Wall clock time and date at job start Tue Mar 31 2020 05:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42905 * 113.99850 * 2 1 4 4 H 1.08995 * 109.51813 * 330.11713 * 3 2 1 5 5 C 1.53110 * 109.52643 * 90.31369 * 3 2 1 6 6 C 1.53036 * 109.28060 * 177.55902 * 5 3 2 7 7 N 1.46848 * 109.52420 * 300.82292 * 6 5 3 8 8 C 1.46900 * 111.00202 * 185.84091 * 7 6 5 9 9 C 1.52997 * 109.47217 * 64.58792 * 8 7 6 10 10 C 1.53005 * 109.47123 * 180.02562 * 9 8 7 11 11 C 1.53005 * 109.46867 * 60.00280 * 10 9 8 12 12 C 1.50703 * 109.46892 * 180.02562 * 11 10 9 13 13 H 1.07994 * 119.99548 * 119.99697 * 12 11 10 14 14 C 1.37871 * 119.99880 * 300.00241 * 12 11 10 15 15 N 1.31509 * 120.00260 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99773 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47034 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.47051 * 119.99423 * 16 14 12 19 19 H 1.48499 * 109.47006 * 239.99441 * 16 14 12 20 20 C 1.52997 * 109.47020 * 299.99783 * 11 10 9 21 21 C 1.53005 * 109.47123 * 60.00374 * 20 11 10 22 22 C 1.46840 * 111.19718 * 61.73601 * 7 6 5 23 23 H 1.09001 * 109.46448 * 58.28081 * 22 7 6 24 24 C 1.53002 * 109.46139 * 178.24280 * 22 7 6 25 25 C 1.53033 * 109.52733 * 298.26093 * 22 7 6 26 26 H 1.08994 * 109.47489 * 300.00526 * 1 2 3 27 27 H 1.09006 * 109.47257 * 60.00712 * 1 2 3 28 28 H 1.09002 * 109.47135 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.50300 * 297.49898 * 5 3 2 30 30 H 1.09005 * 109.50450 * 57.57837 * 5 3 2 31 31 H 1.09004 * 109.46298 * 180.80052 * 6 5 3 32 32 H 1.09000 * 109.46170 * 60.83884 * 6 5 3 33 33 H 1.08994 * 109.47192 * 184.59072 * 8 7 6 34 34 H 1.09001 * 109.47642 * 300.00185 * 9 8 7 35 35 H 1.09003 * 109.47147 * 60.00604 * 9 8 7 36 36 H 1.08994 * 109.47104 * 300.00169 * 10 9 8 37 37 H 1.09001 * 109.46902 * 180.02562 * 10 9 8 38 38 H 1.08994 * 109.47349 * 60.00039 * 11 10 9 39 39 H 0.97004 * 120.00240 * 180.02562 * 15 14 12 40 40 H 1.09001 * 109.47642 * 300.00354 * 20 11 10 41 41 H 1.09003 * 109.47147 * 179.97438 * 20 11 10 42 42 H 1.09002 * 109.47423 * 179.97438 * 21 20 11 43 43 H 1.08994 * 109.47104 * 59.99831 * 21 20 11 44 44 H 1.09003 * 109.47247 * 52.92734 * 24 22 7 45 45 H 1.09003 * 109.47450 * 172.92774 * 24 22 7 46 46 H 1.08998 * 109.47561 * 292.92962 * 24 22 7 47 47 H 1.09002 * 109.50523 * 179.12518 * 25 22 7 48 48 H 1.09000 * 109.50193 * 299.19456 * 25 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3445 2.0005 -0.5118 5 6 2.2255 1.7698 1.4430 6 6 2.9036 3.1418 1.4366 7 7 4.1908 3.0497 0.7358 8 6 4.9330 4.3139 0.8297 9 6 5.2971 4.5841 2.2910 10 6 6.0696 5.9012 2.3889 11 6 5.1993 7.0434 1.8606 12 6 5.9604 8.3405 1.9564 13 1 6.1637 8.9145 1.0645 14 6 6.3973 8.7944 3.1828 15 7 6.1495 8.0957 4.2690 16 14 7.3401 10.4027 3.3017 17 1 7.4861 10.9922 1.9466 18 1 6.5992 11.3474 4.1757 19 1 8.6849 10.1467 3.8773 20 6 4.8352 6.7731 0.3993 21 6 4.0627 5.4561 0.3014 22 6 4.0052 2.6512 -0.6653 23 1 3.3595 3.3728 -1.1657 24 6 5.3638 2.6102 -1.3678 25 6 3.3600 1.2646 -0.7215 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5137 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.2630 1.8420 1.9496 30 1 2.8588 1.0527 1.9654 31 1 3.0712 3.4689 2.4628 32 1 2.2630 3.8611 0.9264 33 1 5.8438 4.2456 0.2350 34 1 4.3863 4.6525 2.8858 35 1 5.9168 3.7703 2.6675 36 1 6.9804 5.8333 1.7941 37 1 6.3294 6.0935 3.4299 38 1 4.2885 7.1113 2.4554 39 1 6.4565 8.4152 5.1319 40 1 5.7460 6.7052 -0.1956 41 1 4.2148 7.5866 0.0231 42 1 3.8028 5.2637 -0.7396 43 1 3.1519 5.5240 0.8963 44 1 6.0500 1.9857 -0.7957 45 1 5.2431 2.1950 -2.3684 46 1 5.7663 3.6205 -1.4398 47 1 3.2083 0.9758 -1.7616 48 1 4.0121 0.5398 -0.2341 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173340540.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:16 Heat of formation + Delta-G solvation = -66.898206 kcal Electronic energy + Delta-G solvation = -23761.422501 eV Core-core repulsion = 20622.113372 eV Total energy + Delta-G solvation = -3139.309128 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.05611 -38.12548 -36.24076 -33.14042 -32.45432 -31.45672 -29.74936 -28.36919 -27.15149 -26.43724 -24.57955 -23.39338 -22.00701 -21.34782 -20.48416 -19.35562 -18.32296 -16.60058 -16.30405 -15.94032 -15.43302 -15.29156 -15.04070 -14.56677 -13.94220 -13.71071 -13.43194 -13.35402 -13.04934 -12.65911 -12.46656 -12.08085 -12.01569 -11.88094 -11.79847 -11.51562 -11.32341 -11.18831 -11.05993 -10.95043 -10.84091 -10.61956 -10.57747 -10.34890 -10.12455 -10.02572 -9.75238 -9.53686 -9.29432 -8.87730 -8.68001 -8.26673 -7.86951 -5.94980 -4.00951 3.30657 3.38939 3.42676 3.58809 4.08590 4.46402 4.71915 4.77911 4.96599 5.08429 5.15405 5.17376 5.30892 5.34108 5.35123 5.42994 5.46172 5.48930 5.57207 5.63186 5.76745 5.83366 5.88807 5.91798 5.95893 6.01915 6.16790 6.19438 6.23392 6.30417 6.38191 6.45594 6.56035 6.62621 6.75439 6.83097 6.92661 7.08229 7.14101 7.30504 7.42559 7.47932 7.59082 7.79479 8.05939 8.21013 8.51324 9.03440 9.63617 11.10474 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.035542 B = 0.003692 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.617008 B = 7582.246212 C = 7880.802191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.386 6.386 3 C 0.088 3.912 4 H 0.055 0.945 5 C -0.136 4.136 6 C 0.053 3.947 7 N -0.529 5.529 8 C 0.085 3.915 9 C -0.106 4.106 10 C -0.108 4.108 11 C 0.049 3.951 12 C -0.512 4.512 13 H 0.053 0.947 14 C 0.061 3.939 15 N -0.890 5.890 16 Si 0.887 3.113 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.285 1.285 20 C -0.103 4.103 21 C -0.146 4.146 22 C 0.083 3.917 23 H 0.040 0.960 24 C -0.147 4.147 25 C -0.106 4.106 26 H 0.040 0.960 27 H 0.038 0.962 28 H 0.083 0.917 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.035 0.965 33 H 0.082 0.918 34 H 0.051 0.949 35 H 0.049 0.951 36 H 0.032 0.968 37 H 0.092 0.908 38 H 0.022 0.978 39 H 0.258 0.742 40 H 0.046 0.954 41 H 0.043 0.957 42 H 0.042 0.958 43 H 0.056 0.944 44 H 0.065 0.935 45 H 0.056 0.944 46 H 0.061 0.939 47 H 0.067 0.933 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.268 -14.037 -8.692 18.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.305 6.305 3 C 0.031 3.969 4 H 0.073 0.927 5 C -0.174 4.174 6 C -0.075 4.075 7 N -0.253 5.253 8 C -0.022 4.022 9 C -0.144 4.144 10 C -0.146 4.146 11 C 0.031 3.969 12 C -0.550 4.550 13 H 0.071 0.929 14 C -0.140 4.140 15 N -0.529 5.529 16 Si 0.716 3.284 17 H -0.199 1.199 18 H -0.211 1.211 19 H -0.211 1.211 20 C -0.142 4.142 21 C -0.185 4.185 22 C -0.026 4.026 23 H 0.058 0.942 24 C -0.204 4.204 25 C -0.143 4.143 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.101 0.899 29 H 0.081 0.919 30 H 0.097 0.903 31 H 0.104 0.896 32 H 0.053 0.947 33 H 0.100 0.900 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.051 0.949 37 H 0.110 0.890 38 H 0.040 0.960 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.075 0.925 44 H 0.084 0.916 45 H 0.075 0.925 46 H 0.080 0.920 47 H 0.086 0.914 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.849 -14.576 -8.277 18.509 hybrid contribution -0.291 1.783 -0.231 1.821 sum -8.139 -12.793 -8.509 17.387 Atomic orbital electron populations 1.22751 0.81517 1.02420 0.99846 1.87906 1.19277 1.28219 1.95106 1.22235 0.94763 0.83944 0.95981 0.92720 1.22085 1.00568 0.97967 0.96779 1.22073 0.89942 0.95197 1.00264 1.62286 1.18624 1.32149 1.12206 1.21869 0.96169 0.85369 0.98778 1.21671 1.00226 0.99101 0.93377 1.21603 0.97140 0.91710 1.04182 1.18645 0.95353 0.93461 0.89434 1.21275 1.35078 1.05730 0.92920 0.92870 1.24960 0.96144 0.96964 0.95939 1.69885 1.46826 1.38014 0.98173 0.86613 0.79767 0.84079 0.77988 1.19895 1.21142 1.21082 1.21561 0.98008 0.93806 1.00794 1.22197 0.99660 0.97678 0.98938 1.21500 0.96639 0.94934 0.89488 0.94207 1.21886 0.96496 1.02554 0.99456 1.21684 0.94879 0.97697 1.00085 0.94113 0.94301 0.89876 0.91890 0.90290 0.89644 0.94712 0.89958 0.93051 0.93202 0.94876 0.88969 0.95950 0.93182 0.93511 0.93797 0.93962 0.92542 0.91581 0.92549 0.91974 0.91425 0.90240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.82 101.05 1.09 1.37 16 2 O -0.39 -4.59 10.35 -35.23 -0.36 -4.95 16 3 C 0.09 1.03 2.68 -26.61 -0.07 0.96 16 4 H 0.05 0.61 7.79 -51.93 -0.40 0.20 16 5 C -0.14 -1.65 5.72 -26.66 -0.15 -1.80 16 6 C 0.05 0.74 4.57 -3.83 -0.02 0.72 16 7 N -0.53 -7.69 4.45 -218.77 -0.97 -8.66 16 8 C 0.09 1.43 1.89 -67.71 -0.13 1.30 16 9 C -0.11 -2.03 5.10 -26.73 -0.14 -2.16 16 10 C -0.11 -2.50 4.98 -26.73 -0.13 -2.63 16 11 C 0.05 1.21 2.10 -91.77 -0.19 1.02 16 12 C -0.51 -14.01 8.56 -34.44 -0.29 -14.30 16 13 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 14 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 15 N -0.89 -25.31 11.32 55.43 0.63 -24.68 16 16 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 17 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 20 C -0.10 -2.13 5.14 -26.73 -0.14 -2.27 16 21 C -0.15 -2.53 4.48 -26.73 -0.12 -2.64 16 22 C 0.08 1.05 2.09 -67.73 -0.14 0.91 16 23 H 0.04 0.53 6.83 -51.93 -0.35 0.17 16 24 C -0.15 -1.73 8.53 37.16 0.32 -1.41 16 25 C -0.11 -1.23 5.02 -26.65 -0.13 -1.36 16 26 H 0.04 0.33 7.96 -51.93 -0.41 -0.08 16 27 H 0.04 0.30 8.09 -51.93 -0.42 -0.12 16 28 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.69 7.96 -51.93 -0.41 0.28 16 30 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.09 1.27 6.16 -51.93 -0.32 0.95 16 32 H 0.03 0.49 6.58 -51.93 -0.34 0.15 16 33 H 0.08 1.40 5.87 -51.93 -0.31 1.09 16 34 H 0.05 1.00 6.39 -51.93 -0.33 0.67 16 35 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 38 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 40 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.04 0.67 6.77 -51.93 -0.35 0.32 16 43 H 0.06 1.00 6.47 -51.93 -0.34 0.67 16 44 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.06 0.78 6.57 -51.93 -0.34 0.44 16 47 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 349.10 15.07 5.26 5.26 Total: -1.00 -28.02 349.10 -9.65 -37.67 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -8.84 Total: -0.17 kcal Atomic # 6 Polarization: -20.39 SS G_CDS: -0.34 Total: -20.73 kcal Atomic # 7 Polarization: -33.00 SS G_CDS: -0.35 Total: -33.34 kcal Atomic # 8 Polarization: -4.59 SS G_CDS: -0.36 Total: -4.95 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -28.02 -9.65 -37.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173340540.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.230 kcal (2) G-P(sol) polarization free energy of solvation -28.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds