298 19 H -0.204 1.204 20 H -0.219 1.219 21 H -0.191 1.191 22 C -0.138 4.138 23 C -0.139 4.139 24 C -0.069 4.069 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.104 0.896 35 H 0.061 0.939 36 H 0.087 0.913 37 H 0.100 0.900 38 H 0.056 0.944 39 H 0.046 0.954 40 H 0.066 0.934 41 H 0.047 0.953 42 H 0.071 0.929 43 H 0.052 0.948 44 H 0.073 0.927 45 H 0.066 0.934 46 H 0.095 0.905 47 H 0.062 0.938 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.756 -14.962 3.286 18.718 hybrid contribution -0.248 1.476 0.034 1.497 sum -11.004 -13.486 3.320 17.719 Atomic orbital electron populations 1.21741 0.93990 1.01990 1.03108 1.22450 0.95324 0.84169 0.99864 1.87878 1.21383 1.26093 1.95088 1.22048 0.80039 0.98695 0.95430 0.91624 1.22078 0.96698 1.02018 0.97017 1.21551 0.94650 0.98726 1.00208 1.22205 1.01464 0.96314 0.88190 1.62151 1.08562 1.42246 1.12524 1.21683 0.96584 0.87272 0.95811 1.22036 0.97940 0.95466 1.02167 1.21613 0.99233 0.96833 0.96381 1.19196 0.91563 0.93398 0.96994 1.21024 1.41154 0.94304 0.97347 0.90548 1.25071 0.94893 0.98650 0.94658 1.69910 1.46852 1.24319 1.13147 0.86909 0.78930 0.82944 0.80982 1.20407 1.21914 1.19126 1.21454 0.99859 0.96079 0.96413 1.21514 0.93195 0.97159 1.02016 1.21945 0.88920 0.95759 1.00296 0.91328 0.91883 0.91926 0.93625 0.93519 0.91402 0.92266 0.91427 0.91291 0.89555 0.93868 0.91253 0.90045 0.94375 0.95355 0.93392 0.95346 0.92884 0.94804 0.92668 0.93351 0.90533 0.93753 0.90766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 10.28 37.15 0.38 -0.84 16 2 C 0.06 0.57 6.47 37.15 0.24 0.81 16 3 O -0.39 -4.98 9.99 -35.23 -0.35 -5.34 16 4 C 0.10 1.23 2.77 -26.65 -0.07 1.15 16 5 H 0.07 0.81 7.79 -51.93 -0.40 0.41 16 6 C -0.14 -1.73 5.62 -26.61 -0.15 -1.88 16 7 C -0.11 -1.45 6.09 -26.65 -0.16 -1.61 16 8 C 0.05 0.72 4.63 -3.84 -0.02 0.70 16 9 N -0.53 -8.21 4.64 -226.69 -1.05 -9.27 16 10 C 0.09 1.61 2.23 -67.71 -0.15 1.46 16 11 C -0.14 -2.63 4.29 -26.73 -0.11 -2.75 16 12 C -0.10 -2.13 5.44 -26.73 -0.15 -2.27 16 13 C 0.01 0.17 2.28 -91.77 -0.21 -0.04 16 14 C -0.50 -13.29 7.31 -34.44 -0.25 -13.54 16 15 H 0.08 2.17 6.26 -52.48 -0.33 1.84 16 16 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 17 N -0.90 -27.12 13.96 55.43 0.77 -26.35 16 18 Si 0.87 21.50 27.04 -169.99 -4.60 16.91 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 21 H -0.27 -6.32 6.76 56.52 0.38 -5.93 16 22 C -0.10 -1.96 5.44 -26.74 -0.15 -2.10 16 23 C -0.10 -1.84 4.79 -26.73 -0.13 -1.97 16 24 C 0.06 0.86 4.68 -3.83 -0.02 0.84 16 25 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.41 7.94 -51.93 -0.41 0.00 16 29 H 0.05 0.42 8.09 -51.93 -0.42 0.00 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.06 0.64 7.94 -51.92 -0.41 0.23 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.09 1.45 6.03 -51.93 -0.31 1.14 16 35 H 0.04 0.75 6.62 -51.93 -0.34 0.41 16 36 H 0.07 1.16 8.08 -51.93 -0.42 0.74 16 37 H 0.08 1.78 5.55 -51.93 -0.29 1.49 16 38 H 0.04 0.69 6.65 -51.93 -0.35 0.34 16 39 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.03 0.67 5.22 -51.93 -0.27 0.40 16 42 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 43 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.08 1.55 4.46 -51.93 -0.23 1.32 16 47 H 0.04 0.70 6.73 -51.93 -0.35 0.35 16 48 H 0.07 1.05 8.08 -51.93 -0.42 0.63 16 LS Contribution 347.69 15.07 5.24 5.24 Total: -1.00 -28.51 347.69 -9.79 -38.30 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -8.76 Total: 0.73 kcal Atomic # 6 Polarization: -19.19 SS G_CDS: -1.04 Total: -20.23 kcal Atomic # 7 Polarization: -35.33 SS G_CDS: -0.28 Total: -35.61 kcal Atomic # 8 Polarization: -4.98 SS G_CDS: -0.35 Total: -5.34 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.60 Total: 16.91 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -28.51 -9.79 -38.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173339720.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.804 kcal (2) G-P(sol) polarization free energy of solvation -28.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds