Wall clock time and date at job start Tue Mar 31 2020 06:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.46889 * 2 1 4 4 C 1.42905 * 113.99778 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47307 * 269.99994 * 4 3 2 6 6 C 1.53004 * 109.47352 * 300.00121 * 5 4 3 7 7 C 1.52997 * 109.46862 * 300.00179 * 6 5 4 8 8 N 1.46898 * 109.46815 * 179.97438 * 7 6 5 9 9 C 1.46849 * 111.00262 * 295.78639 * 8 7 6 10 10 C 1.53030 * 109.52696 * 185.83933 * 9 8 7 11 11 C 1.53123 * 109.28181 * 300.82223 * 10 9 8 12 12 C 1.53123 * 109.15867 * 57.64969 * 11 10 9 13 13 H 1.09000 * 109.53191 * 62.30933 * 12 11 10 14 14 C 1.50697 * 109.50093 * 182.40539 * 12 11 10 15 15 H 1.08002 * 119.99755 * 119.80771 * 14 12 11 16 16 C 1.37875 * 120.00604 * 299.80377 * 14 12 11 17 17 N 1.31521 * 119.99584 * 0.02562 * 16 14 12 18 18 Si 1.86797 * 120.00373 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.46986 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.46752 * 120.00031 * 18 16 14 21 21 H 1.48495 * 109.47288 * 240.00260 * 18 16 14 22 22 C 1.46847 * 111.00317 * 59.99988 * 8 7 6 23 23 C 1.52998 * 109.47604 * 59.99983 * 7 6 5 24 24 C 1.53004 * 109.47024 * 299.99918 * 23 7 6 25 25 H 1.09001 * 109.47296 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47286 * 300.00017 * 1 2 3 27 27 H 1.09008 * 109.47201 * 60.00236 * 1 2 3 28 28 H 1.08997 * 109.47286 * 239.99983 * 2 1 3 29 29 H 1.08997 * 109.46848 * 120.00081 * 2 1 3 30 30 H 1.09001 * 109.46882 * 30.00382 * 4 3 2 31 31 H 1.08997 * 109.46785 * 60.00007 * 5 4 3 32 32 H 1.09002 * 109.47171 * 179.97438 * 5 4 3 33 33 H 1.08998 * 109.47016 * 179.97438 * 6 5 4 34 34 H 1.09002 * 109.46635 * 60.00091 * 6 5 4 35 35 H 1.09002 * 109.46971 * 299.99713 * 7 6 5 36 36 H 1.08997 * 109.46048 * 305.86130 * 9 8 7 37 37 H 1.08998 * 109.45958 * 65.82293 * 9 8 7 38 38 H 1.09001 * 109.50861 * 180.88163 * 10 9 8 39 39 H 1.09000 * 109.53664 * 60.78001 * 10 9 8 40 40 H 1.09001 * 109.52188 * 297.75251 * 11 10 9 41 41 H 1.08999 * 109.57494 * 177.58920 * 11 10 9 42 42 H 0.96996 * 119.99671 * 179.97438 * 17 16 14 43 43 H 1.09013 * 109.45953 * 294.17638 * 22 8 7 44 44 H 1.08993 * 109.46435 * 54.14763 * 22 8 7 45 45 H 1.08994 * 109.47354 * 179.97438 * 23 7 6 46 46 H 1.09002 * 109.47182 * 59.99298 * 23 7 6 47 47 H 1.09002 * 109.47092 * 299.99989 * 24 23 7 48 48 H 1.09001 * 109.47233 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.9387 1.5006 1.4433 6 6 3.3314 2.7058 2.1642 7 6 3.7414 3.9913 1.4429 8 7 3.1578 5.1483 2.1347 9 6 1.6912 5.1174 2.0666 10 6 1.1240 6.4056 2.6673 11 6 1.5835 6.5300 4.1226 12 6 3.1139 6.5110 4.1698 13 1 3.5060 7.3693 3.6240 14 6 3.5739 6.5736 5.6035 15 1 4.1702 5.7725 6.0147 16 6 3.2336 7.6535 6.3902 17 7 2.5071 8.6288 5.8896 18 14 3.8032 7.7306 8.1676 19 1 4.6001 6.5185 8.4850 20 1 4.6418 8.9399 8.3665 21 1 2.6210 7.7950 9.0639 22 6 3.6234 5.2198 3.5255 23 6 3.2335 3.9509 0.0002 24 6 3.8409 2.7457 -0.7207 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8901 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8635 0.6015 -0.5130 31 1 3.6465 0.5848 1.9571 32 1 5.0253 1.5862 1.4437 33 1 3.6928 2.7343 3.1921 34 1 2.2448 2.6196 2.1637 35 1 4.8280 4.0773 1.4433 36 1 1.3776 5.0330 1.0261 37 1 1.3195 4.2605 2.6284 38 1 0.0350 6.3756 2.6309 39 1 1.4837 7.2625 2.0977 40 1 1.1910 5.6938 4.7013 41 1 1.2177 7.4671 4.5423 42 1 2.2674 9.3884 6.4432 43 1 3.2426 4.3623 4.0805 44 1 4.7131 5.2099 3.5446 45 1 3.5252 4.8668 -0.5135 46 1 2.1469 3.8647 -0.0002 47 1 4.9275 2.8318 -0.7203 48 1 3.4787 2.7166 -1.7484 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256442589.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:40 Heat of formation + Delta-G solvation = -69.143326 kcal Electronic energy + Delta-G solvation = -23785.480889 eV Core-core repulsion = 20646.074405 eV Total energy + Delta-G solvation = -3139.406484 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.85010 -38.06307 -35.76874 -33.29714 -31.78120 -30.83556 -30.66798 -29.72159 -27.70065 -24.91609 -23.43074 -23.11465 -22.51123 -21.40838 -20.89153 -19.32494 -18.13709 -16.51365 -16.31723 -15.97416 -15.61156 -15.08794 -14.49980 -14.11111 -13.86598 -13.67407 -13.54290 -13.17423 -12.89897 -12.76698 -12.52435 -12.25389 -12.10706 -11.91807 -11.78836 -11.66145 -11.51548 -11.18970 -11.05388 -10.87350 -10.74492 -10.65385 -10.44593 -10.23950 -9.99754 -9.90779 -9.70480 -9.42516 -9.36916 -8.88849 -8.60806 -8.23912 -7.43305 -5.91814 -3.97601 3.32977 3.40876 3.44606 3.59624 4.43824 4.58946 4.76058 4.80765 4.90185 4.94175 5.10564 5.18131 5.23866 5.33845 5.38161 5.44540 5.55702 5.59329 5.62013 5.74006 5.74613 5.89507 5.90925 5.94603 6.00245 6.03845 6.05908 6.19468 6.30854 6.37006 6.40521 6.50862 6.57934 6.63930 6.70325 6.86567 6.88225 7.08593 7.20478 7.32330 7.51093 7.80574 7.84500 7.98512 8.17437 8.25582 8.55969 9.06992 9.66336 11.14165 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.026242 B = 0.003930 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.732991 B = 7122.841484 C = 7204.885442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.374 6.374 4 C 0.091 3.909 5 C -0.135 4.135 6 C -0.147 4.147 7 C 0.087 3.913 8 N -0.531 5.531 9 C 0.060 3.940 10 C -0.118 4.118 11 C -0.109 4.109 12 C 0.054 3.946 13 H 0.033 0.967 14 C -0.512 4.512 15 H 0.053 0.947 16 C 0.062 3.938 17 N -0.888 5.888 18 Si 0.889 3.111 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.285 1.285 22 C 0.068 3.932 23 C -0.109 4.109 24 C -0.112 4.112 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.043 0.957 29 H 0.044 0.956 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.024 0.976 38 H 0.043 0.957 39 H 0.059 0.941 40 H 0.028 0.972 41 H 0.089 0.911 42 H 0.258 0.742 43 H 0.021 0.979 44 H 0.055 0.945 45 H 0.066 0.934 46 H 0.073 0.927 47 H 0.073 0.927 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.690 -15.498 -13.276 20.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.294 6.294 4 C 0.033 3.967 5 C -0.173 4.173 6 C -0.186 4.186 7 C -0.022 4.022 8 N -0.254 5.254 9 C -0.068 4.068 10 C -0.156 4.156 11 C -0.147 4.147 12 C 0.035 3.965 13 H 0.051 0.949 14 C -0.551 4.551 15 H 0.071 0.929 16 C -0.139 4.139 17 N -0.527 5.527 18 Si 0.717 3.283 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.059 4.059 23 C -0.147 4.147 24 C -0.150 4.150 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.042 0.958 38 H 0.062 0.938 39 H 0.077 0.923 40 H 0.047 0.953 41 H 0.107 0.893 42 H 0.068 0.932 43 H 0.039 0.961 44 H 0.074 0.926 45 H 0.085 0.915 46 H 0.091 0.909 47 H 0.091 0.909 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.733 -14.720 -13.455 19.957 hybrid contribution 0.188 -1.015 1.535 1.850 sum -0.544 -15.735 -11.920 19.748 Atomic orbital electron populations 1.21732 0.93928 1.01931 1.03239 1.22448 0.95519 0.84498 0.99522 1.87973 1.20918 1.25483 1.94985 1.22096 0.81256 0.97804 0.95516 1.21956 1.00506 0.98934 0.95934 1.22120 1.01815 0.95120 0.99531 1.21677 0.98908 0.88259 0.93326 1.62240 1.07570 1.38538 1.17082 1.22071 0.87977 0.97452 0.99252 1.21683 0.97734 0.96710 0.99458 1.21631 0.99124 1.02206 0.91770 1.18667 0.91830 0.91640 0.94335 0.94884 1.21204 1.32549 1.05101 0.96246 0.92904 1.24935 0.95169 0.95643 0.98138 1.69913 1.37704 1.09209 1.35908 0.86594 0.78438 0.77883 0.85407 1.19907 1.21082 1.21143 1.22284 0.98536 0.99739 0.85374 1.21548 1.01397 0.96928 0.94795 1.21619 1.00526 0.93934 0.98956 0.91446 0.91745 0.91932 0.93870 0.93742 0.92791 0.92467 0.91279 0.91841 0.91180 0.90920 0.91995 0.95814 0.93803 0.92268 0.95347 0.89302 0.93198 0.96102 0.92650 0.91484 0.90892 0.90852 0.91581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 10.28 37.16 0.38 -0.93 16 2 C 0.06 0.55 6.47 37.16 0.24 0.79 16 3 O -0.37 -4.56 8.64 -35.23 -0.30 -4.86 16 4 C 0.09 0.99 2.92 -26.73 -0.08 0.91 16 5 C -0.13 -1.58 5.63 -26.73 -0.15 -1.73 16 6 C -0.15 -2.16 4.37 -26.73 -0.12 -2.28 16 7 C 0.09 1.35 2.30 -67.72 -0.16 1.20 16 8 N -0.53 -10.10 4.68 -226.70 -1.06 -11.16 16 9 C 0.06 1.12 4.67 -3.84 -0.02 1.10 16 10 C -0.12 -2.41 6.09 -26.65 -0.16 -2.58 16 11 C -0.11 -2.67 5.03 -26.60 -0.13 -2.80 16 12 C 0.05 1.39 2.26 -91.69 -0.21 1.18 16 13 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 14 C -0.51 -14.31 8.56 -34.44 -0.29 -14.60 16 15 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 16 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 17 N -0.89 -25.77 11.36 55.43 0.63 -25.14 16 18 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 19 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 20 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 C 0.07 1.47 4.11 -3.84 -0.02 1.46 16 23 C -0.11 -1.47 4.70 -26.73 -0.13 -1.60 16 24 C -0.11 -1.22 5.66 -26.73 -0.15 -1.38 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 28 H 0.04 0.36 8.09 -51.93 -0.42 -0.06 16 29 H 0.04 0.41 7.87 -51.93 -0.41 0.00 16 30 H 0.05 0.50 7.79 -51.93 -0.40 0.09 16 31 H 0.06 0.64 7.87 -51.93 -0.41 0.23 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.06 1.02 6.54 -51.93 -0.34 0.68 16 34 H 0.07 1.13 6.17 -51.93 -0.32 0.81 16 35 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.06 1.05 5.90 -51.93 -0.31 0.74 16 37 H 0.02 0.45 6.71 -51.93 -0.35 0.10 16 38 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.09 2.42 6.16 -51.93 -0.32 2.10 16 42 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 43 H 0.02 0.46 6.63 -51.92 -0.34 0.12 16 44 H 0.05 1.20 8.12 -51.93 -0.42 0.78 16 45 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.07 1.07 5.75 -51.93 -0.30 0.77 16 47 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 48 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 351.25 15.07 5.29 5.29 Total: -1.00 -28.90 351.25 -10.50 -39.41 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -8.96 Total: -0.47 kcal Atomic # 6 Polarization: -18.52 SS G_CDS: -1.08 Total: -19.60 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: -0.43 Total: -36.30 kcal Atomic # 8 Polarization: -4.56 SS G_CDS: -0.30 Total: -4.86 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -28.90 -10.50 -39.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256442589.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.738 kcal (2) G-P(sol) polarization free energy of solvation -28.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds