Wall clock time and date at job start Tue Mar 31 2020 06:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42891 * 109.47089 * 2 1 4 4 C 1.42905 * 114.00085 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47264 * 209.99992 * 4 3 2 6 6 C 1.53000 * 109.47060 * 300.00236 * 5 4 3 7 7 C 1.53002 * 109.47233 * 299.99657 * 6 5 4 8 8 N 1.46899 * 109.47394 * 180.02562 * 7 6 5 9 9 C 1.46850 * 110.99815 * 56.04769 * 8 7 6 10 10 C 1.53034 * 109.52041 * 174.16155 * 9 8 7 11 11 C 1.53128 * 109.28098 * 59.17918 * 10 9 8 12 12 C 1.53117 * 109.15636 * 302.34656 * 11 10 9 13 13 H 1.08999 * 109.50506 * 297.70764 * 12 11 10 14 14 C 1.50700 * 109.50122 * 177.63355 * 12 11 10 15 15 H 1.08004 * 120.00173 * 240.00116 * 14 12 11 16 16 C 1.37880 * 120.00056 * 59.99793 * 14 12 11 17 17 N 1.31515 * 119.99852 * 359.97438 * 16 14 12 18 18 Si 1.86799 * 120.00001 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47421 * 89.99754 * 18 16 14 20 20 H 1.48502 * 109.46916 * 210.00035 * 18 16 14 21 21 H 1.48502 * 109.46937 * 329.99839 * 18 16 14 22 22 C 1.46848 * 110.99845 * 291.83931 * 8 7 6 23 23 C 1.52997 * 109.46817 * 60.00194 * 7 6 5 24 24 C 1.52999 * 109.46728 * 89.99907 * 4 3 2 25 25 H 1.09007 * 109.47297 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47249 * 299.99369 * 1 2 3 27 27 H 1.08998 * 109.47412 * 60.00231 * 1 2 3 28 28 H 1.09008 * 109.46698 * 240.00113 * 2 1 3 29 29 H 1.08991 * 109.47005 * 120.00559 * 2 1 3 30 30 H 1.08996 * 109.46641 * 330.00679 * 4 3 2 31 31 H 1.09002 * 109.47153 * 179.97438 * 5 4 3 32 32 H 1.09001 * 109.46832 * 60.00108 * 5 4 3 33 33 H 1.08992 * 109.47399 * 59.99823 * 6 5 4 34 34 H 1.09004 * 109.46724 * 180.02562 * 6 5 4 35 35 H 1.09002 * 109.47075 * 300.00932 * 7 6 5 36 36 H 1.09006 * 109.45920 * 294.17621 * 9 8 7 37 37 H 1.08992 * 109.46552 * 54.14422 * 9 8 7 38 38 H 1.08996 * 109.50295 * 179.11559 * 10 9 8 39 39 H 1.08998 * 109.50668 * 299.20274 * 10 9 8 40 40 H 1.08999 * 109.52281 * 62.24380 * 11 10 9 41 41 H 1.08995 * 109.52528 * 182.44216 * 11 10 9 42 42 H 0.97001 * 119.99433 * 180.02562 * 17 16 14 43 43 H 1.09006 * 109.46210 * 305.85673 * 22 8 7 44 44 H 1.09002 * 109.46509 * 65.82057 * 22 8 7 45 45 H 1.09002 * 109.47153 * 60.00231 * 23 7 6 46 46 H 1.09001 * 109.47289 * 180.02562 * 23 7 6 47 47 H 1.09000 * 109.47486 * 300.00062 * 24 4 3 48 48 H 1.09002 * 109.46716 * 180.02562 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8410 2.7455 0.7207 6 6 3.2335 3.9507 -0.0001 7 6 3.7413 3.9913 -1.4429 8 7 3.1586 5.1487 -2.1348 9 6 3.4541 6.3949 -1.4162 10 6 2.9599 7.5880 -2.2372 11 6 1.4518 7.4543 -2.4663 12 6 1.1667 6.1261 -3.1727 13 1 1.6523 6.1213 -4.1486 14 6 -0.3205 5.9596 -3.3501 15 1 -0.8263 5.1155 -2.9051 16 6 -1.0355 6.8850 -4.0805 17 7 -0.4197 7.9133 -4.6219 18 14 -2.8791 6.6791 -4.2998 19 1 -3.5895 7.3713 -3.1946 20 1 -3.2919 7.2680 -5.5991 21 1 -3.2216 5.2343 -4.2801 22 6 1.7128 4.9752 -2.3246 23 6 3.3313 2.7058 -2.1641 24 6 3.9386 1.5005 -1.4433 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 3.8635 0.6014 0.5128 31 1 4.9276 2.8314 0.7206 32 1 3.4792 2.7166 1.7485 33 1 2.1470 3.8646 0.0003 34 1 3.5261 4.8665 0.5135 35 1 4.8279 4.0772 -1.4433 36 1 2.9499 6.3851 -0.4498 37 1 4.5299 6.4797 -1.2635 38 1 3.1652 8.5119 -1.6965 39 1 3.4742 7.6067 -3.1980 40 1 0.9344 7.4750 -1.5072 41 1 1.1031 8.2793 -3.0873 42 1 -0.9228 8.5645 -5.1355 43 1 1.5241 4.0289 -2.8317 44 1 1.2168 4.9721 -1.3540 45 1 2.2446 2.6197 -2.1637 46 1 3.6934 2.7344 -3.1918 47 1 3.6464 0.5847 -1.9572 48 1 5.0252 1.5862 -1.4438 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256442590.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:44 Heat of formation + Delta-G solvation = -67.964688 kcal Electronic energy + Delta-G solvation = -23990.657964 eV Core-core repulsion = 20851.302590 eV Total energy + Delta-G solvation = -3139.355374 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -39.81211 -38.02708 -35.70558 -33.28283 -31.80056 -30.78921 -30.57699 -29.67192 -27.64015 -24.91483 -23.47069 -23.05863 -22.52249 -21.22545 -20.77277 -19.45653 -18.07281 -16.47343 -16.25208 -15.89409 -15.62441 -15.01135 -14.36230 -14.10132 -13.92178 -13.62395 -13.53723 -13.04262 -12.82940 -12.75036 -12.49855 -12.23993 -12.06610 -11.93575 -11.78158 -11.60391 -11.33797 -11.16562 -10.99225 -10.84034 -10.75169 -10.57866 -10.44115 -10.16058 -10.01824 -9.89248 -9.69925 -9.36655 -9.32336 -8.87205 -8.57642 -8.22150 -7.42602 -5.89741 -3.95148 3.35360 3.41856 3.45347 3.68666 4.45691 4.59729 4.77291 4.88161 4.99622 5.02972 5.18669 5.27861 5.30077 5.36972 5.40126 5.52870 5.59702 5.62828 5.65241 5.73789 5.86890 5.88304 5.94929 5.97723 6.02892 6.08236 6.13111 6.19055 6.28063 6.40559 6.46400 6.51058 6.63747 6.68813 6.72948 6.84740 6.91201 7.14190 7.30165 7.32922 7.52310 7.81619 7.85691 7.99472 8.19526 8.27563 8.58758 9.09348 9.68604 11.16232 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.015598 B = 0.005443 C = 0.004327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.674191 B = 5142.879304 C = 6469.348091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.058 3.942 3 O -0.372 6.372 4 C 0.091 3.909 5 C -0.109 4.109 6 C -0.149 4.149 7 C 0.089 3.911 8 N -0.533 5.533 9 C 0.062 3.938 10 C -0.117 4.117 11 C -0.110 4.110 12 C 0.054 3.946 13 H 0.032 0.968 14 C -0.511 4.511 15 H 0.053 0.947 16 C 0.062 3.938 17 N -0.889 5.889 18 Si 0.888 3.112 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.275 1.275 22 C 0.065 3.935 23 C -0.110 4.110 24 C -0.137 4.137 25 H 0.066 0.934 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.045 0.955 29 H 0.042 0.958 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.026 0.974 37 H 0.054 0.946 38 H 0.044 0.956 39 H 0.059 0.941 40 H 0.028 0.972 41 H 0.089 0.911 42 H 0.258 0.742 43 H 0.063 0.937 44 H 0.020 0.980 45 H 0.078 0.922 46 H 0.066 0.934 47 H 0.060 0.940 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.019 -12.669 9.779 18.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.019 4.019 3 O -0.291 6.291 4 C 0.033 3.967 5 C -0.147 4.147 6 C -0.188 4.188 7 C -0.020 4.020 8 N -0.255 5.255 9 C -0.066 4.066 10 C -0.155 4.155 11 C -0.148 4.148 12 C 0.035 3.965 13 H 0.050 0.950 14 C -0.549 4.549 15 H 0.071 0.929 16 C -0.139 4.139 17 N -0.529 5.529 18 Si 0.716 3.284 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.200 1.200 22 C -0.061 4.061 23 C -0.148 4.148 24 C -0.176 4.176 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.044 0.956 37 H 0.072 0.928 38 H 0.062 0.938 39 H 0.078 0.922 40 H 0.047 0.953 41 H 0.107 0.893 42 H 0.068 0.932 43 H 0.081 0.919 44 H 0.038 0.962 45 H 0.096 0.904 46 H 0.085 0.915 47 H 0.079 0.921 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.070 -12.304 9.183 17.832 hybrid contribution -1.211 -0.362 0.739 1.464 sum 7.858 -12.666 9.922 17.906 Atomic orbital electron populations 1.21741 0.93835 1.01879 1.03514 1.22447 0.95634 0.84409 0.99385 1.88013 1.20663 1.25518 1.94949 1.22076 0.81521 0.97575 0.95540 1.21556 1.00112 0.94089 0.98923 1.22160 1.02385 0.96926 0.97329 1.21655 0.98318 0.91176 0.90853 1.62267 1.15207 1.00675 1.47401 1.22010 0.98506 0.90811 0.95235 1.21678 0.99804 0.94863 0.99190 1.21642 0.90764 1.03023 0.99369 1.18669 0.94513 0.89157 0.94155 0.95009 1.21175 0.92895 1.08841 1.32033 0.92915 1.24927 0.97995 0.95361 0.95576 1.69899 1.35279 1.12749 1.34933 0.86664 0.86137 0.78234 0.77358 1.20843 1.21306 1.19996 1.22348 0.84253 1.00932 0.98595 1.21555 1.02177 0.92301 0.98720 1.22005 1.00375 0.99188 0.95999 0.91488 0.91958 0.91455 0.93694 0.94019 0.92864 0.91113 0.91915 0.90627 0.92211 0.91373 0.95592 0.92794 0.93767 0.92243 0.95311 0.89255 0.93182 0.91853 0.96183 0.90378 0.91544 0.92086 0.91402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 10.28 37.16 0.38 -1.21 16 2 C 0.06 0.63 6.47 37.16 0.24 0.87 16 3 O -0.37 -5.06 8.64 -35.23 -0.30 -5.37 16 4 C 0.09 1.05 2.92 -26.73 -0.08 0.98 16 5 C -0.11 -1.28 5.66 -26.73 -0.15 -1.43 16 6 C -0.15 -2.19 4.34 -26.73 -0.12 -2.30 16 7 C 0.09 1.38 2.36 -67.71 -0.16 1.22 16 8 N -0.53 -10.13 4.71 -226.69 -1.07 -11.20 16 9 C 0.06 1.14 4.77 -3.83 -0.02 1.12 16 10 C -0.12 -2.38 6.09 -26.65 -0.16 -2.55 16 11 C -0.11 -2.69 5.03 -26.60 -0.13 -2.82 16 12 C 0.05 1.39 2.26 -91.69 -0.21 1.18 16 13 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 14 C -0.51 -14.35 8.57 -34.44 -0.29 -14.64 16 15 H 0.05 1.47 7.75 -52.48 -0.41 1.07 16 16 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 17 N -0.89 -25.88 11.35 55.43 0.63 -25.25 16 18 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 22 C 0.07 1.44 3.89 -3.83 -0.01 1.42 16 23 C -0.11 -1.64 4.56 -26.73 -0.12 -1.76 16 24 C -0.14 -1.61 5.63 -26.73 -0.15 -1.76 16 25 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.04 0.45 7.87 -51.92 -0.41 0.04 16 29 H 0.04 0.39 8.08 -51.93 -0.42 -0.03 16 30 H 0.05 0.52 7.79 -51.93 -0.40 0.12 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.08 1.32 6.29 -51.93 -0.33 0.99 16 34 H 0.06 0.87 6.48 -51.93 -0.34 0.54 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.03 0.48 6.59 -51.93 -0.34 0.13 16 37 H 0.05 0.87 8.12 -51.93 -0.42 0.45 16 38 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.09 2.43 6.15 -51.93 -0.32 2.11 16 42 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 43 H 0.06 1.40 5.84 -51.93 -0.30 1.10 16 44 H 0.02 0.46 6.82 -51.93 -0.35 0.10 16 45 H 0.08 1.34 5.73 -51.93 -0.30 1.04 16 46 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 47 H 0.06 0.67 7.87 -51.93 -0.41 0.26 16 48 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 351.07 15.07 5.29 5.29 Total: -1.00 -29.09 351.07 -10.51 -39.60 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -8.96 Total: 0.26 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: -1.08 Total: -20.02 kcal Atomic # 7 Polarization: -36.01 SS G_CDS: -0.44 Total: -36.45 kcal Atomic # 8 Polarization: -5.06 SS G_CDS: -0.30 Total: -5.37 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.09 -10.51 -39.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256442590.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.360 kcal (2) G-P(sol) polarization free energy of solvation -29.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds