Wall clock time and date at job start Tue Mar 31 2020 06:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42906 * 109.47324 * 2 1 4 4 C 1.42898 * 114.00329 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47328 * 210.00018 * 4 3 2 6 6 C 1.52999 * 109.47406 * 179.97438 * 5 4 3 7 7 C 1.53001 * 109.46672 * 59.99835 * 6 5 4 8 8 N 1.46906 * 109.46778 * 180.02562 * 7 6 5 9 9 C 1.46907 * 110.99901 * 204.99976 * 8 7 6 10 10 H 1.09004 * 109.41242 * 325.00508 * 9 8 7 11 11 C 1.52960 * 109.41198 * 84.85960 * 9 8 7 12 12 C 1.53237 * 109.39787 * 183.77162 * 11 9 8 13 13 C 1.51265 * 108.48412 * 305.26629 * 12 11 9 14 14 C 1.37882 * 120.85051 * 231.36078 * 13 12 11 15 15 N 1.31506 * 119.99775 * 164.56730 * 14 13 12 16 16 Si 1.86800 * 119.99777 * 344.57532 * 14 13 12 17 17 H 1.48493 * 109.47575 * 354.63166 * 16 14 13 18 18 H 1.48496 * 109.46946 * 114.63521 * 16 14 13 19 19 H 1.48497 * 109.46735 * 234.62831 * 16 14 13 20 20 C 1.51273 * 118.30112 * 51.39221 * 13 12 11 21 21 C 1.52958 * 109.41423 * 205.14183 * 9 8 7 22 22 C 1.52997 * 109.47340 * 300.00205 * 7 6 5 23 23 C 1.52999 * 109.47406 * 60.00244 * 22 7 6 24 24 H 1.09003 * 109.47220 * 60.00232 * 1 2 3 25 25 H 1.09000 * 109.47439 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47322 * 300.00233 * 1 2 3 27 27 H 1.09000 * 109.47815 * 239.99960 * 2 1 3 28 28 H 1.09003 * 109.47220 * 119.99768 * 2 1 3 29 29 H 1.08999 * 109.46731 * 329.99998 * 4 3 2 30 30 H 1.09001 * 109.47011 * 59.99592 * 5 4 3 31 31 H 1.09000 * 109.46845 * 300.00105 * 5 4 3 32 32 H 1.09001 * 109.46908 * 300.00605 * 6 5 4 33 33 H 1.08996 * 109.47124 * 179.97438 * 6 5 4 34 34 H 1.08999 * 109.47312 * 60.00548 * 7 6 5 35 35 H 1.00897 * 111.00051 * 81.04952 * 8 7 6 36 36 H 1.09004 * 109.48184 * 303.68909 * 11 9 8 37 37 H 1.09003 * 109.48086 * 63.72463 * 11 9 8 38 38 H 1.09002 * 109.61868 * 185.58550 * 12 11 9 39 39 H 1.09008 * 109.68446 * 64.98917 * 12 11 9 40 40 H 0.97003 * 120.00016 * 180.02562 * 15 14 13 41 41 H 1.08991 * 109.62730 * 188.93716 * 20 13 12 42 42 H 1.09002 * 109.78252 * 68.45739 * 20 13 12 43 43 H 1.08998 * 109.47961 * 296.28045 * 21 9 8 44 44 H 1.09000 * 109.48020 * 56.31465 * 21 9 8 45 45 H 1.09001 * 109.47011 * 180.02562 * 22 7 6 46 46 H 1.09002 * 109.47228 * 299.99639 * 22 7 6 47 47 H 1.08996 * 109.47124 * 180.02562 * 23 22 7 48 48 H 1.08999 * 109.46804 * 59.99928 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8403 2.7459 0.7218 6 6 5.3655 2.8664 0.7230 7 6 5.8750 2.9061 -0.7192 8 7 7.3396 3.0213 -0.7180 9 6 7.8199 3.6402 -1.9608 10 1 7.1868 3.3255 -2.7905 11 6 7.7618 5.1627 -1.8259 12 6 8.1732 5.8073 -3.1539 13 6 9.5308 5.2691 -3.5479 14 6 10.5603 6.1233 -3.8820 15 7 11.7967 5.6775 -3.9255 16 14 10.1987 7.9139 -4.2725 17 1 8.7299 8.1320 -4.2807 18 1 10.8221 8.7812 -3.2408 19 1 10.7568 8.2520 -5.6064 20 6 9.7300 3.7697 -3.5669 21 6 9.2605 3.1990 -2.2247 22 6 5.4655 1.6205 -1.4404 23 6 3.9403 1.4999 -1.4416 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8630 0.6017 0.5147 30 1 3.4776 2.7173 1.7493 31 1 3.4080 3.6043 0.2076 32 1 5.7974 2.0079 1.2373 33 1 5.6572 3.7826 1.2364 34 1 5.4432 3.7646 -1.2336 35 1 7.7728 2.1220 -0.5710 36 1 6.7457 5.4669 -1.5745 37 1 8.4432 5.4841 -1.0381 38 1 8.2290 6.8893 -3.0337 39 1 7.4431 5.5590 -3.9243 40 1 12.5211 6.2786 -4.1601 41 1 10.7860 3.5424 -3.7121 42 1 9.1464 3.3302 -4.3759 43 1 9.9055 3.5679 -1.4272 44 1 9.3074 2.1104 -2.2561 45 1 5.8289 1.6486 -2.4676 46 1 5.8975 0.7620 -0.9260 47 1 3.6487 0.5838 -1.9550 48 1 3.5085 2.3584 -1.9560 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256431283.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:12 Heat of formation + Delta-G solvation = -85.350187 kcal Electronic energy + Delta-G solvation = -22960.794935 eV Core-core repulsion = 19820.685669 eV Total energy + Delta-G solvation = -3140.109266 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -39.56969 -37.87039 -36.29921 -33.58598 -31.81190 -30.90150 -30.83787 -29.60555 -28.06406 -25.80700 -23.25565 -22.65811 -22.09039 -21.47251 -20.92832 -19.85177 -19.00483 -17.01281 -16.22745 -15.90603 -15.56731 -14.91403 -14.51055 -14.38417 -14.18677 -13.57778 -13.35179 -13.26509 -12.91557 -12.75189 -12.59158 -12.38608 -12.24708 -11.94823 -11.92693 -11.81537 -11.34352 -11.19347 -11.11980 -11.03811 -10.83787 -10.82209 -10.48531 -10.45919 -10.18906 -9.98782 -9.82987 -9.55046 -9.44940 -8.87136 -8.64403 -8.30269 -7.84674 -6.09087 -3.93063 3.29058 3.39328 3.42978 3.44646 4.43124 4.49761 4.59479 4.69319 4.79610 4.90948 5.07517 5.08046 5.13782 5.17285 5.19235 5.30355 5.43616 5.44388 5.49447 5.62229 5.69843 5.79520 5.83238 5.88314 5.92551 5.97878 6.03008 6.09391 6.15127 6.28466 6.35183 6.42800 6.63134 6.76720 6.87148 6.95705 7.03701 7.09702 7.11759 7.20888 7.52408 7.63425 7.73838 7.80108 7.88031 7.95175 8.44719 9.01573 9.59549 11.01031 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.035815 B = 0.003178 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.606553 B = 8807.302463 C = 8992.589363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.385 6.385 4 C 0.092 3.908 5 C -0.114 4.114 6 C -0.102 4.102 7 C 0.086 3.914 8 N -0.686 5.686 9 C 0.101 3.899 10 H 0.031 0.969 11 C -0.089 4.089 12 C -0.017 4.017 13 C -0.489 4.489 14 C 0.078 3.922 15 N -0.885 5.885 16 Si 0.879 3.121 17 H -0.262 1.262 18 H -0.283 1.283 19 H -0.287 1.287 20 C 0.011 3.989 21 C -0.107 4.107 22 C -0.146 4.146 23 C -0.135 4.135 24 H 0.062 0.938 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.332 0.668 36 H 0.027 0.973 37 H 0.056 0.944 38 H 0.031 0.969 39 H 0.010 0.990 40 H 0.263 0.737 41 H 0.055 0.945 42 H -0.001 1.001 43 H 0.058 0.942 44 H 0.024 0.976 45 H 0.066 0.934 46 H 0.061 0.939 47 H 0.058 0.942 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.110 -10.505 8.342 21.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.305 6.305 4 C 0.034 3.966 5 C -0.152 4.152 6 C -0.140 4.140 7 C -0.024 4.024 8 N -0.315 5.315 9 C -0.007 4.007 10 H 0.049 0.951 11 C -0.128 4.128 12 C -0.055 4.055 13 C -0.508 4.508 14 C -0.125 4.125 15 N -0.522 5.522 16 Si 0.707 3.293 17 H -0.186 1.186 18 H -0.210 1.210 19 H -0.213 1.213 20 C -0.027 4.027 21 C -0.145 4.145 22 C -0.185 4.185 23 C -0.173 4.173 24 H 0.081 0.919 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.150 0.850 36 H 0.046 0.954 37 H 0.075 0.925 38 H 0.050 0.950 39 H 0.028 0.972 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.017 0.983 43 H 0.077 0.923 44 H 0.042 0.958 45 H 0.085 0.915 46 H 0.079 0.921 47 H 0.077 0.923 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -17.010 -9.698 8.663 21.411 hybrid contribution -0.030 -0.104 -0.932 0.938 sum -17.041 -9.802 7.731 21.124 Atomic orbital electron populations 1.21741 0.93927 1.02071 1.03099 1.22469 0.95439 0.84259 0.99853 1.87916 1.21434 1.26016 1.95097 1.22156 0.80345 0.98486 0.95592 1.21588 0.96302 0.96916 1.00396 1.21465 0.92942 1.02713 0.96914 1.21616 0.89229 0.96366 0.95209 1.60727 1.04062 1.27970 1.38726 1.21443 0.95930 0.95585 0.87775 0.95122 1.21523 0.97929 0.93612 0.99725 1.19787 0.96666 0.96176 0.92842 1.19994 0.94191 0.91513 1.45094 1.24819 0.94461 0.98263 0.94952 1.69916 0.98857 1.36233 1.47193 0.86775 0.78984 0.85523 0.78050 1.18627 1.20956 1.21295 1.19360 0.98238 0.94586 0.90472 1.21777 0.94571 0.96255 1.01892 1.22252 0.95182 0.99370 1.01685 1.21953 0.96019 1.02384 0.96953 0.91872 0.91290 0.91912 0.93567 0.93609 0.92445 0.91469 0.91093 0.92161 0.90607 0.90370 0.84971 0.95408 0.92530 0.95005 0.97205 0.92751 0.92615 0.98264 0.92335 0.95775 0.91518 0.92071 0.92298 0.91060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 10.28 37.15 0.38 -0.71 16 2 C 0.06 0.49 6.47 37.15 0.24 0.73 16 3 O -0.39 -4.38 9.99 -35.23 -0.35 -4.73 16 4 C 0.09 0.98 2.61 -26.73 -0.07 0.91 16 5 C -0.11 -1.23 5.57 -26.73 -0.15 -1.38 16 6 C -0.10 -1.20 5.53 -26.73 -0.15 -1.34 16 7 C 0.09 1.17 2.27 -67.71 -0.15 1.02 16 8 N -0.69 -10.94 6.05 -99.77 -0.60 -11.55 16 9 C 0.10 1.95 2.21 -67.75 -0.15 1.80 16 10 H 0.03 0.61 7.11 -51.93 -0.37 0.24 16 11 C -0.09 -1.89 5.43 -26.63 -0.14 -2.03 16 12 C -0.02 -0.39 5.47 -27.48 -0.15 -0.55 16 13 C -0.49 -13.04 5.44 -98.92 -0.54 -13.57 16 14 C 0.08 2.15 5.43 -17.82 -0.10 2.06 16 15 N -0.88 -25.65 12.81 55.43 0.71 -24.94 16 16 Si 0.88 21.21 27.63 -169.99 -4.70 16.51 16 17 H -0.26 -6.11 6.14 56.52 0.35 -5.77 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 C 0.01 0.29 5.99 -27.49 -0.16 0.12 16 21 C -0.11 -2.28 5.24 -26.64 -0.14 -2.42 16 22 C -0.15 -1.77 5.15 -26.73 -0.14 -1.90 16 23 C -0.13 -1.50 5.54 -26.73 -0.15 -1.65 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.38 7.87 -51.93 -0.41 -0.03 16 28 H 0.05 0.36 8.08 -51.93 -0.42 -0.06 16 29 H 0.06 0.57 7.79 -51.93 -0.40 0.17 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.08 1.19 7.09 -51.93 -0.37 0.82 16 35 H 0.33 4.96 8.03 -39.29 -0.32 4.64 16 36 H 0.03 0.53 7.37 -51.93 -0.38 0.15 16 37 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.03 0.76 5.02 -51.93 -0.26 0.49 16 39 H 0.01 0.23 8.14 -51.92 -0.42 -0.20 16 40 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.06 1.53 7.11 -51.93 -0.37 1.16 16 42 H 0.00 -0.02 8.14 -51.93 -0.42 -0.45 16 43 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 44 H 0.02 0.46 8.05 -51.93 -0.42 0.04 16 45 H 0.07 0.90 7.42 -51.93 -0.39 0.51 16 46 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 47 H 0.06 0.61 7.87 -51.93 -0.41 0.21 16 48 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 358.41 15.07 5.40 5.40 Total: -1.00 -28.14 358.41 -10.30 -38.44 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -9.20 Total: -0.21 kcal Atomic # 6 Polarization: -17.35 SS G_CDS: -1.57 Total: -18.92 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: 0.11 Total: -36.49 kcal Atomic # 8 Polarization: -4.38 SS G_CDS: -0.35 Total: -4.73 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.70 Total: 16.51 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -28.14 -10.30 -38.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256431283.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.906 kcal (2) G-P(sol) polarization free energy of solvation -28.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds