Wall clock time and date at job start Tue Mar 31 2020 05:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99702 * 2 1 4 4 H 1.09002 * 109.52539 * 29.99484 * 3 2 1 5 5 C 1.53119 * 109.52297 * 269.87322 * 3 2 1 6 6 C 1.53032 * 109.28095 * 182.43979 * 5 3 2 7 7 N 1.46852 * 109.52436 * 59.17998 * 6 5 3 8 8 C 1.46894 * 111.00218 * 174.16025 * 7 6 5 9 9 C 1.53003 * 109.47277 * 58.95652 * 8 7 6 10 10 C 1.52994 * 109.47167 * 180.02562 * 9 8 7 11 11 C 1.52999 * 109.47320 * 59.99925 * 10 9 8 12 12 C 1.50694 * 109.47365 * 60.00000 * 11 10 9 13 13 H 1.08008 * 119.99906 * 245.42977 * 12 11 10 14 14 C 1.37876 * 120.00228 * 65.42467 * 12 11 10 15 15 N 1.31517 * 120.00021 * 9.55192 * 14 12 11 16 16 Si 1.86805 * 119.99953 * 189.54467 * 14 12 11 17 17 H 1.48495 * 109.46723 * 94.99657 * 16 14 12 18 18 H 1.48496 * 109.46911 * 214.99153 * 16 14 12 19 19 H 1.48494 * 109.47062 * 334.99639 * 16 14 12 20 20 C 1.53004 * 109.46908 * 299.99471 * 11 10 9 21 21 C 1.53000 * 109.47191 * 298.95195 * 8 7 6 22 22 C 1.46847 * 111.19363 * 298.25941 * 7 6 5 23 23 H 1.08997 * 109.46524 * 301.72434 * 22 7 6 24 24 C 1.53000 * 109.46067 * 181.74547 * 22 7 6 25 25 C 1.53047 * 109.57900 * 61.70958 * 22 7 6 26 26 H 1.08993 * 109.47413 * 300.00084 * 1 2 3 27 27 H 1.09001 * 109.47256 * 60.00873 * 1 2 3 28 28 H 1.09008 * 109.46701 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.50256 * 302.38217 * 5 3 2 30 30 H 1.09006 * 109.50540 * 62.45622 * 5 3 2 31 31 H 1.09002 * 109.46638 * 179.19237 * 6 5 3 32 32 H 1.08998 * 109.46686 * 299.16570 * 6 5 3 33 33 H 1.09001 * 109.46894 * 178.95214 * 8 7 6 34 34 H 1.09003 * 109.46597 * 300.00117 * 9 8 7 35 35 H 1.08996 * 109.47164 * 59.99514 * 9 8 7 36 36 H 1.08993 * 109.47004 * 299.99185 * 10 9 8 37 37 H 1.09004 * 109.47009 * 179.97438 * 10 9 8 38 38 H 1.09000 * 109.47004 * 179.97438 * 11 10 9 39 39 H 0.96994 * 119.99960 * 179.97438 * 15 14 12 40 40 H 1.09001 * 109.47423 * 300.00532 * 20 11 10 41 41 H 1.08996 * 109.47010 * 180.02562 * 20 11 10 42 42 H 1.08999 * 109.46962 * 299.99953 * 21 8 7 43 43 H 1.08996 * 109.46794 * 60.00416 * 21 8 7 44 44 H 1.08994 * 109.47508 * 60.00063 * 24 22 7 45 45 H 1.08999 * 109.47465 * 179.97438 * 24 22 7 46 46 H 1.08999 * 109.47125 * 299.99546 * 24 22 7 47 47 H 1.09000 * 109.55712 * 180.94261 * 25 22 7 48 48 H 1.09002 * 109.45136 * 60.82101 * 25 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3455 2.0001 0.5136 5 6 2.2212 1.7716 -1.4432 6 6 2.8992 3.1436 -1.4370 7 7 4.1886 3.0507 -0.7402 8 6 4.9304 4.3150 -0.8348 9 6 4.0974 5.4423 -0.2214 10 6 4.8697 6.7592 -0.3205 11 6 5.1520 7.0756 -1.7905 12 6 3.8488 7.2003 -2.5368 13 1 3.5974 6.4867 -3.3076 14 6 2.9771 8.2252 -2.2355 15 7 3.3574 9.1984 -1.4367 16 14 1.2562 8.2317 -2.9620 17 1 0.3093 7.6177 -1.9969 18 1 0.8417 9.6302 -3.2404 19 1 1.2496 7.4524 -4.2260 20 6 5.9852 5.9484 -2.4039 21 6 5.2133 4.6316 -2.3047 22 6 4.0072 2.6504 0.6609 23 1 3.3629 3.3713 1.1641 24 6 5.3679 2.6083 1.3593 25 6 3.3615 1.2640 0.7188 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8901 28 1 -0.3633 -1.0278 -0.0005 29 1 2.8535 1.0556 -1.9681 30 1 1.2573 1.8437 -1.9470 31 1 3.0639 3.4720 -2.4632 32 1 2.2602 3.8623 -0.9240 33 1 5.8729 4.2245 -0.2947 34 1 3.1548 5.5327 -0.7614 35 1 3.8959 5.2166 0.8258 36 1 5.8123 6.6690 0.2193 37 1 4.2760 7.5623 0.1162 38 1 5.7019 8.0141 -1.8611 39 1 2.7443 9.9196 -1.2251 40 1 6.9279 5.8582 -1.8641 41 1 6.1867 6.1740 -3.4511 42 1 5.8068 3.8286 -2.7416 43 1 4.2708 4.7221 -2.8447 44 1 5.8272 3.5959 1.3200 45 1 5.2335 2.3116 2.3995 46 1 6.0124 1.8876 0.8560 47 1 3.2117 0.9744 1.7589 48 1 4.0123 0.5398 0.2289 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173340543.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:24 Heat of formation + Delta-G solvation = -64.268007 kcal Electronic energy + Delta-G solvation = -24346.300611 eV Core-core repulsion = 21207.105537 eV Total energy + Delta-G solvation = -3139.195074 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.96287 -38.08606 -36.26278 -32.90640 -32.35131 -31.42600 -29.61221 -28.20832 -26.96913 -26.33631 -24.67071 -23.54802 -21.95112 -21.25507 -20.52739 -19.26844 -18.31713 -16.50743 -15.86699 -15.81065 -15.27203 -15.16130 -14.98634 -14.56316 -13.95277 -13.66492 -13.42805 -13.28597 -12.97955 -12.67174 -12.37844 -12.07151 -11.80973 -11.72689 -11.60339 -11.47845 -11.27353 -11.09201 -11.01766 -10.86527 -10.84020 -10.56097 -10.51816 -10.50354 -10.04317 -9.98049 -9.72354 -9.40268 -9.13356 -8.90189 -8.65514 -8.26494 -7.70347 -5.99668 -3.98529 3.27490 3.36207 3.38289 3.67841 4.21223 4.44502 4.82580 4.89293 5.07343 5.19685 5.24739 5.27125 5.33497 5.42935 5.47126 5.55055 5.57867 5.62338 5.70838 5.80927 5.88597 5.96079 5.99849 6.01569 6.12607 6.15558 6.26650 6.31769 6.34148 6.44391 6.46457 6.53487 6.57438 6.72131 6.77247 6.89780 7.11146 7.13686 7.17457 7.33061 7.46292 7.58011 7.63021 7.76842 7.95594 8.05859 8.50399 9.04342 9.63131 11.09882 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.017067 B = 0.005800 C = 0.004827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.171165 B = 4826.411198 C = 5798.961795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.387 6.387 3 C 0.088 3.912 4 H 0.055 0.945 5 C -0.135 4.135 6 C 0.053 3.947 7 N -0.529 5.529 8 C 0.088 3.912 9 C -0.133 4.133 10 C -0.096 4.096 11 C 0.042 3.958 12 C -0.501 4.501 13 H 0.055 0.945 14 C 0.064 3.936 15 N -0.889 5.889 16 Si 0.876 3.124 17 H -0.283 1.283 18 H -0.288 1.288 19 H -0.274 1.274 20 C -0.106 4.106 21 C -0.099 4.099 22 C 0.082 3.918 23 H 0.042 0.958 24 C -0.146 4.146 25 C -0.104 4.104 26 H 0.039 0.961 27 H 0.040 0.960 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.086 0.914 32 H 0.039 0.961 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.031 0.969 36 H 0.017 0.983 37 H 0.069 0.931 38 H 0.030 0.970 39 H 0.258 0.742 40 H 0.033 0.967 41 H 0.047 0.953 42 H 0.044 0.956 43 H 0.070 0.930 44 H 0.063 0.937 45 H 0.054 0.946 46 H 0.062 0.938 47 H 0.066 0.934 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.431 -14.684 4.475 15.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.306 6.306 3 C 0.030 3.970 4 H 0.073 0.927 5 C -0.174 4.174 6 C -0.075 4.075 7 N -0.253 5.253 8 C -0.019 4.019 9 C -0.172 4.172 10 C -0.135 4.135 11 C 0.024 3.976 12 C -0.539 4.539 13 H 0.073 0.927 14 C -0.137 4.137 15 N -0.528 5.528 16 Si 0.704 3.296 17 H -0.210 1.210 18 H -0.214 1.214 19 H -0.199 1.199 20 C -0.144 4.144 21 C -0.136 4.136 22 C -0.027 4.027 23 H 0.060 0.940 24 C -0.203 4.203 25 C -0.142 4.142 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.101 0.899 29 H 0.095 0.905 30 H 0.080 0.920 31 H 0.105 0.895 32 H 0.057 0.943 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.050 0.950 36 H 0.036 0.964 37 H 0.087 0.913 38 H 0.048 0.952 39 H 0.068 0.932 40 H 0.051 0.949 41 H 0.066 0.934 42 H 0.063 0.937 43 H 0.088 0.912 44 H 0.082 0.918 45 H 0.073 0.927 46 H 0.081 0.919 47 H 0.085 0.915 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.107 -15.060 4.322 15.707 hybrid contribution -1.902 1.022 0.078 2.161 sum -3.009 -14.038 4.400 15.016 Atomic orbital electron populations 1.22748 0.81558 1.02317 0.99916 1.87892 1.19250 1.28334 1.95129 1.22249 0.94793 0.83860 0.96093 0.92661 1.22088 1.00551 0.98044 0.96681 1.22073 0.89981 0.94996 1.00472 1.62276 1.18674 1.32034 1.12274 1.21780 0.96370 0.86132 0.97638 1.22021 1.01002 0.96397 0.97747 1.21367 0.96742 0.95752 0.99650 1.18695 0.94784 0.92857 0.91307 1.21125 1.02553 1.11027 1.19166 0.92708 1.24925 0.98058 0.95280 0.95479 1.69961 1.35033 1.10581 1.37248 0.86824 0.85928 0.77287 0.79511 1.20950 1.21388 1.19888 1.21530 0.97129 0.95986 0.99737 1.21478 1.00953 0.96525 0.94689 1.21496 0.96597 0.94918 0.89661 0.93966 1.21881 0.96496 1.02696 0.99222 1.21669 0.94827 0.97692 0.99990 0.94280 0.94112 0.89942 0.90475 0.91954 0.89544 0.94299 0.90688 0.90883 0.95041 0.96412 0.91260 0.95165 0.93233 0.94867 0.93376 0.93738 0.91188 0.91791 0.92706 0.91910 0.91508 0.90388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.82 101.05 1.09 1.40 16 2 O -0.39 -5.02 10.35 -35.23 -0.36 -5.39 16 3 C 0.09 1.14 2.67 -26.61 -0.07 1.07 16 4 H 0.06 0.71 7.79 -51.93 -0.40 0.31 16 5 C -0.14 -1.84 5.72 -26.65 -0.15 -1.99 16 6 C 0.05 0.83 4.63 -3.83 -0.02 0.81 16 7 N -0.53 -8.23 4.48 -218.76 -0.98 -9.21 16 8 C 0.09 1.54 1.84 -67.71 -0.12 1.41 16 9 C -0.13 -2.64 4.29 -26.73 -0.11 -2.75 16 10 C -0.10 -2.17 5.30 -26.73 -0.14 -2.32 16 11 C 0.04 1.01 2.45 -91.77 -0.22 0.78 16 12 C -0.50 -13.04 6.63 -34.44 -0.23 -13.27 16 13 H 0.05 1.43 6.54 -52.48 -0.34 1.08 16 14 C 0.06 1.72 5.20 -17.82 -0.09 1.63 16 15 N -0.89 -25.21 12.16 55.43 0.67 -24.54 16 16 Si 0.88 20.94 29.55 -169.99 -5.02 15.91 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 20 C -0.11 -2.15 5.42 -26.75 -0.14 -2.29 16 21 C -0.10 -1.83 4.78 -26.75 -0.13 -1.96 16 22 C 0.08 1.14 2.01 -67.72 -0.14 1.00 16 23 H 0.04 0.64 6.73 -51.93 -0.35 0.29 16 24 C -0.15 -1.82 8.78 37.16 0.33 -1.49 16 25 C -0.10 -1.32 5.03 -26.65 -0.13 -1.45 16 26 H 0.04 0.35 8.09 -51.93 -0.42 -0.07 16 27 H 0.04 0.38 7.95 -51.93 -0.41 -0.03 16 28 H 0.08 0.67 8.14 -51.92 -0.42 0.24 16 29 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.06 0.79 7.95 -51.93 -0.41 0.38 16 31 H 0.09 1.43 6.04 -51.93 -0.31 1.12 16 32 H 0.04 0.66 6.62 -51.93 -0.34 0.32 16 33 H 0.08 1.29 5.90 -51.93 -0.31 0.98 16 34 H 0.07 1.62 5.59 -51.93 -0.29 1.33 16 35 H 0.03 0.59 6.66 -51.93 -0.35 0.24 16 36 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 1.77 6.90 -51.93 -0.36 1.41 16 38 H 0.03 0.81 8.09 -51.93 -0.42 0.39 16 39 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 40 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.07 1.40 4.68 -51.93 -0.24 1.16 16 44 H 0.06 0.86 6.21 -51.93 -0.32 0.54 16 45 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 47 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 344.89 15.07 5.20 5.20 Total: -1.00 -27.38 344.89 -9.44 -36.81 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -8.65 Total: 0.63 kcal Atomic # 6 Polarization: -19.13 SS G_CDS: -0.29 Total: -19.42 kcal Atomic # 7 Polarization: -33.44 SS G_CDS: -0.31 Total: -33.74 kcal Atomic # 8 Polarization: -5.02 SS G_CDS: -0.36 Total: -5.39 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -27.38 -9.44 -36.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173340543.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.456 kcal (2) G-P(sol) polarization free energy of solvation -27.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds