Wall clock time and date at job start Tue Mar 31 2020 06:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42905 * 109.47122 * 2 1 4 4 C 1.42898 * 113.99744 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47013 * 150.00509 * 4 3 2 6 6 C 1.52992 * 109.47488 * 59.99486 * 5 4 3 7 7 C 1.53007 * 109.47007 * 60.00488 * 6 5 4 8 8 N 1.46900 * 109.47231 * 180.02562 * 7 6 5 9 9 C 1.46894 * 110.99843 * 229.99435 * 8 7 6 10 10 C 1.50694 * 110.01783 * 300.43441 * 9 8 7 11 11 H 1.08003 * 119.99919 * 123.65695 * 10 9 8 12 12 C 1.37881 * 120.00564 * 303.66509 * 10 9 8 13 13 N 1.31508 * 120.00115 * 186.10971 * 12 10 9 14 14 Si 1.86797 * 119.99568 * 6.11107 * 12 10 9 15 15 H 1.48499 * 109.47410 * 95.21330 * 14 12 10 16 16 H 1.48500 * 109.47123 * 215.21635 * 14 12 10 17 17 H 1.48501 * 109.47170 * 335.21385 * 14 12 10 18 18 C 1.54270 * 110.03142 * 178.99655 * 9 8 7 19 19 C 1.54886 * 104.19631 * 217.10438 * 18 9 8 20 20 C 1.54892 * 102.74654 * 37.94263 * 19 18 9 21 21 C 1.53871 * 110.03316 * 61.83075 * 9 8 7 22 22 C 1.53003 * 109.46598 * 300.00057 * 7 6 5 23 23 C 1.52992 * 109.47488 * 60.00238 * 22 7 6 24 24 H 1.09003 * 109.46624 * 60.00077 * 1 2 3 25 25 H 1.08994 * 109.46929 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47401 * 300.00148 * 1 2 3 27 27 H 1.08998 * 109.47401 * 239.99852 * 2 1 3 28 28 H 1.09002 * 109.47143 * 119.99892 * 2 1 3 29 29 H 1.08998 * 109.47605 * 30.00004 * 4 3 2 30 30 H 1.09002 * 109.46701 * 299.99822 * 5 4 3 31 31 H 1.08994 * 109.47419 * 180.02562 * 5 4 3 32 32 H 1.09003 * 109.47400 * 300.00994 * 6 5 4 33 33 H 1.08999 * 109.47166 * 180.02562 * 6 5 4 34 34 H 1.08998 * 109.47302 * 59.99852 * 7 6 5 35 35 H 1.00905 * 110.99654 * 353.95075 * 8 7 6 36 36 H 0.97003 * 119.99730 * 179.97438 * 13 12 10 37 37 H 1.09008 * 110.48604 * 335.78395 * 18 9 8 38 38 H 1.09002 * 110.48579 * 98.42346 * 18 9 8 39 39 H 1.08993 * 110.75936 * 279.62560 * 19 18 9 40 40 H 1.09007 * 110.75611 * 156.25162 * 19 18 9 41 41 H 1.09007 * 110.48446 * 203.37851 * 20 19 18 42 42 H 1.09000 * 110.49015 * 80.73774 * 20 19 18 43 43 H 1.09000 * 110.03211 * 238.56498 * 21 9 8 44 44 H 1.08996 * 110.03487 * 0.02562 * 21 9 8 45 45 H 1.09002 * 109.46701 * 179.97438 * 22 7 6 46 46 H 1.08994 * 109.47419 * 299.99496 * 22 7 6 47 47 H 1.08999 * 109.47166 * 179.97438 * 23 22 7 48 48 H 1.08998 * 109.47211 * 59.99715 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8410 2.7457 -0.7206 6 6 3.2336 3.9508 0.0002 7 6 3.7415 3.9913 1.4429 8 7 3.1579 5.1481 2.1352 9 6 4.1964 5.9335 2.8152 10 6 4.9137 5.0755 3.8251 11 1 5.9863 4.9605 3.7714 12 6 4.2009 4.4369 4.8177 13 7 4.8355 3.7871 5.7688 14 14 2.3339 4.4949 4.8115 15 1 1.8030 3.2787 4.1448 16 1 1.8357 4.5505 6.2093 17 1 1.8785 5.7015 4.0754 18 6 3.5631 7.1550 3.5129 19 6 4.6078 8.2832 3.3259 20 6 5.1388 8.0233 1.8943 21 6 5.1982 6.4856 1.7861 22 6 3.3314 2.7057 2.1641 23 6 3.9387 1.5006 1.4434 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8636 0.6015 -0.5129 30 1 3.4792 2.7168 -1.7484 31 1 4.9275 2.8315 -0.7206 32 1 2.1470 3.8647 -0.0002 33 1 3.5254 4.8666 -0.5139 34 1 4.8280 4.0773 1.4434 35 1 2.6297 5.7232 1.4961 36 1 4.3340 3.3382 6.4673 37 1 2.6219 7.4232 3.0327 38 1 3.4074 6.9510 4.5723 39 1 5.4101 8.1919 4.0580 40 1 4.1341 9.2628 3.3903 41 1 6.1331 8.4531 1.7724 42 1 4.4522 8.4317 1.1527 43 1 6.2035 6.1336 2.0176 44 1 4.9136 6.1712 0.7820 45 1 3.6935 2.7344 3.1918 46 1 2.2448 2.6197 2.1637 47 1 3.6469 0.5848 1.9574 48 1 5.0253 1.5866 1.4438 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256436034.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:49 Heat of formation + Delta-G solvation = -60.863551 kcal Electronic energy + Delta-G solvation = -24567.251661 eV Core-core repulsion = 21428.204215 eV Total energy + Delta-G solvation = -3139.047446 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -39.33914 -38.05468 -35.87264 -32.90494 -32.02454 -30.70389 -30.25298 -28.46821 -27.77302 -25.99343 -23.60791 -22.86620 -22.04756 -21.28246 -20.15682 -18.99373 -18.48008 -16.23929 -16.10234 -15.72858 -15.44121 -15.00527 -14.68988 -14.25955 -13.70362 -13.58568 -13.22929 -12.85495 -12.77302 -12.61597 -12.13816 -12.09200 -11.96537 -11.78384 -11.67760 -11.53976 -11.06419 -10.89648 -10.75185 -10.60669 -10.53201 -10.33100 -10.17233 -10.05323 -9.79390 -9.70343 -9.55936 -9.40800 -9.27574 -8.94636 -8.88284 -8.32641 -7.07032 -5.90925 -3.97214 3.68837 3.74665 3.86381 3.95578 4.78767 4.94561 5.04478 5.07320 5.19035 5.25339 5.33069 5.39314 5.43506 5.57593 5.60660 5.69056 5.69677 5.75045 5.81970 5.91103 5.96582 6.05003 6.06680 6.12707 6.17112 6.26804 6.30235 6.33877 6.44832 6.52346 6.56376 6.58463 6.65608 6.69016 6.77046 6.84628 6.91081 7.01102 7.13315 7.26582 7.29455 7.44151 7.50430 7.84617 8.17410 8.54008 8.78362 9.08783 9.75523 11.17623 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.018330 B = 0.006578 C = 0.005648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.224546 B = 4255.628173 C = 4956.316048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.057 3.943 3 O -0.374 6.374 4 C 0.092 3.908 5 C -0.108 4.108 6 C -0.128 4.128 7 C 0.109 3.891 8 N -0.677 5.677 9 C 0.209 3.791 10 C -0.501 4.501 11 H 0.067 0.933 12 C 0.081 3.919 13 N -0.904 5.904 14 Si 0.920 3.080 15 H -0.282 1.282 16 H -0.335 1.335 17 H -0.247 1.247 18 C -0.106 4.106 19 C -0.119 4.119 20 C -0.120 4.120 21 C -0.137 4.137 22 C -0.103 4.103 23 C -0.139 4.139 24 H 0.060 0.940 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.041 0.959 28 H 0.045 0.955 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.051 0.949 34 H 0.063 0.937 35 H 0.313 0.687 36 H 0.259 0.741 37 H 0.042 0.958 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.047 0.953 41 H 0.049 0.951 42 H 0.049 0.951 43 H 0.060 0.940 44 H 0.043 0.957 45 H 0.084 0.916 46 H 0.057 0.943 47 H 0.054 0.946 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.244 -2.669 -12.669 13.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.020 4.020 3 O -0.294 6.294 4 C 0.035 3.965 5 C -0.146 4.146 6 C -0.166 4.166 7 C -0.001 4.001 8 N -0.307 5.307 9 C 0.120 3.880 10 C -0.538 4.538 11 H 0.085 0.915 12 C -0.122 4.122 13 N -0.541 5.541 14 Si 0.753 3.247 15 H -0.208 1.208 16 H -0.267 1.267 17 H -0.172 1.172 18 C -0.144 4.144 19 C -0.156 4.156 20 C -0.158 4.158 21 C -0.176 4.176 22 C -0.141 4.141 23 C -0.177 4.177 24 H 0.079 0.921 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.131 0.869 36 H 0.069 0.931 37 H 0.060 0.940 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.079 0.921 44 H 0.061 0.939 45 H 0.102 0.898 46 H 0.076 0.924 47 H 0.073 0.927 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.538 -2.966 -11.971 13.141 hybrid contribution -0.279 -0.040 -0.623 0.684 sum -4.817 -3.006 -12.594 13.815 Atomic orbital electron populations 1.21721 0.94172 1.01742 1.03083 1.22423 0.95325 0.84776 0.99483 1.87955 1.21194 1.25210 1.95022 1.22106 0.80968 0.97258 0.96183 1.21544 1.00413 0.94238 0.98390 1.21948 1.01444 0.96438 0.96788 1.21178 0.98279 0.91478 0.89156 1.60940 1.27130 1.10708 1.31928 1.19697 0.86655 0.90573 0.91061 1.20758 0.94157 1.29179 1.09755 0.91523 1.25016 0.99609 0.93646 0.93895 1.70000 1.36382 1.34706 1.13057 0.86458 0.84954 0.80599 0.72690 1.20848 1.26695 1.17158 1.22693 0.95765 0.95034 1.00920 1.22418 0.99287 0.97388 0.96553 1.22285 0.99298 0.97169 0.97082 1.22879 1.01884 0.94272 0.98607 1.21673 1.00018 0.91873 1.00535 1.22029 1.00779 0.99745 0.95152 0.92128 0.91579 0.91751 0.94077 0.93642 0.93191 0.92204 0.90977 0.91244 0.93029 0.91862 0.86897 0.93137 0.93979 0.91795 0.91445 0.93442 0.93197 0.93179 0.92099 0.93859 0.89771 0.92432 0.92741 0.91317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 10.28 37.16 0.38 -1.26 16 2 C 0.06 0.71 6.47 37.16 0.24 0.95 16 3 O -0.37 -5.78 8.64 -35.23 -0.30 -6.09 16 4 C 0.09 1.36 2.92 -26.73 -0.08 1.28 16 5 C -0.11 -1.51 5.66 -26.73 -0.15 -1.66 16 6 C -0.13 -2.04 4.87 -26.73 -0.13 -2.17 16 7 C 0.11 2.10 1.27 -67.71 -0.09 2.02 16 8 N -0.68 -14.04 2.92 -93.08 -0.27 -14.31 16 9 C 0.21 4.59 0.35 -131.64 -0.05 4.54 16 10 C -0.50 -13.34 7.25 -34.44 -0.25 -13.59 16 11 H 0.07 1.98 7.57 -52.48 -0.40 1.58 16 12 C 0.08 2.28 4.01 -17.82 -0.07 2.21 16 13 N -0.90 -27.41 13.96 55.43 0.77 -26.63 16 14 Si 0.92 23.56 22.18 -169.99 -3.77 19.79 16 15 H -0.28 -7.23 5.79 56.52 0.33 -6.91 16 16 H -0.34 -9.07 7.11 56.52 0.40 -8.66 16 17 H -0.25 -5.97 4.82 56.52 0.27 -5.70 16 18 C -0.11 -2.24 4.14 -25.07 -0.10 -2.34 16 19 C -0.12 -2.18 6.91 -24.74 -0.17 -2.35 16 20 C -0.12 -2.06 6.83 -25.07 -0.17 -2.23 16 21 C -0.14 -2.65 5.17 -25.62 -0.13 -2.79 16 22 C -0.10 -2.14 3.71 -26.73 -0.10 -2.24 16 23 C -0.14 -2.38 5.63 -26.73 -0.15 -2.53 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.04 0.44 8.09 -51.93 -0.42 0.02 16 28 H 0.05 0.57 7.87 -51.93 -0.41 0.16 16 29 H 0.05 0.64 7.79 -51.93 -0.40 0.23 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.07 1.17 7.68 -51.93 -0.40 0.77 16 33 H 0.05 0.77 7.78 -51.93 -0.40 0.36 16 34 H 0.06 1.33 6.31 -51.93 -0.33 1.01 16 35 H 0.31 5.93 7.95 -39.29 -0.31 5.62 16 36 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 37 H 0.04 0.84 7.69 -51.92 -0.40 0.44 16 38 H 0.06 1.50 5.83 -51.93 -0.30 1.20 16 39 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.05 0.76 8.14 -51.92 -0.42 0.34 16 41 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.06 1.27 7.37 -51.93 -0.38 0.88 16 44 H 0.04 0.78 6.83 -51.93 -0.35 0.42 16 45 H 0.08 2.08 4.79 -51.93 -0.25 1.83 16 46 H 0.06 1.26 7.08 -51.93 -0.37 0.89 16 47 H 0.05 0.91 7.87 -51.93 -0.41 0.50 16 48 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 339.08 15.07 5.11 5.11 Total: -1.00 -29.55 339.08 -8.58 -38.13 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -9.10 Total: 6.16 kcal Atomic # 6 Polarization: -21.14 SS G_CDS: -1.02 Total: -22.16 kcal Atomic # 7 Polarization: -41.44 SS G_CDS: 0.50 Total: -40.94 kcal Atomic # 8 Polarization: -5.78 SS G_CDS: -0.30 Total: -6.09 kcal Atomic # 14 Polarization: 23.56 SS G_CDS: -3.77 Total: 19.79 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.55 -8.58 -38.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256436034.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.732 kcal (2) G-P(sol) polarization free energy of solvation -29.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds