Wall clock time and date at job start Tue Mar 31 2020 06:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46903 * 111.00237 * 2 1 4 4 C 1.53000 * 109.47252 * 199.67614 * 3 2 1 5 5 H 1.08997 * 109.47889 * 301.71291 * 4 3 2 6 6 C 1.53091 * 109.47837 * 181.68743 * 4 3 2 7 7 C 1.53182 * 109.16236 * 182.40886 * 6 4 3 8 8 C 1.53179 * 109.03318 * 56.97823 * 7 6 4 9 9 C 1.53091 * 109.16663 * 303.02091 * 8 7 6 10 10 O 1.42898 * 109.41395 * 57.61050 * 9 8 7 11 11 C 1.46906 * 110.99992 * 123.95240 * 2 1 3 12 12 C 1.52999 * 109.46692 * 66.04504 * 11 2 1 13 13 C 1.53005 * 109.46841 * 180.02562 * 12 11 2 14 14 C 1.52997 * 109.47414 * 59.99941 * 13 12 11 15 15 C 1.50701 * 109.46935 * 60.00061 * 14 13 12 16 16 H 1.08001 * 120.00100 * 359.97438 * 15 14 13 17 17 C 1.37879 * 120.00050 * 179.72502 * 15 14 13 18 18 N 1.31515 * 119.99869 * 0.28109 * 17 15 14 19 19 Si 1.86803 * 120.00084 * 180.27319 * 17 15 14 20 20 H 1.48505 * 109.46751 * 60.00081 * 19 17 15 21 21 H 1.48495 * 109.47133 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47193 * 300.00412 * 19 17 15 23 23 C 1.52997 * 109.47150 * 300.00542 * 14 13 12 24 24 C 1.53002 * 109.47762 * 59.99486 * 23 14 13 25 25 H 1.09003 * 109.47502 * 301.72907 * 1 2 3 26 26 H 1.09005 * 109.47039 * 61.72601 * 1 2 3 27 27 H 1.08998 * 109.47221 * 181.72550 * 1 2 3 28 28 H 1.09002 * 109.46750 * 319.67776 * 3 2 1 29 29 H 1.09004 * 109.47038 * 79.67773 * 3 2 1 30 30 H 1.09002 * 109.52356 * 302.31265 * 6 4 3 31 31 H 1.08994 * 109.52309 * 62.50272 * 6 4 3 32 32 H 1.08997 * 109.54188 * 176.84615 * 7 6 4 33 33 H 1.08998 * 109.54035 * 297.02580 * 7 6 4 34 34 H 1.08999 * 109.52265 * 62.92882 * 8 7 6 35 35 H 1.08998 * 109.52211 * 183.04918 * 8 7 6 36 36 H 1.09001 * 109.47888 * 177.59044 * 9 8 7 37 37 H 1.08999 * 109.47909 * 297.61418 * 9 8 7 38 38 H 1.08996 * 109.47011 * 186.04509 * 11 2 1 39 39 H 1.08999 * 109.47147 * 60.00886 * 12 11 2 40 40 H 1.09001 * 109.47757 * 300.00076 * 12 11 2 41 41 H 1.09002 * 109.47276 * 300.00269 * 13 12 11 42 42 H 1.09003 * 109.47173 * 180.02562 * 13 12 11 43 43 H 1.08999 * 109.47296 * 179.97438 * 14 13 12 44 44 H 0.97001 * 120.00049 * 180.02562 * 18 17 15 45 45 H 1.09000 * 109.47238 * 180.02562 * 23 14 13 46 46 H 1.09002 * 109.46856 * 299.99254 * 23 14 13 47 47 H 1.08989 * 109.47356 * 180.02562 * 24 23 14 48 48 H 1.09001 * 109.46614 * 59.99814 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.4463 1.3608 -0.4857 5 1 4.0415 0.7166 0.1614 6 6 4.0084 2.7842 -0.4458 7 6 5.4404 2.7747 -0.9898 8 6 5.4327 2.1921 -2.4065 9 6 4.8154 0.7916 -2.3706 10 8 3.4965 0.8676 -1.8260 11 6 1.9954 -0.7660 1.1376 12 6 1.6314 -2.2426 0.9704 13 6 2.1791 -3.0403 2.1555 14 6 1.5690 -2.5085 3.4539 15 6 0.0699 -2.6534 3.4007 16 1 -0.4006 -3.0816 2.5280 17 6 -0.7006 -2.2442 4.4684 18 7 -0.1277 -1.7222 5.5309 19 14 -2.5582 -2.4309 4.4056 20 1 -2.9062 -3.8651 4.2409 21 1 -3.1500 -1.9203 5.6682 22 1 -3.0950 -1.6563 3.2579 23 6 1.9329 -1.0319 3.6211 24 6 1.3852 -0.2341 2.4360 25 1 -0.3634 0.5405 0.8741 26 1 -0.3633 0.4868 -0.9051 27 1 -0.3633 -1.0272 0.0309 28 1 1.3942 1.9914 -0.6650 29 1 1.9538 1.7766 1.0111 30 1 3.3895 3.4376 -1.0607 31 1 4.0118 3.1458 0.5824 32 1 5.8270 3.7934 -1.0166 33 1 6.0711 2.1621 -0.3456 34 1 4.8425 2.8336 -3.0609 35 1 6.4545 2.1314 -2.7809 36 1 4.7682 0.3892 -3.3826 37 1 5.4289 0.1399 -1.7485 38 1 3.0797 -0.6611 1.1757 39 1 2.0658 -2.6214 0.0452 40 1 0.5471 -2.3475 0.9323 41 1 3.2634 -2.9355 2.1941 42 1 1.9202 -4.0924 2.0362 43 1 1.9589 -3.0771 4.2982 44 1 -0.6697 -1.4347 6.2822 45 1 1.4986 -0.6532 4.5464 46 1 3.0172 -0.9271 3.6597 47 1 1.6449 0.8177 2.5549 48 1 0.3009 -0.3390 2.3975 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173339725.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:32 Heat of formation + Delta-G solvation = -66.622988 kcal Electronic energy + Delta-G solvation = -24050.143589 eV Core-core repulsion = 20910.846396 eV Total energy + Delta-G solvation = -3139.297194 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -39.61301 -38.44273 -35.42035 -33.58265 -32.33587 -31.53007 -29.53913 -28.50405 -27.30334 -24.99525 -24.51079 -23.46312 -22.14844 -21.28777 -20.28698 -19.55055 -18.39596 -16.32948 -16.00627 -15.76018 -15.09418 -14.92495 -14.69161 -14.57066 -14.26941 -13.74220 -13.46774 -13.19515 -12.94564 -12.68818 -12.61686 -12.25793 -11.90927 -11.60065 -11.43715 -11.37562 -11.21959 -11.15739 -10.93835 -10.81641 -10.71524 -10.68602 -10.58127 -10.31472 -10.03569 -9.85156 -9.62824 -9.28893 -9.11512 -8.88788 -8.60604 -8.25542 -7.57017 -5.93072 -3.97108 3.32573 3.37831 3.40537 3.89187 4.29963 4.46967 4.70546 4.78199 4.79244 5.01636 5.16777 5.32278 5.37112 5.39405 5.54435 5.61470 5.62931 5.68003 5.72275 5.82976 5.83612 5.89178 5.92112 5.98064 6.08959 6.11169 6.17806 6.23542 6.39035 6.42632 6.51170 6.59836 6.61041 6.82347 6.83262 6.94227 7.17078 7.22739 7.39029 7.44516 7.55554 7.64867 7.73122 7.80513 7.99839 8.19977 8.53765 9.05262 9.65682 11.12706 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.028475 B = 0.004312 C = 0.004254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.094206 B = 6491.814117 C = 6580.640246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.529 5.529 3 C 0.059 3.941 4 C 0.099 3.901 5 H 0.057 0.943 6 C -0.151 4.151 7 C -0.121 4.121 8 C -0.156 4.156 9 C 0.059 3.941 10 O -0.359 6.359 11 C 0.089 3.911 12 C -0.094 4.094 13 C -0.107 4.107 14 C 0.044 3.956 15 C -0.498 4.498 16 H 0.054 0.946 17 C 0.061 3.939 18 N -0.892 5.892 19 Si 0.882 3.118 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.278 1.278 23 C -0.103 4.103 24 C -0.131 4.131 25 H 0.029 0.971 26 H 0.055 0.945 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.089 0.911 37 H 0.046 0.954 38 H 0.063 0.937 39 H 0.043 0.957 40 H 0.070 0.930 41 H 0.031 0.969 42 H 0.046 0.954 43 H 0.023 0.977 44 H 0.258 0.742 45 H 0.088 0.912 46 H 0.011 0.989 47 H 0.028 0.972 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.857 8.447 -12.522 17.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.251 5.251 3 C -0.070 4.070 4 C 0.041 3.959 5 H 0.075 0.925 6 C -0.190 4.190 7 C -0.159 4.159 8 C -0.194 4.194 9 C -0.018 4.018 10 O -0.277 6.277 11 C -0.018 4.018 12 C -0.132 4.132 13 C -0.145 4.145 14 C 0.025 3.975 15 C -0.537 4.537 16 H 0.072 0.928 17 C -0.139 4.139 18 N -0.532 5.532 19 Si 0.710 3.290 20 H -0.204 1.204 21 H -0.215 1.215 22 H -0.204 1.204 23 C -0.141 4.141 24 C -0.170 4.170 25 H 0.048 0.952 26 H 0.074 0.926 27 H 0.092 0.908 28 H 0.091 0.909 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.107 0.893 37 H 0.064 0.936 38 H 0.081 0.919 39 H 0.062 0.938 40 H 0.088 0.912 41 H 0.050 0.950 42 H 0.065 0.935 43 H 0.041 0.959 44 H 0.068 0.932 45 H 0.107 0.893 46 H 0.030 0.970 47 H 0.046 0.954 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 8.785 8.236 -12.892 17.641 hybrid contribution -1.019 0.526 0.972 1.504 sum 7.765 8.762 -11.919 16.708 Atomic orbital electron populations 1.22383 0.87804 1.02654 0.99594 1.62237 1.07607 1.11846 1.43406 1.22110 0.93908 0.91416 0.99541 1.22093 0.96798 0.92759 0.84261 0.92473 1.22204 0.96638 0.98236 1.01897 1.21564 0.96824 1.01144 0.96345 1.22200 1.01274 0.98361 0.97543 1.22507 0.85089 0.95161 0.99075 1.88055 1.25986 1.85437 1.28230 1.21745 0.97857 0.94221 0.88023 1.21410 1.01834 0.93084 0.96893 1.21554 0.97371 0.98333 0.97210 1.18683 0.95237 0.92046 0.91512 1.21116 0.91427 1.39695 1.01423 0.92790 1.24930 0.97882 0.95551 0.95582 1.69864 1.34916 1.42410 1.05965 0.86816 0.86539 0.78449 0.77154 1.20387 1.21482 1.20375 1.21438 0.95310 0.98608 0.98755 1.22007 1.02477 0.96653 0.95827 0.95196 0.92648 0.90779 0.90945 0.92849 0.91174 0.90981 0.91757 0.91865 0.91290 0.91334 0.89300 0.93562 0.91903 0.93840 0.91172 0.94997 0.93517 0.95918 0.93200 0.89340 0.97029 0.95361 0.90541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 8.58 60.06 0.52 0.91 16 2 N -0.53 -8.95 4.54 -234.88 -1.07 -10.02 16 3 C 0.06 0.87 4.57 -3.82 -0.02 0.85 16 4 C 0.10 1.34 2.71 -26.68 -0.07 1.27 16 5 H 0.06 0.84 6.74 -51.93 -0.35 0.49 16 6 C -0.15 -1.65 5.42 -26.59 -0.14 -1.79 16 7 C -0.12 -1.15 6.03 -26.54 -0.16 -1.31 16 8 C -0.16 -1.44 6.14 -26.59 -0.16 -1.60 16 9 C 0.06 0.65 6.84 37.20 0.25 0.91 16 10 O -0.36 -5.17 10.30 -35.23 -0.36 -5.53 16 11 C 0.09 1.66 2.11 -67.71 -0.14 1.52 16 12 C -0.09 -1.85 4.91 -26.73 -0.13 -1.99 16 13 C -0.11 -2.24 5.41 -26.73 -0.14 -2.38 16 14 C 0.04 1.07 2.58 -91.77 -0.24 0.83 16 15 C -0.50 -13.16 6.61 -34.44 -0.23 -13.39 16 16 H 0.05 1.42 6.71 -52.49 -0.35 1.07 16 17 C 0.06 1.65 5.31 -17.82 -0.09 1.56 16 18 N -0.89 -25.16 11.33 55.43 0.63 -24.53 16 19 Si 0.88 21.10 29.54 -169.99 -5.02 16.08 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 C -0.10 -2.39 5.24 -26.73 -0.14 -2.53 16 24 C -0.13 -2.72 4.26 -26.73 -0.11 -2.83 16 25 H 0.03 0.52 6.57 -51.93 -0.34 0.17 16 26 H 0.05 0.81 8.10 -51.93 -0.42 0.39 16 27 H 0.07 1.30 6.23 -51.93 -0.32 0.98 16 28 H 0.07 1.01 7.91 -51.93 -0.41 0.60 16 29 H 0.05 0.80 6.17 -51.93 -0.32 0.48 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.06 1.17 6.60 -51.93 -0.34 0.83 16 39 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.07 1.48 4.91 -51.93 -0.26 1.22 16 41 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 43 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 45 H 0.09 2.33 6.08 -51.93 -0.32 2.01 16 46 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 47 H 0.03 0.55 6.45 -51.94 -0.33 0.21 16 48 H 0.08 1.76 5.53 -51.93 -0.29 1.48 16 LS Contribution 345.91 15.07 5.21 5.21 Total: -1.00 -27.84 345.91 -10.31 -38.15 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -8.69 Total: 0.62 kcal Atomic # 6 Polarization: -18.96 SS G_CDS: -1.02 Total: -19.98 kcal Atomic # 7 Polarization: -34.11 SS G_CDS: -0.44 Total: -34.55 kcal Atomic # 8 Polarization: -5.17 SS G_CDS: -0.36 Total: -5.53 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -27.84 -10.31 -38.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173339725.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.469 kcal (2) G-P(sol) polarization free energy of solvation -27.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds