Wall clock time and date at job start Tue Mar 31 2020 06:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46840 * 111.00049 * 2 1 4 4 C 1.53072 * 109.52072 * 174.27381 * 3 2 1 5 5 H 1.09004 * 110.01494 * 179.67458 * 4 3 2 6 6 C 1.53088 * 109.29697 * 300.06748 * 4 3 2 7 7 C 1.53003 * 109.42823 * 58.78513 * 6 4 3 8 8 C 1.53005 * 109.55970 * 59.72329 * 7 6 4 9 9 C 1.53089 * 109.46006 * 300.30032 * 8 7 6 10 10 H 1.09002 * 110.00599 * 180.76790 * 9 8 7 11 11 C 1.46852 * 110.99786 * 235.71807 * 2 1 3 12 12 C 1.53182 * 109.16647 * 60.45505 * 9 8 7 13 13 H 1.09004 * 109.65901 * 58.73582 * 12 9 8 14 14 O 1.42904 * 109.56174 * 179.01915 * 12 9 8 15 15 C 1.42904 * 114.00095 * 269.41664 * 14 12 9 16 16 C 1.52999 * 109.47066 * 179.97438 * 15 14 12 17 17 C 1.52997 * 109.47208 * 180.02562 * 16 15 14 18 18 C 1.52995 * 109.47509 * 180.02562 * 17 16 15 19 19 C 1.50700 * 109.47551 * 180.02562 * 18 17 16 20 20 H 1.07993 * 119.99902 * 0.02562 * 19 18 17 21 21 C 1.37880 * 119.99916 * 180.02562 * 19 18 17 22 22 N 1.31506 * 120.00263 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 119.99629 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47397 * 89.99962 * 23 21 19 25 25 H 1.48502 * 109.47478 * 210.00021 * 23 21 19 26 26 H 1.48500 * 109.47241 * 330.00033 * 23 21 19 27 27 H 1.09004 * 109.47405 * 184.28118 * 1 2 3 28 28 H 1.08994 * 109.47068 * 304.27672 * 1 2 3 29 29 H 1.08996 * 109.47408 * 64.27811 * 1 2 3 30 30 H 1.09000 * 109.45979 * 54.25989 * 3 2 1 31 31 H 1.09002 * 109.46243 * 294.29368 * 3 2 1 32 32 H 1.09002 * 109.48257 * 178.77527 * 6 4 3 33 33 H 1.08999 * 109.47721 * 298.79988 * 6 4 3 34 34 H 1.09002 * 109.45204 * 179.76788 * 7 6 4 35 35 H 1.09008 * 109.45066 * 299.70176 * 7 6 4 36 36 H 1.09002 * 109.46838 * 180.30200 * 8 7 6 37 37 H 1.09005 * 109.47300 * 60.29863 * 8 7 6 38 38 H 1.09004 * 109.46134 * 65.74258 * 11 2 1 39 39 H 1.09000 * 109.47314 * 305.75424 * 11 2 1 40 40 H 1.08993 * 109.47215 * 300.00793 * 15 14 12 41 41 H 1.08999 * 109.46495 * 60.00548 * 15 14 12 42 42 H 1.09000 * 109.47164 * 300.01081 * 16 15 14 43 43 H 1.09005 * 109.46615 * 60.00786 * 16 15 14 44 44 H 1.09004 * 109.47231 * 300.00376 * 17 16 15 45 45 H 1.09000 * 109.46990 * 59.99964 * 17 16 15 46 46 H 1.08997 * 109.47361 * 300.00925 * 18 17 16 47 47 H 1.09007 * 109.46801 * 59.99795 * 18 17 16 48 48 H 0.97002 * 120.00571 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5188 1.3339 0.1439 5 1 3.9187 2.3479 0.1391 6 6 3.8860 0.6432 1.4599 7 6 3.3106 -0.7745 1.4683 8 6 3.8850 -1.5674 0.2925 9 6 3.5187 -0.8703 -1.0203 10 1 3.9123 -1.4355 -1.8651 11 6 1.9952 -0.7722 -1.1328 12 6 4.1145 0.5409 -1.0235 13 1 5.1970 0.4822 -0.9103 14 8 3.7968 1.1916 -2.2555 15 6 4.7731 1.0019 -3.2817 16 6 4.3313 1.7378 -4.5482 17 6 5.3763 1.5342 -5.6471 18 6 4.9349 2.2707 -6.9134 19 6 5.9638 2.0696 -7.9960 20 1 6.8443 1.4756 -7.8005 21 6 5.7811 2.6441 -9.2360 22 7 4.7092 3.3678 -9.4740 23 14 7.0562 2.3942 -10.5780 24 1 6.7157 1.1816 -11.3648 25 1 7.0700 3.5781 -11.4744 26 1 8.3966 2.2243 -9.9619 27 1 -0.3634 -1.0248 0.0767 28 1 -0.3633 0.5787 0.8491 29 1 -0.3634 0.4460 -0.9258 30 1 1.5650 1.9250 0.8342 31 1 1.7307 1.8615 -0.9367 32 1 4.9708 0.5958 1.5552 33 1 3.4720 1.2084 2.2949 34 1 3.5754 -1.2682 2.4034 35 1 2.2254 -0.7264 1.3781 36 1 3.4701 -2.5754 0.2968 37 1 4.9698 -1.6206 0.3854 38 1 1.7312 -0.2742 -2.0658 39 1 1.5649 -1.7736 -1.1212 40 1 5.7326 1.3964 -2.9477 41 1 4.8725 -0.0622 -3.4962 42 1 3.3718 1.3429 -4.8820 43 1 4.2316 2.8019 -4.3339 44 1 6.3360 1.9290 -5.3135 45 1 5.4757 0.4701 -5.8612 46 1 3.9751 1.8765 -7.2472 47 1 4.8357 3.3348 -6.6989 48 1 4.5804 3.7717 -10.3465 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224695749.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:17 Heat of formation + Delta-G solvation = -63.766738 kcal Electronic energy + Delta-G solvation = -23026.225104 eV Core-core repulsion = 19887.051767 eV Total energy + Delta-G solvation = -3139.173337 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 3.89 seconds Orbital eigenvalues (eV) -40.94634 -37.37869 -35.12900 -34.45201 -32.69213 -32.33952 -30.36084 -28.48376 -26.69001 -26.26243 -24.74066 -23.05019 -22.03866 -21.60140 -21.13917 -20.06125 -18.52000 -16.75817 -16.21516 -16.13235 -15.69609 -15.25237 -15.00139 -14.55288 -14.36430 -14.20765 -13.57920 -13.42422 -13.30145 -12.86368 -12.68174 -12.47564 -12.38604 -12.17929 -11.73703 -11.64782 -11.39818 -11.35021 -11.12992 -10.98934 -10.94058 -10.77124 -10.63497 -10.54108 -10.39152 -10.23122 -10.14237 -9.65845 -9.29665 -9.21662 -9.03229 -8.33108 -7.99015 -5.98049 -4.00479 3.32691 3.38714 3.42156 3.64178 3.87062 4.46215 4.48026 4.52607 4.81522 4.90103 5.08354 5.16168 5.18388 5.20612 5.24569 5.30061 5.34689 5.37388 5.42100 5.50662 5.61705 5.65138 5.66646 5.67788 5.73881 5.76709 5.78722 5.81417 5.95193 5.96284 6.12361 6.13106 6.18901 6.25356 6.29949 6.49168 6.79442 6.80185 6.87484 6.91440 6.93250 7.12147 7.43779 7.70305 7.85341 8.02594 8.44981 9.06866 9.63369 11.13353 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.033336 B = 0.002809 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.742820 B = 9965.879403 C =10232.311402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.524 5.524 3 C 0.061 3.939 4 C -0.082 4.082 5 H 0.079 0.921 6 C -0.100 4.100 7 C -0.155 4.155 8 C -0.100 4.100 9 C -0.107 4.107 10 H 0.075 0.925 11 C 0.063 3.937 12 C 0.095 3.905 13 H 0.059 0.941 14 O -0.382 6.382 15 C 0.064 3.936 16 C -0.115 4.115 17 C -0.107 4.107 18 C 0.022 3.978 19 C -0.521 4.521 20 H 0.054 0.946 21 C 0.056 3.944 22 N -0.896 5.896 23 Si 0.892 3.108 24 H -0.281 1.281 25 H -0.286 1.286 26 H -0.274 1.274 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.028 0.972 30 H 0.072 0.928 31 H 0.047 0.953 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.040 0.960 35 H 0.137 0.863 36 H 0.058 0.942 37 H 0.050 0.950 38 H 0.047 0.953 39 H 0.071 0.929 40 H 0.044 0.956 41 H 0.043 0.957 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.048 0.952 45 H 0.047 0.953 46 H 0.016 0.984 47 H 0.016 0.984 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.940 -8.112 24.041 26.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.248 5.248 3 C -0.066 4.066 4 C -0.100 4.100 5 H 0.097 0.903 6 C -0.138 4.138 7 C -0.192 4.192 8 C -0.137 4.137 9 C -0.126 4.126 10 H 0.093 0.907 11 C -0.065 4.065 12 C 0.037 3.963 13 H 0.077 0.923 14 O -0.301 6.301 15 C -0.012 4.012 16 C -0.152 4.152 17 C -0.145 4.145 18 C -0.015 4.015 19 C -0.559 4.559 20 H 0.073 0.927 21 C -0.145 4.145 22 N -0.535 5.535 23 Si 0.720 3.280 24 H -0.207 1.207 25 H -0.212 1.212 26 H -0.199 1.199 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.046 0.954 30 H 0.090 0.910 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.058 0.942 35 H 0.154 0.846 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.090 0.910 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.066 0.934 45 H 0.066 0.934 46 H 0.034 0.966 47 H 0.034 0.966 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.044 -8.114 24.287 26.311 hybrid contribution 0.793 0.136 -1.640 1.827 sum -5.252 -7.978 22.648 24.579 Atomic orbital electron populations 1.22427 0.87899 1.02122 1.00729 1.62375 1.06934 1.13722 1.41784 1.22049 0.94556 0.88967 1.01054 1.21303 0.95227 0.99418 0.94088 0.90280 1.21407 0.99707 0.97097 0.95565 1.22420 1.07499 0.93556 0.95729 1.21379 0.99594 0.98526 0.94223 1.21696 0.95590 0.96717 0.98622 0.90708 1.22037 0.94551 0.97863 0.92054 1.22100 0.97969 0.91437 0.84770 0.92297 1.87913 1.47333 1.73683 1.21168 1.22704 0.90924 0.99226 0.88386 1.21619 1.00505 1.00306 0.92802 1.21573 0.96672 1.00494 0.95779 1.19085 0.96617 0.95381 0.90463 1.21274 1.06504 1.31421 0.96715 0.92729 1.25034 0.95596 0.95254 0.98649 1.69965 1.27051 1.33793 1.22714 0.86599 0.81945 0.77623 0.81862 1.20678 1.21217 1.19888 0.91419 0.91440 0.95383 0.90958 0.93456 0.93073 0.92050 0.94168 0.84580 0.92288 0.93170 0.93517 0.91013 0.93769 0.93851 0.91910 0.91813 0.93369 0.93392 0.96606 0.96566 0.93017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.59 60.07 0.58 0.71 16 2 N -0.52 -4.99 1.38 -242.91 -0.34 -5.33 16 3 C 0.06 0.63 4.74 -3.82 -0.02 0.61 16 4 C -0.08 -0.85 3.01 -90.44 -0.27 -1.12 16 5 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 6 C -0.10 -0.90 5.46 -26.68 -0.15 -1.05 16 7 C -0.15 -1.41 5.57 -26.73 -0.15 -1.55 16 8 C -0.10 -0.94 5.46 -26.68 -0.15 -1.08 16 9 C -0.11 -1.15 2.98 -90.44 -0.27 -1.42 16 10 H 0.07 0.84 7.91 -51.93 -0.41 0.43 16 11 C 0.06 0.66 4.74 -3.81 -0.02 0.64 16 12 C 0.10 1.13 2.19 -26.54 -0.06 1.07 16 13 H 0.06 0.69 7.79 -51.93 -0.40 0.29 16 14 O -0.38 -5.56 8.78 -35.23 -0.31 -5.87 16 15 C 0.06 0.96 5.76 37.16 0.21 1.18 16 16 C -0.11 -2.06 5.58 -26.73 -0.15 -2.21 16 17 C -0.11 -2.26 5.15 -26.74 -0.14 -2.40 16 18 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 19 C -0.52 -15.07 9.11 -34.44 -0.31 -15.38 16 20 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 21 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 22 N -0.90 -27.42 13.29 55.43 0.74 -26.68 16 23 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 29 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 31 H 0.05 0.58 7.73 -51.93 -0.40 0.18 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.14 1.31 4.75 -62.75 -0.30 1.01 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.05 0.59 7.73 -51.93 -0.40 0.19 16 39 H 0.07 0.68 8.12 -51.93 -0.42 0.26 16 40 H 0.04 0.64 8.09 -51.93 -0.42 0.22 16 41 H 0.04 0.62 7.91 -51.93 -0.41 0.21 16 42 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 45 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 360.33 15.07 5.43 5.43 Total: -1.00 -30.18 360.33 -10.09 -40.27 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -9.47 Total: -4.69 kcal Atomic # 6 Polarization: -18.92 SS G_CDS: -1.12 Total: -20.05 kcal Atomic # 7 Polarization: -32.41 SS G_CDS: 0.40 Total: -32.01 kcal Atomic # 8 Polarization: -5.56 SS G_CDS: -0.31 Total: -5.87 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.18 -10.09 -40.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224695749.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.493 kcal (2) G-P(sol) polarization free energy of solvation -30.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.89 seconds