Wall clock time and date at job start Tue Mar 31 2020 05:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47893 * 2 1 4 4 C 1.53090 * 109.47906 * 239.97508 * 2 1 3 5 5 C 1.53177 * 109.16113 * 182.39512 * 4 2 1 6 6 N 1.46903 * 109.54456 * 176.85150 * 5 4 2 7 7 C 1.46900 * 110.99855 * 56.04413 * 6 5 4 8 8 C 1.50703 * 109.46917 * 186.02027 * 7 6 5 9 9 H 1.08003 * 119.99735 * 5.52963 * 8 7 6 10 10 C 1.37870 * 120.00020 * 185.52423 * 8 7 6 11 11 N 1.31515 * 120.00077 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 119.99998 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47726 * 59.99856 * 12 10 8 14 14 H 1.48504 * 109.47216 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.47304 * 299.99924 * 12 10 8 16 16 C 1.46895 * 111.00162 * 180.02562 * 6 5 4 17 17 C 1.54262 * 110.03165 * 267.71194 * 16 6 5 18 18 C 1.54887 * 104.19680 * 217.10558 * 17 16 6 19 19 C 1.54881 * 102.74818 * 37.94473 * 18 17 16 20 20 C 1.53875 * 110.03341 * 150.54498 * 16 6 5 21 21 C 1.53180 * 109.03592 * 56.98519 * 5 4 2 22 22 C 1.53094 * 109.16133 * 303.01627 * 21 5 4 23 23 H 1.08996 * 109.48012 * 177.58899 * 22 21 5 24 24 C 1.53003 * 109.49233 * 297.62264 * 22 21 5 25 25 O 1.42902 * 109.41563 * 57.60904 * 22 21 5 26 26 H 1.09007 * 109.46951 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47197 * 300.02328 * 1 2 3 28 28 H 1.08995 * 109.47226 * 60.02252 * 1 2 3 29 29 H 1.09000 * 109.51979 * 62.49306 * 4 2 1 30 30 H 1.08994 * 109.57331 * 302.33233 * 4 2 1 31 31 H 1.08996 * 109.54643 * 297.02977 * 5 4 2 32 32 H 1.08999 * 109.47430 * 306.02399 * 7 6 5 33 33 H 1.08999 * 109.47012 * 66.02540 * 7 6 5 34 34 H 0.96995 * 120.00061 * 179.97438 * 11 10 8 35 35 H 1.09001 * 110.01910 * 29.15452 * 16 6 5 36 36 H 1.08998 * 110.48508 * 335.78419 * 17 16 6 37 37 H 1.09002 * 110.48727 * 98.42728 * 17 16 6 38 38 H 1.09005 * 110.75822 * 279.62256 * 18 17 16 39 39 H 1.09004 * 110.75692 * 156.25648 * 18 17 16 40 40 H 1.09007 * 110.48844 * 203.38271 * 19 18 17 41 41 H 1.08997 * 110.60633 * 80.79359 * 19 18 17 42 42 H 1.09004 * 110.03395 * 238.56907 * 20 16 6 43 43 H 1.08999 * 110.03213 * 359.97438 * 20 16 6 44 44 H 1.08991 * 109.52521 * 62.92295 * 21 5 4 45 45 H 1.09003 * 109.52155 * 183.11468 * 21 5 4 46 46 H 1.08991 * 109.47258 * 179.97438 * 24 22 21 47 47 H 1.09000 * 109.46989 * 299.94908 * 24 22 21 48 48 H 1.08993 * 109.47000 * 59.94477 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0405 -0.7222 -1.2496 5 6 3.5710 -0.7705 -1.2123 6 7 4.0672 -1.5275 -2.3695 7 6 3.5697 -0.9532 -3.6267 8 6 3.9748 -1.8375 -4.7778 9 1 4.4663 -2.7802 -4.5875 10 6 3.7179 -1.4432 -6.0737 11 7 3.1189 -0.2956 -6.3053 12 14 4.2195 -2.5396 -7.5004 13 1 3.5334 -3.8512 -7.3819 14 1 3.8347 -1.8930 -8.7807 15 1 5.6898 -2.7460 -7.4731 16 6 5.5346 -1.5943 -2.3650 17 6 6.1192 -0.4271 -3.1869 18 6 7.3499 -1.0424 -3.8982 19 6 6.8595 -2.4665 -4.2590 20 6 6.0053 -2.8910 -3.0466 21 6 4.0178 -1.4597 0.0806 22 6 3.4309 -0.7091 1.2789 23 1 3.7103 -1.2200 2.2002 24 6 3.9760 0.7204 1.3027 25 8 2.0068 -0.6741 1.1664 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5142 0.8898 28 1 -0.3633 0.5135 -0.8901 29 1 1.7146 -0.1842 -2.1398 30 1 1.6444 -1.7374 -1.2720 31 1 3.9688 0.2439 -1.2426 32 1 2.4827 -0.8817 -3.5885 33 1 3.9946 0.0409 -3.7653 34 1 2.9385 -0.0180 -7.2170 35 1 5.9068 -1.5543 -1.3413 36 1 5.3925 -0.0743 -3.9187 37 1 6.4258 0.3865 -2.5295 38 1 8.2041 -1.0875 -3.2225 39 1 7.5973 -0.4794 -4.7982 40 1 7.7063 -3.1414 -4.3840 41 1 6.2529 -2.4454 -5.1644 42 1 6.6066 -3.4800 -2.3540 43 1 5.1448 -3.4710 -3.3804 44 1 3.6617 -2.4898 0.0862 45 1 5.1061 -1.4492 0.1417 46 1 3.5576 1.2546 2.1556 47 1 5.0623 0.6936 1.3885 48 1 3.6969 1.2310 0.3811 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257095183.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:23 Heat of formation + Delta-G solvation = -37.203243 kcal Electronic energy + Delta-G solvation = -24672.515687 eV Core-core repulsion = 21534.494229 eV Total energy + Delta-G solvation = -3138.021458 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.98609 -38.28491 -34.73288 -33.25866 -32.69684 -31.24418 -28.81894 -28.05832 -27.75388 -26.20255 -25.32741 -23.00465 -21.68796 -21.10391 -19.87533 -19.02139 -18.17939 -16.89576 -16.03582 -15.78797 -15.18396 -14.95145 -14.57896 -14.40450 -14.11195 -13.49140 -13.28454 -12.89987 -12.81426 -12.52128 -12.24741 -12.16827 -11.92849 -11.80157 -11.68802 -11.40523 -11.14367 -10.87724 -10.79785 -10.72301 -10.64400 -10.40301 -10.29572 -10.23924 -10.03377 -9.90294 -9.68946 -9.40858 -9.23874 -9.11488 -8.77673 -8.37328 -7.08352 -6.00236 -3.97562 3.31745 3.37143 3.39431 3.94476 4.42232 4.74691 4.95660 5.05978 5.18875 5.33361 5.34627 5.37068 5.45136 5.47925 5.51955 5.57113 5.67347 5.71565 5.76285 5.84875 5.94634 6.01671 6.04236 6.18236 6.20112 6.24927 6.30312 6.31020 6.39771 6.43886 6.46640 6.52333 6.61830 6.70368 6.73749 6.75780 6.84806 7.03602 7.09751 7.28952 7.45344 7.49599 7.60500 7.93553 8.16390 8.27086 8.62757 9.09547 9.64319 11.11018 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.019059 B = 0.006134 C = 0.005085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.746786 B = 4563.790860 C = 5505.351138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.084 3.916 3 H 0.055 0.945 4 C -0.140 4.140 5 C 0.086 3.914 6 N -0.527 5.527 7 C 0.182 3.818 8 C -0.504 4.504 9 H 0.080 0.920 10 C 0.056 3.944 11 N -0.901 5.901 12 Si 0.883 3.117 13 H -0.277 1.277 14 H -0.290 1.290 15 H -0.275 1.275 16 C 0.095 3.905 17 C -0.168 4.168 18 C -0.111 4.111 19 C -0.124 4.124 20 C -0.105 4.105 21 C -0.142 4.142 22 C 0.091 3.909 23 H 0.096 0.904 24 C -0.186 4.186 25 O -0.378 6.378 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.030 0.970 32 H 0.029 0.971 33 H 0.007 0.993 34 H 0.259 0.741 35 H 0.057 0.943 36 H 0.118 0.882 37 H 0.035 0.965 38 H 0.045 0.955 39 H 0.053 0.947 40 H 0.040 0.960 41 H 0.087 0.913 42 H 0.038 0.962 43 H 0.087 0.913 44 H 0.077 0.923 45 H 0.069 0.931 46 H 0.058 0.942 47 H 0.063 0.937 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.075 0.861 11.922 12.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.027 3.973 3 H 0.073 0.927 4 C -0.178 4.178 5 C -0.023 4.023 6 N -0.250 5.250 7 C 0.058 3.942 8 C -0.542 4.542 9 H 0.098 0.902 10 C -0.144 4.144 11 N -0.541 5.541 12 Si 0.711 3.289 13 H -0.203 1.203 14 H -0.216 1.216 15 H -0.200 1.200 16 C -0.014 4.014 17 C -0.206 4.206 18 C -0.149 4.149 19 C -0.162 4.162 20 C -0.143 4.143 21 C -0.180 4.180 22 C 0.032 3.968 23 H 0.114 0.886 24 C -0.244 4.244 25 O -0.298 6.298 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.089 0.911 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.048 0.952 32 H 0.047 0.953 33 H 0.024 0.976 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.136 0.864 37 H 0.054 0.946 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.059 0.941 41 H 0.105 0.895 42 H 0.056 0.944 43 H 0.105 0.895 44 H 0.095 0.905 45 H 0.087 0.913 46 H 0.077 0.923 47 H 0.082 0.918 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.688 0.405 11.940 12.066 hybrid contribution 0.872 0.501 -1.208 1.571 sum 2.560 0.906 10.733 11.071 Atomic orbital electron populations 1.21739 0.93429 1.02807 1.01937 1.22121 0.94635 0.95211 0.85375 0.92697 1.22315 0.95586 1.02323 0.97585 1.21526 0.94500 0.94836 0.91451 1.62459 1.07497 1.51950 1.03104 1.19977 0.95378 0.94125 0.84752 1.21537 1.37430 1.05571 0.89658 0.90196 1.24927 0.95731 0.95076 0.98715 1.69937 1.42771 1.20961 1.20429 0.86809 0.79090 0.80969 0.82001 1.20258 1.21575 1.20033 1.22086 0.88044 0.94561 0.96677 1.23316 0.99015 0.97457 1.00769 1.22240 0.96731 0.96969 0.98958 1.22488 0.98152 0.95066 1.00470 1.22220 0.99286 0.97056 0.95740 1.22317 1.00523 1.00842 0.94279 1.22119 0.81070 0.95166 0.98406 0.88587 1.22463 1.01499 0.97868 1.02532 1.87914 1.20579 1.77928 1.43389 0.91865 0.92427 0.91096 0.90257 0.90484 0.95243 0.95295 0.97593 0.93101 0.92536 0.86448 0.94599 0.93577 0.92784 0.94093 0.89464 0.94357 0.89455 0.90460 0.91295 0.92294 0.91797 0.91711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.56 37.16 0.36 -1.44 16 2 C 0.08 1.23 2.94 -26.68 -0.08 1.15 16 3 H 0.06 0.78 6.34 -51.93 -0.33 0.45 16 4 C -0.14 -2.39 4.24 -26.59 -0.11 -2.50 16 5 C 0.09 1.50 1.70 -67.53 -0.12 1.38 16 6 N -0.53 -10.68 4.23 -218.60 -0.92 -11.60 16 7 C 0.18 4.39 3.89 -4.97 -0.02 4.37 16 8 C -0.50 -12.94 5.89 -34.44 -0.20 -13.14 16 9 H 0.08 2.02 3.57 -52.48 -0.19 1.83 16 10 C 0.06 1.51 5.46 -17.82 -0.10 1.41 16 11 N -0.90 -25.61 13.29 55.43 0.74 -24.87 16 12 Si 0.88 20.94 28.67 -169.99 -4.87 16.07 16 13 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 14 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 15 H -0.27 -6.34 7.09 56.52 0.40 -5.94 16 16 C 0.10 1.80 2.72 -66.60 -0.18 1.62 16 17 C -0.17 -3.28 5.74 -25.08 -0.14 -3.43 16 18 C -0.11 -2.01 6.91 -24.74 -0.17 -2.18 16 19 C -0.12 -2.36 6.22 -25.07 -0.16 -2.51 16 20 C -0.11 -1.98 5.65 -25.61 -0.14 -2.12 16 21 C -0.14 -2.11 4.73 -26.59 -0.13 -2.24 16 22 C 0.09 1.20 3.91 -26.68 -0.10 1.09 16 23 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 24 C -0.19 -2.23 8.65 37.16 0.32 -1.91 16 25 O -0.38 -5.67 10.24 -35.23 -0.36 -6.03 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.08 1.48 6.42 -51.93 -0.33 1.14 16 30 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 31 H 0.03 0.54 6.62 -51.93 -0.34 0.19 16 32 H 0.03 0.76 5.98 -51.93 -0.31 0.45 16 33 H 0.01 0.17 5.64 -51.93 -0.29 -0.12 16 34 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 35 H 0.06 0.98 5.56 -51.93 -0.29 0.69 16 36 H 0.12 2.75 4.12 -51.93 -0.21 2.54 16 37 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.04 0.69 8.14 -51.92 -0.42 0.26 16 41 H 0.09 1.91 5.21 -51.93 -0.27 1.64 16 42 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.09 1.83 5.78 -51.93 -0.30 1.53 16 44 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.07 0.98 6.14 -51.93 -0.32 0.66 16 46 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 47 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 48 H 0.06 0.85 4.98 -51.93 -0.26 0.59 16 LS Contribution 336.46 15.07 5.07 5.07 Total: -1.00 -27.09 336.46 -9.41 -36.50 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -8.08 Total: 5.32 kcal Atomic # 6 Polarization: -19.49 SS G_CDS: -0.98 Total: -20.46 kcal Atomic # 7 Polarization: -36.28 SS G_CDS: -0.19 Total: -36.47 kcal Atomic # 8 Polarization: -5.67 SS G_CDS: -0.36 Total: -6.03 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.87 Total: 16.07 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -27.09 -9.41 -36.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257095183.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.706 kcal (2) G-P(sol) polarization free energy of solvation -27.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds