Wall clock time and date at job start Tue Mar 31 2020 05:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 114.00359 * 2 1 4 4 H 1.09002 * 109.52078 * 30.13468 * 3 2 1 5 5 C 1.53112 * 109.52464 * 270.00453 * 3 2 1 6 6 C 1.53038 * 109.28082 * 297.68159 * 5 3 2 7 7 N 1.46846 * 109.52096 * 300.82563 * 6 5 3 8 8 C 1.46903 * 110.99706 * 185.83301 * 7 6 5 9 9 C 1.53002 * 109.47154 * 63.78481 * 8 7 6 10 10 C 1.52997 * 109.47674 * 179.97438 * 9 8 7 11 11 C 1.53000 * 109.46893 * 59.99867 * 10 9 8 12 12 C 1.50701 * 109.47052 * 180.02562 * 11 10 9 13 13 H 1.08000 * 120.00501 * 120.00442 * 12 11 10 14 14 C 1.37879 * 119.99843 * 299.99628 * 12 11 10 15 15 N 1.31519 * 119.99747 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00009 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47256 * 59.99916 * 16 14 12 18 18 H 1.48502 * 109.46835 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47011 * 299.99780 * 16 14 12 20 20 C 1.53008 * 109.47354 * 300.00369 * 11 10 9 21 21 C 1.52993 * 109.46954 * 59.99752 * 20 11 10 22 22 C 1.46844 * 111.20354 * 61.74133 * 7 6 5 23 23 H 1.09004 * 109.46771 * 58.26759 * 22 7 6 24 24 C 1.52998 * 109.46787 * 178.25077 * 22 7 6 25 25 C 1.53043 * 109.51956 * 298.25531 * 22 7 6 26 26 H 1.08999 * 109.47491 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46922 * 299.99669 * 1 2 3 28 28 H 1.08998 * 109.47394 * 59.99308 * 1 2 3 29 29 H 1.09000 * 109.50364 * 177.74560 * 5 3 2 30 30 H 1.08999 * 109.50723 * 57.62427 * 5 3 2 31 31 H 1.08994 * 109.46827 * 180.80449 * 6 5 3 32 32 H 1.09002 * 109.45041 * 60.83180 * 6 5 3 33 33 H 1.09000 * 109.47316 * 183.78295 * 8 7 6 34 34 H 1.09000 * 109.46857 * 300.00095 * 9 8 7 35 35 H 1.09004 * 109.47219 * 59.99583 * 9 8 7 36 36 H 1.08999 * 109.46658 * 300.00266 * 10 9 8 37 37 H 1.08990 * 109.47452 * 179.97438 * 10 9 8 38 38 H 1.09000 * 109.47112 * 60.00141 * 11 10 9 39 39 H 0.96997 * 119.99448 * 179.97438 * 15 14 12 40 40 H 1.09010 * 109.46824 * 300.00016 * 20 11 10 41 41 H 1.08996 * 109.46930 * 180.02562 * 20 11 10 42 42 H 1.09003 * 109.46970 * 180.02562 * 21 20 11 43 43 H 1.09000 * 109.47196 * 60.00422 * 21 20 11 44 44 H 1.09004 * 109.47123 * 53.14050 * 24 22 7 45 45 H 1.08995 * 109.47435 * 173.14546 * 24 22 7 46 46 H 1.09000 * 109.46756 * 293.14934 * 24 22 7 47 47 H 1.08999 * 109.50038 * 179.11783 * 25 22 7 48 48 H 1.08993 * 109.50425 * 299.23540 * 25 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3468 1.9996 0.5158 5 6 2.2183 1.7729 -1.4431 6 6 3.1983 0.8291 -2.1437 7 7 4.4772 0.8256 -1.4221 8 6 5.4863 0.0381 -2.1431 9 6 5.7769 0.6958 -3.4937 10 6 6.8283 -0.1239 -4.2444 11 6 6.3026 -1.5428 -4.4707 12 6 7.3385 -2.3504 -5.2096 13 1 7.7482 -3.2432 -4.7609 14 6 7.7631 -1.9494 -6.4586 15 7 7.2644 -0.8618 -7.0048 16 14 9.0465 -2.9507 -7.3748 17 1 8.5358 -4.3277 -7.5945 18 1 9.3294 -2.3121 -8.6854 19 1 10.2949 -3.0078 -6.5728 20 6 6.0120 -2.2005 -3.1201 21 6 4.9607 -1.3808 -2.3694 22 6 4.3104 0.3351 -0.0481 23 1 3.8921 -0.6712 -0.0698 24 6 5.6705 0.3068 0.6519 25 6 3.3636 1.2644 0.7151 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 2.6245 2.7844 -1.4429 30 1 1.2642 1.7634 -1.9699 31 1 3.3597 1.1674 -3.1672 32 1 2.7852 -0.1796 -2.1555 33 1 6.4029 -0.0038 -1.5547 34 1 4.8603 0.7377 -4.0820 35 1 6.1518 1.7065 -3.3325 36 1 7.7447 -0.1655 -3.6558 37 1 7.0349 0.3443 -5.2067 38 1 5.3861 -1.5012 -5.0592 39 1 7.5634 -0.5796 -7.8833 40 1 6.9286 -2.2421 -2.5315 41 1 5.6380 -3.2115 -3.2813 42 1 4.7540 -1.8491 -1.4071 43 1 4.0442 -1.3392 -2.9579 44 1 6.1434 1.2853 0.5668 45 1 5.5324 0.0604 1.7046 46 1 6.3049 -0.4452 0.1828 47 1 3.2277 0.8914 1.7303 48 1 3.7878 2.2678 0.7493 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173340542.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:21 Heat of formation + Delta-G solvation = -64.956710 kcal Electronic energy + Delta-G solvation = -24055.181748 eV Core-core repulsion = 20915.956810 eV Total energy + Delta-G solvation = -3139.224938 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.04085 -38.01045 -36.00339 -33.07696 -32.33493 -31.43567 -29.67528 -28.28420 -27.11345 -26.37240 -24.69192 -23.40041 -21.96324 -21.24011 -20.33516 -19.20580 -18.22396 -16.33145 -16.18881 -15.90076 -15.49955 -15.23193 -15.04366 -14.52226 -13.84573 -13.63012 -13.47666 -13.08247 -12.72196 -12.66860 -12.39366 -12.20912 -11.95333 -11.83903 -11.81478 -11.55101 -11.22555 -11.07912 -10.97502 -10.93380 -10.80713 -10.64358 -10.45127 -10.26919 -10.02331 -9.82732 -9.70653 -9.48440 -9.24311 -8.80231 -8.63727 -8.21972 -7.72745 -5.90958 -3.96858 3.35789 3.40277 3.43111 3.69098 4.24725 4.49686 4.72412 4.78461 4.96170 5.13092 5.20018 5.23238 5.37926 5.39683 5.50161 5.52334 5.55074 5.63425 5.67265 5.74314 5.83430 5.84401 5.93284 6.01455 6.04959 6.09348 6.22473 6.26420 6.31771 6.39492 6.46814 6.56311 6.64127 6.70481 6.83486 6.90728 7.01502 7.13187 7.21065 7.36368 7.53861 7.59994 7.65751 7.83301 8.11273 8.25665 8.55876 9.07150 9.67257 11.14445 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.030513 B = 0.004009 C = 0.003917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.417503 B = 6983.090501 C = 7147.453671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.380 6.380 3 C 0.086 3.914 4 H 0.056 0.944 5 C -0.137 4.137 6 C 0.056 3.944 7 N -0.529 5.529 8 C 0.087 3.913 9 C -0.106 4.106 10 C -0.107 4.107 11 C 0.050 3.950 12 C -0.513 4.513 13 H 0.052 0.948 14 C 0.061 3.939 15 N -0.891 5.891 16 Si 0.888 3.112 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.278 1.278 20 C -0.104 4.104 21 C -0.144 4.144 22 C 0.083 3.917 23 H 0.049 0.951 24 C -0.148 4.148 25 C -0.105 4.105 26 H 0.082 0.918 27 H 0.037 0.963 28 H 0.039 0.961 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.043 0.957 33 H 0.080 0.920 34 H 0.051 0.949 35 H 0.048 0.952 36 H 0.032 0.968 37 H 0.091 0.909 38 H 0.022 0.978 39 H 0.259 0.741 40 H 0.045 0.955 41 H 0.043 0.957 42 H 0.043 0.957 43 H 0.056 0.944 44 H 0.062 0.938 45 H 0.053 0.947 46 H 0.059 0.941 47 H 0.067 0.933 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.991 5.966 14.868 19.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.299 6.299 3 C 0.029 3.971 4 H 0.074 0.926 5 C -0.175 4.175 6 C -0.072 4.072 7 N -0.253 5.253 8 C -0.021 4.021 9 C -0.144 4.144 10 C -0.146 4.146 11 C 0.032 3.968 12 C -0.551 4.551 13 H 0.070 0.930 14 C -0.140 4.140 15 N -0.530 5.530 16 Si 0.716 3.284 17 H -0.204 1.204 18 H -0.214 1.214 19 H -0.204 1.204 20 C -0.142 4.142 21 C -0.183 4.183 22 C -0.025 4.025 23 H 0.067 0.933 24 C -0.206 4.206 25 C -0.143 4.143 26 H 0.101 0.899 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.061 0.939 33 H 0.098 0.902 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.051 0.949 37 H 0.110 0.890 38 H 0.040 0.960 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.074 0.926 44 H 0.081 0.919 45 H 0.072 0.928 46 H 0.078 0.922 47 H 0.086 0.914 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.702 6.407 14.738 19.308 hybrid contribution 0.112 -1.149 -0.634 1.317 sum -10.590 5.258 14.104 18.404 Atomic orbital electron populations 1.22742 0.81703 1.02485 0.99570 1.87959 1.19030 1.27934 1.95015 1.22212 0.94704 0.84306 0.95910 0.92570 1.22074 0.99245 1.00425 0.95756 1.21984 0.89099 0.98364 0.97748 1.62307 1.08048 1.53647 1.01336 1.21828 0.94105 0.90712 0.95441 1.21669 1.00254 0.98461 0.93968 1.21593 0.95042 0.97770 1.00186 1.18637 0.96160 0.91888 0.90165 1.21219 1.22866 1.09571 1.01425 0.92982 1.24957 0.96492 0.95098 0.97404 1.69873 1.43421 1.23293 1.16386 0.86728 0.82226 0.80405 0.79027 1.20421 1.21373 1.20374 1.21564 0.96382 0.97719 0.98532 1.22162 0.99951 0.96991 0.99160 1.21450 0.95062 0.96905 0.89124 0.93281 1.21914 0.96759 1.02568 0.99319 1.21738 0.93212 1.01087 0.98265 0.89914 0.94436 0.94220 0.90462 0.91915 0.90393 0.93918 0.90206 0.93082 0.93364 0.94932 0.89033 0.95975 0.93114 0.93616 0.93851 0.93853 0.92574 0.91927 0.92780 0.92164 0.91445 0.90087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.82 101.05 1.09 1.38 16 2 O -0.38 -4.73 9.22 -35.23 -0.32 -5.05 16 3 C 0.09 0.96 2.93 -26.61 -0.08 0.89 16 4 H 0.06 0.53 7.79 -51.93 -0.40 0.12 16 5 C -0.14 -1.63 5.79 -26.65 -0.15 -1.78 16 6 C 0.06 0.83 4.45 -3.83 -0.02 0.81 16 7 N -0.53 -8.06 4.46 -218.76 -0.97 -9.03 16 8 C 0.09 1.52 1.88 -67.71 -0.13 1.39 16 9 C -0.11 -2.09 5.08 -26.73 -0.14 -2.22 16 10 C -0.11 -2.55 4.98 -26.73 -0.13 -2.68 16 11 C 0.05 1.26 2.10 -91.77 -0.19 1.06 16 12 C -0.51 -14.29 8.56 -34.44 -0.29 -14.59 16 13 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 14 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 15 N -0.89 -25.66 11.32 55.43 0.63 -25.03 16 16 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 C -0.10 -2.23 5.14 -26.73 -0.14 -2.37 16 21 C -0.14 -2.66 4.49 -26.73 -0.12 -2.78 16 22 C 0.08 1.13 1.94 -67.72 -0.13 1.00 16 23 H 0.05 0.76 6.43 -51.93 -0.33 0.43 16 24 C -0.15 -1.85 8.54 37.16 0.32 -1.54 16 25 C -0.11 -1.19 5.10 -26.65 -0.14 -1.33 16 26 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.04 0.28 8.09 -51.93 -0.42 -0.13 16 28 H 0.04 0.34 7.84 -51.93 -0.41 -0.07 16 29 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.06 0.68 7.84 -51.93 -0.41 0.27 16 31 H 0.08 1.23 6.13 -51.93 -0.32 0.91 16 32 H 0.04 0.69 6.21 -51.93 -0.32 0.37 16 33 H 0.08 1.42 5.91 -51.93 -0.31 1.12 16 34 H 0.05 1.03 6.37 -51.93 -0.33 0.70 16 35 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 38 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 40 H 0.05 0.97 8.14 -51.92 -0.42 0.55 16 41 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.04 0.76 6.74 -51.93 -0.35 0.41 16 43 H 0.06 1.08 6.48 -51.93 -0.34 0.74 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 46 H 0.06 0.82 6.57 -51.93 -0.34 0.48 16 47 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 48 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 347.04 15.07 5.23 5.23 Total: -1.00 -28.66 347.04 -9.59 -38.25 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -8.79 Total: 0.23 kcal Atomic # 6 Polarization: -20.79 SS G_CDS: -0.34 Total: -21.13 kcal Atomic # 7 Polarization: -33.72 SS G_CDS: -0.35 Total: -34.06 kcal Atomic # 8 Polarization: -4.73 SS G_CDS: -0.32 Total: -5.05 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.66 -9.59 -38.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173340542.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.705 kcal (2) G-P(sol) polarization free energy of solvation -28.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds