Wall clock time and date at job start Tue Mar 31 2020 06:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42906 * 109.47321 * 2 1 4 4 C 1.42896 * 114.00468 * 180.02562 * 3 2 1 5 5 H 1.09007 * 109.50066 * 29.91970 * 4 3 2 6 6 C 1.53117 * 109.50125 * 269.80646 * 4 3 2 7 7 C 1.53128 * 109.15975 * 182.40314 * 6 4 3 8 8 C 1.53034 * 109.27739 * 57.64951 * 7 6 4 9 9 N 1.46844 * 109.52653 * 300.82239 * 8 7 6 10 10 C 1.46900 * 111.00209 * 185.83844 * 9 8 7 11 11 C 1.52995 * 109.47168 * 175.78930 * 10 9 8 12 12 C 1.53001 * 109.47122 * 180.02562 * 11 10 9 13 13 C 1.52999 * 109.47455 * 59.99732 * 12 11 10 14 14 C 1.50700 * 109.47281 * 179.97438 * 13 12 11 15 15 H 1.07997 * 119.99658 * 120.00314 * 14 13 12 16 16 C 1.37879 * 120.00164 * 300.00399 * 14 13 12 17 17 N 1.31510 * 119.99981 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99844 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47142 * 59.99968 * 18 16 14 20 20 H 1.48497 * 109.46765 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47145 * 299.99812 * 18 16 14 22 22 C 1.52996 * 109.46964 * 300.00564 * 13 12 11 23 23 C 1.52992 * 109.47603 * 59.99489 * 22 13 12 24 24 C 1.46850 * 111.19711 * 61.74102 * 9 8 7 25 25 H 1.09002 * 109.47153 * 299.99798 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99970 * 1 2 3 28 28 H 1.08996 * 109.47853 * 120.00174 * 2 1 3 29 29 H 1.09002 * 109.47153 * 240.00202 * 2 1 3 30 30 H 1.08996 * 109.52278 * 302.30068 * 6 4 3 31 31 H 1.09001 * 109.52635 * 62.49993 * 6 4 3 32 32 H 1.09004 * 109.49875 * 297.71047 * 7 6 4 33 33 H 1.09001 * 109.50134 * 177.59017 * 7 6 4 34 34 H 1.09000 * 109.46321 * 180.80053 * 8 7 6 35 35 H 1.09003 * 109.46301 * 60.83803 * 8 7 6 36 36 H 1.09003 * 109.47086 * 295.79385 * 10 9 8 37 37 H 1.09003 * 109.47489 * 300.00208 * 11 10 9 38 38 H 1.09001 * 109.47424 * 60.00479 * 11 10 9 39 39 H 1.09007 * 109.46920 * 299.99775 * 12 11 10 40 40 H 1.09001 * 109.47279 * 180.02562 * 12 11 10 41 41 H 1.09003 * 109.46638 * 60.00421 * 13 12 11 42 42 H 0.96992 * 120.00430 * 179.97438 * 17 16 14 43 43 H 1.09003 * 109.47325 * 299.99435 * 22 13 12 44 44 H 1.09006 * 109.47092 * 179.97438 * 22 13 12 45 45 H 1.09001 * 109.47386 * 179.97438 * 23 22 13 46 46 H 1.09007 * 109.46889 * 60.00150 * 23 22 13 47 47 H 1.09005 * 109.45965 * 178.23964 * 24 9 8 48 48 H 1.09001 * 109.46275 * 58.27927 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 1 3.8638 0.6012 -0.5134 6 6 3.9406 1.5052 1.4425 7 6 5.4611 1.6866 1.4330 8 6 5.8126 2.9658 0.6702 9 7 5.3041 2.8730 -0.7043 10 6 5.7423 4.0230 -1.5065 11 6 5.2832 3.8395 -2.9543 12 6 5.7401 5.0369 -3.7900 13 6 7.2663 5.1358 -3.7476 14 6 7.7164 6.3149 -4.5712 15 1 8.2741 7.1155 -4.1082 16 6 7.4161 6.3715 -5.9157 17 7 6.7374 5.3964 -6.4795 18 14 7.9734 7.8334 -6.9363 19 1 9.4547 7.9300 -6.8952 20 1 7.5284 7.6543 -8.3417 21 1 7.3806 9.0777 -6.3837 22 6 7.7254 5.3193 -2.2997 23 6 7.2685 4.1220 -1.4641 24 6 3.8412 2.7460 -0.7218 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 3.4775 2.3413 1.9665 31 1 3.6882 0.5727 1.9474 32 1 5.9265 0.8312 0.9431 33 1 5.8250 1.7623 2.4577 34 1 6.8953 3.0904 0.6493 35 1 5.3583 3.8222 1.1684 36 1 5.3073 4.9362 -1.1003 37 1 5.7181 2.9262 -3.3605 38 1 4.1959 3.7687 -2.9846 39 1 5.3054 5.9503 -3.3840 40 1 5.4126 4.9064 -4.8214 41 1 7.7010 4.2224 -4.1536 42 1 6.5258 5.4363 -7.4252 43 1 7.2907 6.2327 -1.8937 44 1 8.8128 5.3894 -2.2694 45 1 7.5960 4.2525 -0.4327 46 1 7.7032 3.2085 -1.8701 47 1 3.4921 2.7109 -1.7538 48 1 3.3961 3.6035 -0.2171 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173339721.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:04 Heat of formation + Delta-G solvation = -86.457891 kcal Electronic energy + Delta-G solvation = -23265.482096 eV Core-core repulsion = 20125.324796 eV Total energy + Delta-G solvation = -3140.157300 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.88956 -39.27386 -37.61579 -35.01741 -33.42912 -32.61004 -31.52748 -30.45024 -29.76809 -26.68603 -24.82759 -24.37173 -23.57759 -22.44009 -21.92342 -20.77600 -20.38714 -18.40595 -17.93026 -17.08487 -16.59726 -16.48249 -15.95223 -15.70380 -15.33447 -15.00247 -14.80646 -14.60689 -14.44940 -14.20508 -14.01109 -13.72091 -13.35664 -13.15576 -12.95815 -12.88621 -12.70207 -12.58514 -12.44297 -12.26574 -12.19197 -11.96450 -11.84891 -11.68526 -11.63541 -11.57962 -11.34868 -11.16823 -10.71105 -10.45200 -10.36476 -10.32329 -9.27822 -8.05258 -6.19422 1.41673 1.42770 1.50379 2.41193 2.45263 3.17924 3.21750 3.75809 3.81318 3.95397 3.99098 4.08412 4.15486 4.24131 4.31859 4.40613 4.43730 4.49253 4.53222 4.57500 4.59145 4.68811 4.77396 4.81164 4.84733 4.89637 4.91360 4.93783 4.97972 5.01311 5.04617 5.08392 5.17515 5.23484 5.28093 5.34155 5.38238 5.44087 5.48760 5.63183 5.71130 6.05808 6.10869 6.13408 6.24723 6.37524 6.43689 6.93437 7.48333 8.98379 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.025934 B = 0.003609 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.421935 B = 7755.887915 C = 8632.329303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.051 3.949 3 O -0.405 6.405 4 C 0.098 3.902 5 H 0.068 0.932 6 C -0.134 4.134 7 C -0.107 4.107 8 C 0.043 3.957 9 N -0.534 5.534 10 C 0.102 3.898 11 C -0.098 4.098 12 C -0.099 4.099 13 C 0.046 3.954 14 C -0.536 4.536 15 H 0.051 0.949 16 C 0.011 3.989 17 N -0.916 5.916 18 Si 0.951 3.049 19 H -0.271 1.271 20 H -0.285 1.285 21 H -0.272 1.272 22 C -0.101 4.101 23 C -0.098 4.098 24 C 0.058 3.942 25 H 0.060 0.940 26 H 0.091 0.909 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.030 0.970 36 H 0.029 0.971 37 H 0.049 0.951 38 H 0.051 0.949 39 H 0.023 0.977 40 H 0.058 0.942 41 H -0.007 1.007 42 H 0.259 0.741 43 H 0.045 0.955 44 H 0.050 0.950 45 H 0.077 0.923 46 H 0.058 0.942 47 H 0.069 0.931 48 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.665 -10.940 17.088 21.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.025 4.025 3 O -0.325 6.325 4 C 0.040 3.960 5 H 0.086 0.914 6 C -0.172 4.172 7 C -0.144 4.144 8 C -0.084 4.084 9 N -0.260 5.260 10 C -0.006 4.006 11 C -0.136 4.136 12 C -0.138 4.138 13 C 0.028 3.972 14 C -0.574 4.574 15 H 0.069 0.931 16 C -0.187 4.187 17 N -0.556 5.556 18 Si 0.777 3.223 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.198 1.198 22 C -0.139 4.139 23 C -0.136 4.136 24 C -0.070 4.070 25 H 0.079 0.921 26 H 0.110 0.890 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.110 0.890 34 H 0.106 0.894 35 H 0.048 0.952 36 H 0.047 0.953 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.042 0.958 40 H 0.077 0.923 41 H 0.011 0.989 42 H 0.068 0.932 43 H 0.064 0.936 44 H 0.069 0.931 45 H 0.095 0.905 46 H 0.077 0.923 47 H 0.088 0.912 48 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -7.679 -11.268 16.718 21.574 hybrid contribution -0.025 1.442 -0.825 1.662 sum -7.703 -9.825 15.893 20.211 Atomic orbital electron populations 1.21765 0.92894 1.03371 1.02578 1.22692 0.96281 0.82826 1.00730 1.87851 1.21208 1.28204 1.95233 1.21973 0.80466 0.97450 0.96063 0.91413 1.22036 0.96467 1.02773 0.95940 1.21527 0.94757 0.97370 1.00773 1.22333 1.01135 0.97699 0.87249 1.61869 1.09404 1.42084 1.12629 1.21447 0.95938 0.90232 0.92934 1.21539 0.99013 0.98673 0.94334 1.21391 0.98293 0.94693 0.99387 1.18614 0.92403 0.94577 0.91620 1.21620 1.34762 1.06567 0.94466 0.93102 1.25745 0.95311 0.98562 0.99098 1.70014 1.40353 1.33495 1.11746 0.85721 0.78823 0.80113 0.77651 1.19660 1.21024 1.19759 1.21487 0.99402 0.96998 0.95980 1.21558 0.93701 0.98437 0.99856 1.21999 0.87897 0.96560 1.00537 0.92083 0.89037 0.92748 0.92162 0.93185 0.92027 0.90309 0.90950 0.89017 0.89356 0.95192 0.95293 0.93236 0.93059 0.95821 0.92346 0.98872 0.93163 0.93615 0.93102 0.90468 0.92292 0.91216 0.95318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 10.28 71.98 0.74 -1.48 16 2 C 0.05 0.91 6.47 71.98 0.47 1.38 16 3 O -0.41 -9.93 9.99 -148.98 -1.49 -11.42 16 4 C 0.10 2.32 2.77 30.64 0.08 2.41 16 5 H 0.07 1.59 7.79 -2.38 -0.02 1.58 16 6 C -0.13 -2.57 5.62 30.68 0.17 -2.39 16 7 C -0.11 -1.93 6.09 30.65 0.19 -1.74 16 8 C 0.04 1.00 5.13 86.33 0.44 1.44 16 9 N -0.53 -15.45 4.52 -871.13 -3.94 -19.39 16 10 C 0.10 3.51 1.95 44.91 0.09 3.59 16 11 C -0.10 -3.93 4.98 30.59 0.15 -3.78 16 12 C -0.10 -4.84 4.98 30.59 0.15 -4.69 16 13 C 0.05 2.36 2.10 -11.54 -0.02 2.34 16 14 C -0.54 -30.20 8.56 25.60 0.22 -29.98 16 15 H 0.05 2.80 7.74 -2.91 -0.02 2.78 16 16 C 0.01 0.64 5.30 84.66 0.45 1.08 16 17 N -0.92 -54.12 11.32 21.45 0.24 -53.87 16 18 Si 0.95 44.41 29.54 68.60 2.03 46.44 16 19 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 20 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 21 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 22 C -0.10 -4.16 5.14 30.59 0.16 -4.01 16 23 C -0.10 -3.34 4.85 30.59 0.15 -3.19 16 24 C 0.06 1.65 4.87 86.32 0.42 2.08 16 25 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 28 H 0.06 0.89 7.95 -2.39 -0.02 0.87 16 29 H 0.05 0.87 8.09 -2.39 -0.02 0.85 16 30 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.08 1.25 7.95 -2.39 -0.02 1.23 16 32 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 33 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.09 1.97 5.90 -2.39 -0.01 1.95 16 35 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.05 1.95 6.28 -2.39 -0.01 1.94 16 39 H 0.02 1.14 8.14 -2.38 -0.02 1.12 16 40 H 0.06 3.25 6.07 -2.39 -0.01 3.24 16 41 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 42 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 43 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 45 H 0.08 2.18 6.22 -2.39 -0.01 2.17 16 46 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 47 H 0.07 2.19 6.01 -2.38 -0.01 2.17 16 48 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -61.97 356.24 1.58 -60.39 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: 0.89 Total: 14.78 kcal Atomic # 6 Polarization: -40.78 SS G_CDS: 3.86 Total: -36.93 kcal Atomic # 7 Polarization: -69.56 SS G_CDS: -3.70 Total: -73.26 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: -1.49 Total: -11.42 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -61.97 1.58 -60.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173339721.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.069 kcal (2) G-P(sol) polarization free energy of solvation -61.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds