Wall clock time and date at job start Tue Mar 31 2020 06:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46902 * 110.99845 * 2 1 4 4 C 1.52998 * 109.47190 * 160.05233 * 3 2 1 5 5 H 1.09001 * 109.47937 * 55.10434 * 4 3 2 6 6 C 1.53097 * 109.47926 * 175.13740 * 4 3 2 7 7 C 1.53175 * 109.16079 * 177.59558 * 6 4 3 8 8 C 1.53181 * 109.03741 * 303.01639 * 7 6 4 9 9 C 1.53085 * 109.16092 * 56.97983 * 8 7 6 10 10 O 1.42896 * 109.48375 * 295.07819 * 4 3 2 11 11 C 1.46903 * 111.00396 * 236.04808 * 2 1 3 12 12 C 1.52996 * 109.47173 * 298.95421 * 11 2 1 13 13 C 1.52993 * 109.47188 * 180.02562 * 12 11 2 14 14 C 1.53002 * 109.46947 * 299.99486 * 13 12 11 15 15 C 1.50698 * 109.47138 * 300.00141 * 14 13 12 16 16 H 1.07999 * 120.00188 * 359.97438 * 15 14 13 17 17 C 1.37882 * 119.99962 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99821 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00030 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47108 * 90.00138 * 19 17 15 21 21 H 1.48508 * 109.47188 * 210.00156 * 19 17 15 22 22 H 1.48500 * 109.47346 * 330.00125 * 19 17 15 23 23 C 1.52999 * 109.47070 * 60.00413 * 14 13 12 24 24 C 1.53003 * 109.46778 * 58.95221 * 11 2 1 25 25 H 1.09008 * 109.46983 * 186.97996 * 1 2 3 26 26 H 1.08993 * 109.47841 * 306.98225 * 1 2 3 27 27 H 1.09002 * 109.47140 * 66.98682 * 1 2 3 28 28 H 1.09006 * 109.47287 * 280.05851 * 3 2 1 29 29 H 1.09006 * 109.47233 * 40.05572 * 3 2 1 30 30 H 1.08999 * 109.51785 * 297.49478 * 6 4 3 31 31 H 1.08995 * 109.52511 * 57.68432 * 6 4 3 32 32 H 1.09004 * 109.54262 * 183.14829 * 7 6 4 33 33 H 1.08994 * 109.54786 * 62.88590 * 7 6 4 34 34 H 1.09005 * 109.51845 * 297.07565 * 8 7 6 35 35 H 1.09001 * 109.52493 * 176.89295 * 8 7 6 36 36 H 1.08999 * 109.48071 * 182.41047 * 9 8 7 37 37 H 1.09001 * 109.48356 * 62.37835 * 9 8 7 38 38 H 1.08998 * 109.47275 * 178.95122 * 11 2 1 39 39 H 1.08998 * 109.47264 * 59.99694 * 12 11 2 40 40 H 1.09001 * 109.46853 * 300.00135 * 12 11 2 41 41 H 1.08998 * 109.47380 * 59.99628 * 13 12 11 42 42 H 1.09001 * 109.47023 * 180.02562 * 13 12 11 43 43 H 1.08999 * 109.47137 * 180.02562 * 14 13 12 44 44 H 0.97005 * 119.99745 * 179.97438 * 18 17 15 45 45 H 1.08998 * 109.47241 * 59.99868 * 23 14 13 46 46 H 1.09005 * 109.46977 * 180.02562 * 23 14 13 47 47 H 1.09003 * 109.47674 * 60.00203 * 24 11 2 48 48 H 1.08998 * 109.47136 * 299.99986 * 24 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.4440 1.3617 0.4921 5 1 4.0300 0.6729 -0.1164 6 6 4.0315 2.7708 0.3778 7 6 5.4611 2.7657 0.9279 8 6 5.4381 2.2610 2.3740 9 6 4.7962 0.8718 2.4112 10 8 3.4808 0.9412 1.8573 11 6 1.9955 -0.7659 -1.1376 12 6 1.5264 -2.2186 -1.0353 13 6 2.0753 -3.0164 -2.2197 14 6 1.5640 -2.4063 -3.5263 15 6 0.0578 -2.4504 -3.5457 16 1 -0.4809 -2.8718 -2.7099 17 6 -0.6326 -1.9527 -4.6306 18 7 0.0235 -1.4400 -5.6486 19 14 -2.4996 -2.0067 -4.6543 20 1 -3.0385 -0.7600 -4.0540 21 1 -2.9736 -2.1260 -6.0567 22 1 -2.9710 -3.1771 -3.8713 23 6 2.0331 -0.9536 -3.6288 24 6 1.4837 -0.1556 -2.4439 25 1 -0.3633 -1.0201 0.1249 26 1 -0.3634 0.6181 0.8208 27 1 -0.3633 0.4018 -0.9459 28 1 1.9580 1.7750 -1.0119 29 1 1.3912 1.9926 0.6614 30 1 4.0450 3.0760 -0.6686 31 1 3.4222 3.4674 0.9535 32 1 5.8657 3.7775 0.9011 33 1 6.0828 2.1069 0.3217 34 1 4.8572 2.9474 2.9901 35 1 6.4575 2.2017 2.7554 36 1 4.7383 0.5256 3.4432 37 1 5.4000 0.1765 1.8279 38 1 3.0849 -0.7341 -1.1240 39 1 0.4370 -2.2504 -1.0489 40 1 1.8910 -2.6534 -0.1045 41 1 3.1647 -2.9846 -2.2056 42 1 1.7407 -4.0513 -2.1470 43 1 1.9547 -2.9750 -4.3702 44 1 -0.4622 -1.0902 -6.4120 45 1 3.1226 -0.9218 -3.6147 46 1 1.6685 -0.5189 -4.5595 47 1 1.8179 0.8794 -2.5170 48 1 0.3943 -0.1874 -2.4575 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173339726.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:35 Heat of formation + Delta-G solvation = -65.749163 kcal Electronic energy + Delta-G solvation = -24059.134379 eV Core-core repulsion = 20919.875077 eV Total energy + Delta-G solvation = -3139.259302 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.62206 -38.45827 -35.41695 -33.58247 -32.33701 -31.52427 -29.56985 -28.50049 -27.28844 -24.99871 -24.50564 -23.48053 -22.19774 -21.26945 -20.27630 -19.54614 -18.39434 -16.34000 -16.00583 -15.77102 -15.10885 -14.91106 -14.68428 -14.57208 -14.25707 -13.78328 -13.46555 -13.21961 -12.92473 -12.69365 -12.61861 -12.27613 -11.91438 -11.61000 -11.43186 -11.37054 -11.22040 -11.15618 -10.95432 -10.82216 -10.69947 -10.69057 -10.55011 -10.31690 -10.03163 -9.84977 -9.65250 -9.29245 -9.12818 -8.88623 -8.59987 -8.26375 -7.56583 -5.93754 -3.97699 3.30358 3.38143 3.41245 3.89336 4.29969 4.46446 4.70981 4.78831 4.79716 5.02768 5.17384 5.33066 5.36514 5.39649 5.54848 5.60918 5.63268 5.68060 5.72671 5.83773 5.83840 5.89969 5.91363 5.98162 6.09358 6.10341 6.17065 6.24098 6.39758 6.40356 6.51650 6.59388 6.60085 6.81300 6.82413 6.93176 7.16813 7.22371 7.39012 7.44310 7.54794 7.64389 7.71406 7.80010 7.99260 8.19583 8.53252 9.04883 9.65139 11.11992 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.027674 B = 0.004339 C = 0.004296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.542886 B = 6452.076315 C = 6515.700897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.530 5.530 3 C 0.057 3.943 4 C 0.100 3.900 5 H 0.058 0.942 6 C -0.152 4.152 7 C -0.121 4.121 8 C -0.156 4.156 9 C 0.059 3.941 10 O -0.361 6.361 11 C 0.089 3.911 12 C -0.096 4.096 13 C -0.107 4.107 14 C 0.043 3.957 15 C -0.497 4.497 16 H 0.054 0.946 17 C 0.061 3.939 18 N -0.892 5.892 19 Si 0.882 3.118 20 H -0.282 1.282 21 H -0.288 1.288 22 H -0.275 1.275 23 C -0.103 4.103 24 C -0.132 4.132 25 H 0.071 0.929 26 H 0.054 0.946 27 H 0.034 0.966 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.089 0.911 37 H 0.046 0.954 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.043 0.957 41 H 0.032 0.968 42 H 0.046 0.954 43 H 0.023 0.977 44 H 0.257 0.743 45 H 0.011 0.989 46 H 0.089 0.911 47 H 0.029 0.971 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.618 7.802 12.780 17.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.252 5.252 3 C -0.072 4.072 4 C 0.041 3.959 5 H 0.076 0.924 6 C -0.190 4.190 7 C -0.159 4.159 8 C -0.194 4.194 9 C -0.018 4.018 10 O -0.279 6.279 11 C -0.019 4.019 12 C -0.134 4.134 13 C -0.145 4.145 14 C 0.025 3.975 15 C -0.536 4.536 16 H 0.073 0.927 17 C -0.140 4.140 18 N -0.531 5.531 19 Si 0.710 3.290 20 H -0.209 1.209 21 H -0.214 1.214 22 H -0.200 1.200 23 C -0.141 4.141 24 C -0.171 4.171 25 H 0.090 0.910 26 H 0.073 0.927 27 H 0.053 0.947 28 H 0.074 0.926 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.107 0.893 37 H 0.064 0.936 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.061 0.939 41 H 0.050 0.950 42 H 0.065 0.935 43 H 0.041 0.959 44 H 0.067 0.933 45 H 0.030 0.970 46 H 0.107 0.893 47 H 0.048 0.952 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 8.556 7.600 13.156 17.437 hybrid contribution -1.010 0.601 -1.018 1.555 sum 7.546 8.201 12.137 16.478 Atomic orbital electron populations 1.22405 0.87841 1.02426 0.99939 1.62263 1.07630 1.11948 1.43346 1.22146 0.93959 0.91366 0.99690 1.22090 0.96789 0.93441 0.83556 0.92402 1.22203 0.96566 0.98369 1.01850 1.21566 0.96851 1.01376 0.96088 1.22203 1.01198 0.98607 0.97373 1.22504 0.85080 0.95217 0.99002 1.88040 1.26064 1.87979 1.25838 1.21740 0.98017 0.94137 0.87957 1.21428 1.01719 0.93282 0.96932 1.21550 0.97388 0.98364 0.97162 1.18692 0.95459 0.91951 0.91424 1.21154 0.91264 1.38480 1.02675 0.92741 1.24932 0.97650 0.95676 0.95720 1.69877 1.34769 1.41231 1.07260 0.86757 0.86758 0.78347 0.77140 1.20881 1.21395 1.19965 1.21448 0.94991 0.98947 0.98732 1.22021 1.02569 0.96700 0.95795 0.91037 0.92697 0.94729 0.92585 0.90934 0.90943 0.91191 0.91741 0.91854 0.91290 0.91328 0.89318 0.93554 0.91828 0.91123 0.93855 0.94961 0.93507 0.95902 0.93260 0.96986 0.89306 0.95192 0.90590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 8.80 60.06 0.53 0.89 16 2 N -0.53 -8.94 4.63 -234.88 -1.09 -10.03 16 3 C 0.06 0.84 4.55 -3.82 -0.02 0.82 16 4 C 0.10 1.35 2.74 -26.68 -0.07 1.28 16 5 H 0.06 0.85 6.73 -51.93 -0.35 0.50 16 6 C -0.15 -1.68 5.42 -26.59 -0.14 -1.82 16 7 C -0.12 -1.16 6.03 -26.55 -0.16 -1.32 16 8 C -0.16 -1.44 6.14 -26.59 -0.16 -1.60 16 9 C 0.06 0.65 6.84 37.20 0.25 0.91 16 10 O -0.36 -5.19 10.35 -35.23 -0.36 -5.56 16 11 C 0.09 1.65 2.14 -67.71 -0.15 1.51 16 12 C -0.10 -1.87 4.77 -26.74 -0.13 -2.00 16 13 C -0.11 -2.23 5.41 -26.73 -0.14 -2.38 16 14 C 0.04 1.06 2.59 -91.77 -0.24 0.82 16 15 C -0.50 -13.12 6.61 -34.44 -0.23 -13.35 16 16 H 0.05 1.44 6.71 -52.49 -0.35 1.08 16 17 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 18 N -0.89 -25.12 11.32 55.43 0.63 -24.49 16 19 Si 0.88 21.08 29.54 -169.99 -5.02 16.06 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 23 C -0.10 -2.39 5.24 -26.70 -0.14 -2.53 16 24 C -0.13 -2.73 4.34 -26.70 -0.12 -2.85 16 25 H 0.07 1.21 6.49 -51.92 -0.34 0.87 16 26 H 0.05 0.80 7.90 -51.93 -0.41 0.39 16 27 H 0.03 0.61 6.12 -51.93 -0.32 0.29 16 28 H 0.06 0.85 5.88 -51.93 -0.31 0.54 16 29 H 0.07 1.02 7.78 -51.93 -0.40 0.62 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.06 1.19 6.68 -51.93 -0.35 0.84 16 39 H 0.07 1.48 4.97 -51.93 -0.26 1.22 16 40 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 43 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 45 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 46 H 0.09 2.33 6.07 -51.93 -0.32 2.02 16 47 H 0.03 0.58 6.24 -51.93 -0.32 0.25 16 48 H 0.08 1.75 5.40 -51.93 -0.28 1.47 16 LS Contribution 345.19 15.07 5.20 5.20 Total: -1.00 -27.82 345.19 -10.28 -38.10 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -8.63 Total: 0.78 kcal Atomic # 6 Polarization: -19.06 SS G_CDS: -1.01 Total: -20.07 kcal Atomic # 7 Polarization: -34.06 SS G_CDS: -0.46 Total: -34.52 kcal Atomic # 8 Polarization: -5.19 SS G_CDS: -0.36 Total: -5.56 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -27.82 -10.28 -38.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173339726.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.645 kcal (2) G-P(sol) polarization free energy of solvation -27.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds