Wall clock time and date at job start Tue Mar 31 2020 05:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50696 * 109.46867 * 2 1 4 4 O 1.20764 * 120.00541 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99958 * 179.97438 * 3 2 1 6 6 C 1.52998 * 109.47239 * 59.99568 * 5 3 2 7 7 C 1.53005 * 109.46747 * 299.99757 * 5 3 2 8 8 C 1.52998 * 109.47179 * 179.97438 * 5 3 2 9 9 N 1.46909 * 109.46789 * 182.72327 * 8 5 3 10 10 C 1.46897 * 111.00011 * 238.84826 * 9 8 5 11 11 C 1.50699 * 109.47043 * 151.05047 * 10 9 8 12 12 H 1.08004 * 120.00117 * 0.20959 * 11 10 9 13 13 C 1.37875 * 119.99862 * 180.20529 * 11 10 9 14 14 N 1.31514 * 120.00385 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99932 * 180.02562 * 13 11 10 16 16 H 1.48510 * 109.47021 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.47413 * 120.00002 * 15 13 11 18 18 H 1.48496 * 109.47527 * 240.00084 * 15 13 11 19 19 C 1.46907 * 110.99637 * 114.90020 * 9 8 5 20 20 C 1.54266 * 110.02790 * 189.01313 * 19 9 8 21 21 C 1.54957 * 104.15711 * 217.13309 * 20 19 9 22 22 C 1.54890 * 102.77799 * 37.88944 * 21 20 19 23 23 C 1.53872 * 110.03082 * 71.79523 * 19 9 8 24 24 H 1.09003 * 109.47369 * 300.00222 * 1 2 3 25 25 H 1.09000 * 109.47425 * 59.99742 * 1 2 3 26 26 H 1.09000 * 109.47224 * 179.97438 * 1 2 3 27 27 H 1.08990 * 109.47210 * 239.99785 * 2 1 3 28 28 H 1.09004 * 109.46952 * 119.99674 * 2 1 3 29 29 H 1.09001 * 109.47577 * 183.46751 * 6 5 3 30 30 H 1.09003 * 109.47246 * 303.47224 * 6 5 3 31 31 H 1.09004 * 109.46967 * 63.46835 * 6 5 3 32 32 H 1.08988 * 109.47476 * 300.00002 * 7 5 3 33 33 H 1.09006 * 109.47269 * 60.00323 * 7 5 3 34 34 H 1.09001 * 109.46669 * 179.97438 * 7 5 3 35 35 H 1.09004 * 109.47268 * 62.72749 * 8 5 3 36 36 H 1.08999 * 109.47105 * 302.72429 * 8 5 3 37 37 H 1.09001 * 109.47469 * 271.05310 * 10 9 8 38 38 H 1.09003 * 109.46744 * 31.05407 * 10 9 8 39 39 H 0.97002 * 119.99915 * 180.02562 * 14 13 11 40 40 H 1.09003 * 110.01186 * 310.40045 * 19 9 8 41 41 H 1.08994 * 110.48892 * 335.78496 * 20 19 9 42 42 H 1.09002 * 110.48293 * 98.42775 * 20 19 9 43 43 H 1.09004 * 110.72555 * 279.57863 * 21 20 19 44 44 H 1.09002 * 110.92169 * 156.29599 * 21 20 19 45 45 H 1.09003 * 110.48909 * 203.40161 * 22 21 20 46 46 H 1.09002 * 110.59744 * 80.81582 * 22 21 20 47 47 H 1.09003 * 110.02752 * 238.56296 * 23 19 9 48 48 H 1.08993 * 110.03681 * 359.97438 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 8 1.2475 2.3387 0.0005 5 6 3.5139 1.6962 0.0006 6 6 4.1477 1.0801 -1.2482 7 6 4.1465 1.0805 1.2503 8 6 3.7517 3.2076 -0.0002 9 7 5.1945 3.4762 -0.0654 10 6 5.6367 4.2620 1.0943 11 6 7.0760 3.9378 1.4014 12 1 7.6100 3.2224 0.7935 13 6 7.7112 4.5546 2.4583 14 7 7.0609 5.4254 3.1988 15 14 9.4955 4.1534 2.8386 16 1 9.9959 3.1506 1.8641 17 1 10.3128 5.3893 2.7399 18 1 9.5968 3.6015 4.2135 19 6 5.5485 4.1486 -1.3227 20 6 7.0824 4.2175 -1.4714 21 6 7.3379 5.5976 -2.1280 22 6 6.2855 6.5036 -1.4418 23 6 5.0418 5.6014 -1.3042 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 5.2275 1.2257 -1.2173 30 1 3.9257 0.0134 -1.2798 31 1 3.7414 1.5622 -2.1374 32 1 3.6951 1.5194 2.1399 33 1 3.9771 0.0037 1.2504 34 1 5.2182 1.2794 1.2505 35 1 3.3425 3.6403 0.9128 36 1 3.2598 3.6524 -0.8652 37 1 5.5434 5.3246 0.8702 38 1 5.0170 4.0167 1.9569 39 1 7.5079 5.8596 3.9422 40 1 5.1151 3.6127 -2.1672 41 1 7.5631 4.1650 -0.4946 42 1 7.4394 3.4151 -2.1170 43 1 7.1652 5.5512 -3.2033 44 1 8.3476 5.9490 -1.9152 45 1 6.0620 7.3689 -2.0659 46 1 6.6359 6.8226 -0.4602 47 1 4.3633 5.7709 -2.1403 48 1 4.5329 5.8075 -0.3626 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208916564.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:13 Heat of formation + Delta-G solvation = -48.336738 kcal Electronic energy + Delta-G solvation = -24152.308989 eV Core-core repulsion = 21013.804747 eV Total energy + Delta-G solvation = -3138.504242 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 2.29 seconds Orbital eigenvalues (eV) -39.97111 -38.50834 -35.57680 -33.50809 -32.74904 -31.96572 -28.17073 -27.66622 -26.91994 -26.63196 -25.07974 -24.23285 -21.98812 -20.92025 -19.90467 -18.39471 -17.92126 -16.41074 -16.15298 -15.44786 -15.31866 -14.98269 -14.92888 -14.33925 -13.73948 -13.67193 -13.29421 -12.85946 -12.69823 -12.36895 -12.23782 -12.09379 -11.87656 -11.73065 -11.60893 -11.37389 -11.18442 -11.08659 -11.03355 -10.78869 -10.73902 -10.51249 -10.49250 -10.41441 -10.27830 -10.25017 -9.99149 -9.82855 -9.36478 -9.00774 -8.90851 -8.35102 -7.12761 -6.00079 -3.97915 2.21302 3.30432 3.39202 3.42196 4.12603 4.44016 4.95503 4.99794 5.04281 5.13430 5.30241 5.31043 5.34668 5.38906 5.47809 5.57967 5.67563 5.73487 5.86764 5.88107 5.95568 6.01984 6.07480 6.11597 6.19432 6.22540 6.25015 6.32637 6.35144 6.38727 6.45568 6.49225 6.52128 6.64137 6.69455 6.71228 6.91582 6.95669 7.00586 7.28391 7.48070 7.55965 7.74769 7.87585 8.20591 8.33530 8.60095 9.06330 9.62181 11.09414 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.016667 B = 0.005673 C = 0.004815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.593555 B = 4934.268434 C = 5813.955179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.177 4.177 3 C 0.364 3.636 4 O -0.459 6.459 5 C -0.099 4.099 6 C -0.126 4.126 7 C -0.128 4.128 8 C 0.072 3.928 9 N -0.525 5.525 10 C 0.184 3.816 11 C -0.493 4.493 12 H 0.071 0.929 13 C 0.055 3.945 14 N -0.896 5.896 15 Si 0.888 3.112 16 H -0.271 1.271 17 H -0.286 1.286 18 H -0.286 1.286 19 C 0.097 3.903 20 C -0.146 4.146 21 C -0.120 4.120 22 C -0.115 4.115 23 C -0.154 4.154 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.095 0.905 28 H 0.097 0.903 29 H 0.084 0.916 30 H 0.048 0.952 31 H 0.045 0.955 32 H 0.049 0.951 33 H 0.046 0.954 34 H 0.092 0.908 35 H 0.055 0.945 36 H 0.045 0.955 37 H 0.012 0.988 38 H 0.021 0.979 39 H 0.259 0.741 40 H 0.058 0.942 41 H 0.135 0.865 42 H 0.045 0.955 43 H 0.047 0.953 44 H 0.057 0.943 45 H 0.046 0.954 46 H 0.073 0.927 47 H 0.045 0.955 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.369 -8.239 -8.467 13.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.214 4.214 3 C 0.239 3.761 4 O -0.332 6.332 5 C -0.101 4.101 6 C -0.183 4.183 7 C -0.185 4.185 8 C -0.057 4.057 9 N -0.247 5.247 10 C 0.059 3.941 11 C -0.531 4.531 12 H 0.089 0.911 13 C -0.146 4.146 14 N -0.536 5.536 15 Si 0.716 3.284 16 H -0.196 1.196 17 H -0.213 1.213 18 H -0.212 1.212 19 C -0.013 4.013 20 C -0.183 4.183 21 C -0.158 4.158 22 C -0.153 4.153 23 C -0.193 4.193 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.114 0.886 28 H 0.115 0.885 29 H 0.103 0.897 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.111 0.889 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.029 0.971 38 H 0.039 0.961 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.153 0.847 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.076 0.924 45 H 0.065 0.935 46 H 0.091 0.909 47 H 0.064 0.936 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.527 -8.083 -8.289 13.291 hybrid contribution 0.485 0.643 0.273 0.850 sum -6.042 -7.440 -8.016 12.495 Atomic orbital electron populations 1.21587 0.94296 1.01329 1.02853 1.22074 0.97687 0.97095 1.04546 1.24861 0.91391 0.90434 0.69446 1.90348 1.59208 1.47925 1.35714 1.21126 0.91823 0.98696 0.98445 1.21699 1.03145 0.98590 0.94857 1.21716 1.03919 0.98219 0.94672 1.21901 0.90554 0.92486 1.00738 1.62121 1.11239 1.48145 1.03208 1.20020 0.95993 0.92011 0.86081 1.21212 0.96126 1.23486 1.12305 0.91090 1.24982 0.97913 0.95445 0.96281 1.69964 1.36546 1.28065 1.18997 0.86594 0.85388 0.78146 0.78243 1.19585 1.21265 1.21215 1.22239 0.96200 0.90968 0.91863 1.23157 0.95741 0.94348 1.05075 1.22407 0.98442 0.96949 0.97968 1.22236 0.95482 0.96782 1.00821 1.22824 0.97868 0.97646 1.00947 0.92281 0.92409 0.92429 0.88631 0.88460 0.89730 0.93297 0.93630 0.93228 0.93533 0.88935 0.92690 0.93696 0.97050 0.96057 0.93119 0.92416 0.84720 0.93633 0.93392 0.92383 0.93511 0.90877 0.93644 0.91240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.20 37.16 0.34 -1.14 16 2 C -0.18 -1.87 5.68 -27.89 -0.16 -2.03 16 3 C 0.36 5.26 5.97 -29.03 -0.17 5.08 16 4 O -0.46 -8.07 15.59 6.00 0.09 -7.98 16 5 C -0.10 -1.50 0.70 -155.66 -0.11 -1.61 16 6 C -0.13 -1.67 7.86 37.16 0.29 -1.37 16 7 C -0.13 -1.95 8.12 37.16 0.30 -1.65 16 8 C 0.07 1.33 3.05 -3.82 -0.01 1.31 16 9 N -0.52 -10.35 2.83 -226.73 -0.64 -10.99 16 10 C 0.18 4.42 4.26 -4.98 -0.02 4.40 16 11 C -0.49 -12.63 7.08 -34.44 -0.24 -12.87 16 12 H 0.07 1.81 6.42 -52.48 -0.34 1.47 16 13 C 0.05 1.47 5.46 -17.82 -0.10 1.38 16 14 N -0.90 -25.58 13.29 55.43 0.74 -24.84 16 15 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 16 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 17 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 19 C 0.10 1.78 2.66 -66.59 -0.18 1.60 16 20 C -0.15 -2.73 6.26 -25.04 -0.16 -2.89 16 21 C -0.12 -2.03 6.91 -24.70 -0.17 -2.20 16 22 C -0.12 -2.07 6.67 -25.07 -0.17 -2.24 16 23 C -0.15 -2.82 5.11 -25.62 -0.13 -2.95 16 24 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 25 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.10 0.85 7.28 -51.93 -0.38 0.47 16 28 H 0.10 0.91 7.38 -51.93 -0.38 0.53 16 29 H 0.08 1.25 7.65 -51.93 -0.40 0.85 16 30 H 0.05 0.52 7.11 -51.93 -0.37 0.15 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.80 8.14 -51.94 -0.42 0.38 16 33 H 0.05 0.57 7.28 -51.93 -0.38 0.19 16 34 H 0.09 1.65 7.68 -51.93 -0.40 1.25 16 35 H 0.05 1.13 7.14 -51.93 -0.37 0.76 16 36 H 0.04 0.83 7.12 -51.93 -0.37 0.46 16 37 H 0.01 0.31 5.00 -51.93 -0.26 0.05 16 38 H 0.02 0.57 7.36 -51.93 -0.38 0.19 16 39 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 40 H 0.06 0.99 7.88 -51.93 -0.41 0.58 16 41 H 0.14 2.96 3.50 -51.93 -0.18 2.78 16 42 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.07 1.50 7.85 -51.93 -0.41 1.09 16 47 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.07 1.43 5.84 -51.93 -0.30 1.12 16 LS Contribution 359.71 15.07 5.42 5.42 Total: -1.00 -27.92 359.71 -8.78 -36.70 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -8.68 Total: 3.12 kcal Atomic # 6 Polarization: -16.49 SS G_CDS: -0.68 Total: -17.17 kcal Atomic # 7 Polarization: -35.93 SS G_CDS: 0.10 Total: -35.84 kcal Atomic # 8 Polarization: -8.07 SS G_CDS: 0.09 Total: -7.98 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -27.92 -8.78 -36.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208916564.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.635 kcal (2) G-P(sol) polarization free energy of solvation -27.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.29 seconds