Wall clock time and date at job start Tue Mar 31 2020 05:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52722 * 1 3 3 H 1.10929 * 107.00242 * 2 1 4 4 C 1.52758 * 110.43122 * 243.85676 * 2 1 3 5 5 C 1.53005 * 109.83576 * 284.46795 * 4 2 1 6 6 H 1.08771 * 110.28827 * 61.88381 * 5 4 2 7 7 N 1.47187 * 109.25750 * 181.69704 * 5 4 2 8 8 C 1.46894 * 111.00128 * 302.17338 * 7 5 4 9 9 C 1.50704 * 109.47097 * 168.75670 * 8 7 5 10 10 H 1.07997 * 119.99997 * 355.20163 * 9 8 7 11 11 C 1.37874 * 120.00094 * 175.20607 * 9 8 7 12 12 N 1.31514 * 119.99870 * 179.97438 * 11 9 8 13 13 Si 1.86806 * 119.99856 * 359.97438 * 11 9 8 14 14 H 1.48499 * 109.47169 * 89.99956 * 13 11 9 15 15 H 1.48504 * 109.46869 * 209.99861 * 13 11 9 16 16 H 1.48495 * 109.46988 * 329.99490 * 13 11 9 17 17 C 1.46899 * 110.99546 * 178.21869 * 7 5 4 18 18 C 1.54260 * 110.03531 * 26.22882 * 17 7 5 19 19 C 1.54887 * 104.19961 * 217.10446 * 18 17 7 20 20 C 1.54894 * 102.74956 * 37.94018 * 19 18 17 21 21 C 1.53876 * 110.03340 * 269.05983 * 17 7 5 22 22 C 1.52923 * 108.72729 * 300.90582 * 5 4 2 23 23 C 1.52555 * 110.41617 * 57.76081 * 22 5 4 24 24 H 1.11027 * 107.02726 * 194.06415 * 23 22 5 25 25 C 1.52876 * 110.29450 * 78.28704 * 23 22 5 26 26 O 1.41084 * 112.82331 * 312.11329 * 23 22 5 27 27 H 1.09005 * 109.47155 * 176.13796 * 1 2 3 28 28 H 1.08995 * 109.47572 * 296.14459 * 1 2 3 29 29 H 1.09008 * 109.47071 * 56.14681 * 1 2 3 30 30 H 1.09173 * 109.52125 * 44.64943 * 4 2 1 31 31 H 1.09149 * 109.55753 * 164.22338 * 4 2 1 32 32 H 1.09001 * 109.46869 * 288.75321 * 8 7 5 33 33 H 1.08990 * 109.47592 * 48.75309 * 8 7 5 34 34 H 0.97007 * 119.99494 * 180.02562 * 12 11 9 35 35 H 1.09001 * 110.01719 * 147.67422 * 17 7 5 36 36 H 1.09000 * 110.48856 * 335.78766 * 18 17 7 37 37 H 1.09004 * 110.48820 * 98.42656 * 18 17 7 38 38 H 1.09004 * 110.75823 * 279.63003 * 19 18 17 39 39 H 1.09000 * 110.91949 * 156.32872 * 19 18 17 40 40 H 1.08998 * 110.48698 * 203.38178 * 20 19 18 41 41 H 1.09005 * 110.59367 * 80.79052 * 20 19 18 42 42 H 1.09000 * 110.03540 * 238.56986 * 21 17 7 43 43 H 1.09002 * 110.02921 * 359.95609 * 21 17 7 44 44 H 1.09281 * 109.31443 * 297.24281 * 22 5 4 45 45 H 1.09268 * 109.34653 * 178.34305 * 22 5 4 46 46 H 1.09000 * 109.47242 * 293.40282 * 25 23 22 47 47 H 1.09000 * 109.47039 * 53.40674 * 25 23 22 48 48 H 1.09007 * 109.46821 * 173.40224 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5272 0.0000 0.0000 3 1 1.8516 1.0608 0.0000 4 6 2.0605 -0.6307 -1.2850 5 6 1.9047 -2.1515 -1.2204 6 1 0.8538 -2.4199 -1.1393 7 7 2.4591 -2.7487 -2.4461 8 6 1.7934 -2.2124 -3.6407 9 6 2.5585 -2.6272 -4.8710 10 1 3.4913 -3.1625 -4.7719 11 6 2.0678 -2.3233 -6.1231 12 7 2.7358 -2.6848 -7.1967 13 14 0.4541 -1.3980 -6.2945 14 1 0.7211 0.0627 -6.3171 15 1 -0.2143 -1.7986 -7.5587 16 1 -0.4271 -1.7225 -5.1442 17 6 2.3673 -4.2143 -2.4055 18 6 1.2010 -4.6457 -1.4927 19 6 1.7261 -5.9170 -0.7806 20 6 3.2155 -5.5761 -0.5267 21 6 3.6482 -4.8059 -1.7914 22 6 2.6789 -2.6733 -0.0093 23 6 2.1745 -2.0124 1.2698 24 1 2.9232 -2.2236 2.0620 25 6 0.8635 -2.6581 1.7188 26 8 2.0627 -0.6108 1.1543 27 1 -0.3634 -1.0254 -0.0692 28 1 -0.3634 0.4528 0.9224 29 1 -0.3634 0.5725 -0.8535 30 1 1.5018 -0.2448 -2.1399 31 1 3.1155 -0.3783 -1.4055 32 1 0.7771 -2.6025 -3.6962 33 1 1.7623 -1.1246 -3.5818 34 1 2.3907 -2.4706 -8.0777 35 1 2.2200 -4.6069 -3.4116 36 1 0.9774 -3.8656 -0.7650 37 1 0.3175 -4.8788 -2.0870 38 1 1.6344 -6.7886 -1.4288 39 1 1.2014 -6.0807 0.1607 40 1 3.8021 -6.4881 -0.4160 41 1 3.3195 -4.9470 0.3574 42 1 4.1219 -5.4862 -2.4990 43 1 4.3382 -4.0055 -1.5242 44 1 3.7419 -2.4545 -0.1381 45 1 2.5503 -3.7559 0.0636 46 1 0.0824 -2.4385 0.9910 47 1 0.9971 -3.7372 1.7940 48 1 0.5764 -2.2588 2.6916 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257095182.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:13 Heat of formation + Delta-G solvation = -29.858560 kcal Electronic energy + Delta-G solvation = -24988.389112 eV Core-core repulsion = 21850.686143 eV Total energy + Delta-G solvation = -3137.702968 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.53391 -38.26391 -35.13470 -33.13593 -32.84787 -31.70625 -29.30520 -28.42302 -28.13437 -26.05298 -25.61157 -22.94812 -22.53828 -21.22734 -20.23609 -18.78542 -18.27297 -16.85639 -16.26453 -16.10299 -15.44186 -15.30483 -14.54842 -14.50496 -14.02638 -13.82845 -13.63013 -13.05117 -12.88731 -12.78125 -12.53152 -12.47763 -12.34446 -12.20974 -12.03635 -11.47563 -11.09158 -10.97846 -10.88467 -10.84527 -10.71449 -10.67134 -10.58237 -10.27759 -10.02384 -9.98209 -9.85991 -9.67152 -9.54837 -9.26994 -9.21143 -8.56426 -7.29162 -6.05879 -4.02220 3.25662 3.33581 3.34640 3.79321 4.40162 4.58325 4.84668 4.91617 4.99821 5.03124 5.09381 5.13318 5.21264 5.25391 5.31629 5.46478 5.54202 5.56910 5.61230 5.65726 5.76935 5.84279 5.90041 5.92001 5.93065 5.95241 6.02214 6.09972 6.14512 6.17441 6.21547 6.24767 6.35203 6.37406 6.43972 6.50726 6.60465 6.64766 6.75312 6.84461 6.95977 7.02507 7.63329 7.82115 7.97600 8.11708 8.67436 9.05003 9.56552 11.07363 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.015235 B = 0.007324 C = 0.005588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.401568 B = 3822.090354 C = 5009.653420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.101 3.899 3 H 0.089 0.911 4 C -0.148 4.148 5 C 0.084 3.916 6 H 0.042 0.958 7 N -0.515 5.515 8 C 0.156 3.844 9 C -0.505 4.505 10 H 0.081 0.919 11 C 0.069 3.931 12 N -0.900 5.900 13 Si 0.870 3.130 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.268 1.268 17 C 0.088 3.912 18 C -0.177 4.177 19 C -0.120 4.120 20 C -0.135 4.135 21 C -0.114 4.114 22 C -0.173 4.173 23 C 0.101 3.899 24 H 0.085 0.915 25 C -0.182 4.182 26 O -0.380 6.380 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.078 0.922 32 H -0.013 1.013 33 H 0.028 0.972 34 H 0.263 0.737 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.056 0.944 38 H 0.064 0.936 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.071 0.929 42 H 0.059 0.941 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.107 0.893 46 H 0.058 0.942 47 H 0.063 0.937 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.589 -0.978 17.072 17.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.043 3.957 3 H 0.107 0.893 4 C -0.186 4.186 5 C -0.024 4.024 6 H 0.060 0.940 7 N -0.237 5.237 8 C 0.030 3.970 9 C -0.543 4.543 10 H 0.099 0.901 11 C -0.133 4.133 12 N -0.539 5.539 13 Si 0.697 3.303 14 H -0.202 1.202 15 H -0.212 1.212 16 H -0.193 1.193 17 C -0.021 4.021 18 C -0.215 4.215 19 C -0.158 4.158 20 C -0.172 4.172 21 C -0.152 4.152 22 C -0.210 4.210 23 C 0.043 3.957 24 H 0.103 0.897 25 C -0.239 4.239 26 O -0.299 6.299 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.005 0.995 33 H 0.045 0.955 34 H 0.073 0.927 35 H 0.111 0.889 36 H 0.106 0.894 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.089 0.911 42 H 0.078 0.922 43 H 0.093 0.907 44 H 0.093 0.907 45 H 0.125 0.875 46 H 0.077 0.923 47 H 0.082 0.918 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.023 -0.724 16.942 17.225 hybrid contribution -1.919 0.098 -0.660 2.032 sum -4.942 -0.626 16.282 17.027 Atomic orbital electron populations 1.22442 0.96916 1.02383 1.02033 1.21875 0.92456 0.96339 0.85046 0.89348 1.22316 1.03145 0.95832 0.97272 1.21472 0.96089 0.93536 0.91352 0.94013 1.62297 1.56187 1.04143 1.01099 1.20294 0.92646 0.95331 0.88719 1.21041 1.08535 1.36682 0.88068 0.90107 1.24891 0.96862 0.95650 0.95879 1.69896 1.38943 1.47279 0.97832 0.86942 0.84893 0.80731 0.77696 1.20171 1.21246 1.19267 1.22259 0.92154 0.88222 0.99488 1.23477 0.99498 0.98268 1.00269 1.22417 0.95864 0.97998 0.99560 1.22631 0.96075 0.99630 0.98855 1.22266 0.98257 0.99054 0.95640 1.22969 1.01264 1.03332 0.93477 1.21850 0.96144 0.80554 0.97196 0.89707 1.22502 0.98979 1.00763 1.01657 1.86633 1.82548 1.20513 1.40214 0.92445 0.92247 0.91660 0.90421 0.90306 0.99505 0.95459 0.92731 0.88882 0.89392 0.92469 0.91734 0.92451 0.92278 0.91065 0.92175 0.90707 0.90677 0.87547 0.92335 0.91792 0.92344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.24 9.14 37.01 0.34 -1.90 16 2 C 0.10 1.38 3.36 -27.00 -0.09 1.29 16 3 H 0.09 1.12 8.29 -50.82 -0.42 0.69 16 4 C -0.15 -2.38 4.50 -26.85 -0.12 -2.50 16 5 C 0.08 1.39 1.24 -67.59 -0.08 1.30 16 6 H 0.04 0.71 4.64 -52.06 -0.24 0.47 16 7 N -0.51 -10.26 4.14 -218.74 -0.91 -11.16 16 8 C 0.16 3.68 3.55 -4.98 -0.02 3.67 16 9 C -0.50 -14.09 8.66 -34.44 -0.30 -14.38 16 10 H 0.08 2.48 8.03 -52.49 -0.42 2.05 16 11 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 12 N -0.90 -27.41 13.96 55.43 0.77 -26.64 16 13 Si 0.87 21.34 27.57 -169.99 -4.69 16.65 16 14 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 15 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 16 H -0.27 -6.34 6.41 56.52 0.36 -5.98 16 17 C 0.09 1.62 2.70 -66.60 -0.18 1.44 16 18 C -0.18 -2.73 5.39 -25.08 -0.14 -2.86 16 19 C -0.12 -1.53 6.75 -24.74 -0.17 -1.70 16 20 C -0.13 -1.70 6.11 -25.07 -0.15 -1.85 16 21 C -0.11 -1.82 5.73 -25.61 -0.15 -1.96 16 22 C -0.17 -2.43 2.96 -27.00 -0.08 -2.51 16 23 C 0.10 1.27 3.36 -27.02 -0.09 1.18 16 24 H 0.09 0.97 8.29 -50.76 -0.42 0.55 16 25 C -0.18 -2.02 8.79 37.09 0.33 -1.70 16 26 O -0.38 -5.37 9.87 -34.59 -0.34 -5.71 16 27 H 0.06 0.74 5.16 -51.93 -0.27 0.47 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 30 H 0.08 1.33 6.14 -51.83 -0.32 1.01 16 31 H 0.08 1.34 8.15 -51.84 -0.42 0.92 16 32 H -0.01 -0.31 6.83 -51.93 -0.35 -0.67 16 33 H 0.03 0.65 5.38 -51.93 -0.28 0.37 16 34 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 35 H 0.09 2.04 6.89 -51.93 -0.36 1.68 16 36 H 0.09 1.30 3.16 -51.93 -0.16 1.14 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.83 5.88 -51.93 -0.31 0.53 16 42 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.07 1.25 6.88 -51.93 -0.36 0.89 16 44 H 0.07 1.14 7.60 -51.77 -0.39 0.74 16 45 H 0.11 1.40 1.59 -51.78 -0.08 1.32 16 46 H 0.06 0.70 5.42 -51.93 -0.28 0.42 16 47 H 0.06 0.64 8.05 -51.93 -0.42 0.22 16 48 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 LS Contribution 333.66 15.07 5.03 5.03 Total: -1.00 -29.43 333.66 -9.19 -38.62 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -8.06 Total: 3.83 kcal Atomic # 6 Polarization: -19.63 SS G_CDS: -1.00 Total: -20.62 kcal Atomic # 7 Polarization: -37.67 SS G_CDS: -0.13 Total: -37.80 kcal Atomic # 8 Polarization: -5.37 SS G_CDS: -0.34 Total: -5.71 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.69 Total: 16.65 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.43 -9.19 -38.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257095182.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.765 kcal (2) G-P(sol) polarization free energy of solvation -29.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds