Wall clock time and date at job start Tue Mar 31 2020 05:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 N 1.46297 * 114.00326 * 2 1 4 4 C 1.46904 * 110.99862 * 119.64942 * 3 2 1 5 5 C 1.52997 * 109.47331 * 190.40833 * 4 3 2 6 6 H 1.08995 * 109.46732 * 303.40330 * 5 4 3 7 7 C 1.52997 * 109.47047 * 63.40105 * 5 4 3 8 8 C 1.53002 * 109.47304 * 180.02562 * 7 5 4 9 9 C 1.53006 * 109.46610 * 300.00038 * 8 7 5 10 10 C 1.53002 * 109.47025 * 60.00133 * 9 8 7 11 11 H 1.09002 * 109.46841 * 179.97438 * 10 9 8 12 12 C 1.53003 * 109.47079 * 59.99666 * 10 9 8 13 13 C 1.52995 * 109.47180 * 183.40334 * 5 4 3 14 14 C 1.46892 * 111.00039 * 243.60411 * 3 2 1 15 15 C 1.53000 * 109.47014 * 66.52768 * 14 3 2 16 16 C 1.50697 * 115.55047 * 63.99170 * 15 14 3 17 17 H 1.08003 * 119.99706 * 269.63619 * 16 15 14 18 18 C 1.37877 * 120.00527 * 89.35997 * 16 15 14 19 19 N 1.31516 * 120.00233 * 183.85257 * 18 16 15 20 20 Si 1.86800 * 119.99588 * 3.86079 * 18 16 15 21 21 H 1.48496 * 109.47446 * 94.22662 * 20 18 16 22 22 H 1.48503 * 109.47158 * 214.22393 * 20 18 16 23 23 H 1.48500 * 109.47231 * 334.22226 * 20 18 16 24 24 C 1.52997 * 117.51518 * 209.68752 * 15 14 3 25 25 C 1.53000 * 117.49959 * 278.31634 * 15 14 3 26 26 H 1.09000 * 109.47555 * 184.96960 * 1 2 3 27 27 H 1.09007 * 109.47411 * 304.96775 * 1 2 3 28 28 H 1.09000 * 109.47297 * 64.96787 * 1 2 3 29 29 H 1.09007 * 109.47220 * 310.41319 * 4 3 2 30 30 H 1.09001 * 109.46544 * 70.40801 * 4 3 2 31 31 H 1.09002 * 109.47133 * 300.00466 * 7 5 4 32 32 H 1.09000 * 109.47245 * 60.00003 * 7 5 4 33 33 H 1.08997 * 109.47094 * 180.02562 * 8 7 5 34 34 H 1.08995 * 109.46752 * 60.00055 * 8 7 5 35 35 H 1.09000 * 109.47139 * 299.99689 * 9 8 7 36 36 H 1.09005 * 109.46654 * 179.97438 * 9 8 7 37 37 H 1.09002 * 109.47002 * 299.99556 * 12 10 9 38 38 H 1.08999 * 109.46950 * 59.99698 * 12 10 9 39 39 H 1.09001 * 109.46627 * 179.97438 * 12 10 9 40 40 H 1.09002 * 109.47087 * 300.00312 * 13 5 4 41 41 H 1.09001 * 109.47561 * 59.99873 * 13 5 4 42 42 H 1.08999 * 109.47510 * 306.52366 * 14 3 2 43 43 H 1.09004 * 109.46733 * 186.52083 * 14 3 2 44 44 H 0.96998 * 119.99955 * 184.99896 * 19 18 16 45 45 H 1.09002 * 117.50177 * 214.96792 * 24 15 14 46 46 H 1.08996 * 117.50285 * 359.97438 * 24 15 14 47 47 H 1.09006 * 117.49659 * 359.97438 * 25 15 14 48 48 H 1.08998 * 117.49905 * 144.97408 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0241 1.3365 0.0000 4 6 2.8580 1.5414 1.1919 5 6 3.2497 3.0169 1.2928 6 1 3.7569 3.3215 0.3774 7 6 1.9919 3.8664 1.4858 8 6 2.3835 5.3420 1.5861 9 6 3.3212 5.5408 2.7787 10 6 4.5790 4.6913 2.5856 11 1 5.2473 4.8333 3.4350 12 6 5.2907 5.1187 1.3003 13 6 4.1871 3.2153 2.4856 14 6 2.7952 1.5693 -1.2284 15 6 1.8456 1.6051 -2.4275 16 6 0.8437 2.7308 -2.4299 17 1 -0.1244 2.5930 -1.9714 18 6 1.1649 3.9385 -3.0124 19 7 0.3206 4.9448 -2.9482 20 14 2.7994 4.1452 -3.8929 21 1 2.6179 3.8789 -5.3425 22 1 3.2921 5.5331 -3.7025 23 1 3.7875 3.1881 -3.3336 24 6 2.3965 1.1469 -3.7793 25 6 1.4039 0.2650 -3.0191 26 1 -0.3634 -1.0238 0.0890 27 1 -0.3634 0.5890 0.8422 28 1 -0.3634 0.4348 -0.9311 29 1 2.2979 1.2524 2.0813 30 1 3.7578 0.9310 1.1150 31 1 1.3241 3.7249 0.6361 32 1 1.4846 3.5617 2.4012 33 1 1.4875 5.9471 1.7241 34 1 2.8905 5.6463 0.6705 35 1 2.8142 5.2364 3.6943 36 1 3.6006 6.5921 2.8499 37 1 4.6226 4.9769 0.4508 38 1 5.5696 6.1699 1.3718 39 1 6.1870 4.5137 1.1631 40 1 3.6799 2.9105 3.4010 41 1 5.0832 2.6101 2.3481 42 1 3.5184 0.7648 -1.3615 43 1 3.3205 2.5214 -1.1525 44 1 0.5137 5.7706 -3.4190 45 1 2.0343 1.6595 -4.6704 46 1 3.4358 0.8203 -3.8147 47 1 1.7903 -0.6421 -2.5542 48 1 0.3886 0.1974 -3.4096 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001307818356.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:34 Heat of formation + Delta-G solvation = 7.124761 kcal Electronic energy + Delta-G solvation = -24551.829097 eV Core-core repulsion = 21415.729845 eV Total energy + Delta-G solvation = -3136.099251 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.21370 -37.47889 -35.67902 -33.81102 -31.97012 -31.28954 -30.42565 -26.68199 -26.57410 -25.60054 -25.13160 -22.81727 -21.94240 -21.56082 -20.20256 -18.95730 -18.30831 -16.56429 -15.80306 -15.38630 -14.90524 -14.76725 -14.59394 -14.25102 -13.90403 -13.67667 -13.56526 -13.15775 -12.91737 -12.66008 -12.47260 -12.37070 -12.02762 -11.67043 -11.61345 -11.27456 -11.26787 -11.06592 -10.98269 -10.79829 -10.79812 -10.41379 -10.34485 -10.04275 -9.81822 -9.71648 -9.61355 -9.49181 -9.15118 -8.96662 -8.44261 -8.34549 -7.84020 -5.99733 -3.99320 3.24327 3.33359 3.43136 3.47910 4.50089 4.84756 4.90860 4.93400 5.00884 5.28276 5.29714 5.45498 5.52213 5.60487 5.64037 5.74500 5.77744 5.79681 5.87451 5.89122 5.98575 6.04973 6.08869 6.10552 6.13724 6.15768 6.21809 6.21979 6.26042 6.27627 6.41840 6.44234 6.51041 6.54558 6.55785 6.56877 6.61220 6.68811 6.82769 6.91644 7.10321 7.13324 7.22809 7.57739 7.71732 7.89693 8.64404 9.05172 9.63957 11.11957 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.013961 B = 0.007815 C = 0.006126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.037353 B = 3582.071597 C = 4569.463859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 O -0.272 6.272 3 N -0.332 5.332 4 C 0.047 3.953 5 C -0.080 4.080 6 H 0.076 0.924 7 C -0.107 4.107 8 C -0.121 4.121 9 C -0.113 4.113 10 C -0.088 4.088 11 H 0.063 0.937 12 C -0.154 4.154 13 C -0.106 4.106 14 C 0.082 3.918 15 C 0.014 3.986 16 C -0.460 4.460 17 H 0.078 0.922 18 C 0.076 3.924 19 N -0.899 5.899 20 Si 0.871 3.129 21 H -0.283 1.283 22 H -0.297 1.297 23 H -0.259 1.259 24 C -0.206 4.206 25 C -0.173 4.173 26 H 0.070 0.930 27 H 0.036 0.964 28 H 0.056 0.944 29 H 0.074 0.926 30 H 0.029 0.971 31 H 0.093 0.907 32 H 0.050 0.950 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.054 0.946 37 H 0.067 0.933 38 H 0.050 0.950 39 H 0.049 0.951 40 H 0.060 0.940 41 H 0.056 0.944 42 H 0.017 0.983 43 H 0.085 0.915 44 H 0.261 0.739 45 H 0.085 0.915 46 H 0.068 0.932 47 H 0.071 0.929 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.850 -2.868 10.044 12.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 O -0.276 6.276 3 N -0.100 5.100 4 C -0.082 4.082 5 C -0.099 4.099 6 H 0.095 0.905 7 C -0.144 4.144 8 C -0.158 4.158 9 C -0.151 4.151 10 C -0.106 4.106 11 H 0.081 0.919 12 C -0.212 4.212 13 C -0.144 4.144 14 C -0.046 4.046 15 C 0.013 3.987 16 C -0.497 4.497 17 H 0.096 0.904 18 C -0.125 4.125 19 N -0.538 5.538 20 Si 0.699 3.301 21 H -0.210 1.210 22 H -0.224 1.224 23 H -0.183 1.183 24 C -0.244 4.244 25 C -0.210 4.210 26 H 0.088 0.912 27 H 0.055 0.945 28 H 0.075 0.925 29 H 0.092 0.908 30 H 0.048 0.952 31 H 0.112 0.888 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.036 0.964 43 H 0.103 0.897 44 H 0.071 0.929 45 H 0.103 0.897 46 H 0.086 0.914 47 H 0.090 0.910 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.554 -2.530 10.069 12.278 hybrid contribution 1.458 -0.244 -0.679 1.627 sum 8.012 -2.774 9.390 12.652 Atomic orbital electron populations 1.22491 0.81272 0.99751 1.01405 1.90518 1.20519 1.19643 1.96890 1.67613 1.33591 1.06973 1.01855 1.22418 0.95513 0.96156 0.94064 1.21205 0.96772 0.93307 0.98581 0.90535 1.21489 0.97025 0.93049 1.02878 1.21557 0.98772 0.97466 0.97998 1.21588 0.95883 0.98824 0.98796 1.21054 0.96641 0.95102 0.97812 0.91894 1.21977 1.00201 1.00552 0.98429 1.21583 0.98753 0.95767 0.98336 1.22233 0.93749 0.98778 0.89847 1.19288 0.96730 0.94718 0.87993 1.20176 0.99634 0.93365 1.36547 0.90369 1.24908 0.96194 0.95297 0.96075 1.69900 1.37121 1.04103 1.42639 0.86993 0.86036 0.76598 0.80428 1.20996 1.22436 1.18349 1.22979 0.96949 1.06377 0.98058 1.22772 0.98321 0.94757 1.05165 0.91192 0.94548 0.92508 0.90775 0.95235 0.88806 0.93105 0.92268 0.91697 0.92417 0.92683 0.91451 0.93086 0.93164 0.92100 0.92513 0.96435 0.89702 0.92908 0.89677 0.91358 0.91011 0.89988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.84 11.30 101.05 1.14 1.98 16 2 O -0.27 -5.26 9.90 -13.92 -0.14 -5.39 16 3 N -0.33 -6.47 4.04 -113.78 -0.46 -6.93 16 4 C 0.05 0.77 4.85 -3.82 -0.02 0.75 16 5 C -0.08 -1.22 1.84 -90.63 -0.17 -1.39 16 6 H 0.08 1.30 4.52 -51.93 -0.23 1.07 16 7 C -0.11 -1.76 5.08 -26.73 -0.14 -1.90 16 8 C -0.12 -1.84 5.65 -26.73 -0.15 -1.99 16 9 C -0.11 -1.41 5.45 -26.73 -0.15 -1.56 16 10 C -0.09 -1.05 3.20 -90.59 -0.29 -1.34 16 11 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 12 C -0.15 -1.94 8.50 37.16 0.32 -1.63 16 13 C -0.11 -1.33 4.74 -26.71 -0.13 -1.46 16 14 C 0.08 1.71 4.74 -3.83 -0.02 1.70 16 15 C 0.01 0.32 0.86 -155.66 -0.13 0.19 16 16 C -0.46 -12.27 9.34 -34.44 -0.32 -12.59 16 17 H 0.08 2.31 8.06 -52.48 -0.42 1.89 16 18 C 0.08 2.11 5.47 -17.82 -0.10 2.01 16 19 N -0.90 -26.50 13.95 55.43 0.77 -25.72 16 20 Si 0.87 21.30 24.84 -169.99 -4.22 17.08 16 21 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 22 H -0.30 -7.35 7.11 56.52 0.40 -6.95 16 23 H -0.26 -5.99 5.90 56.52 0.33 -5.66 16 24 C -0.21 -4.47 7.12 -26.73 -0.19 -4.66 16 25 C -0.17 -3.62 8.39 -26.73 -0.22 -3.84 16 26 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 1.10 7.47 -51.93 -0.39 0.71 16 29 H 0.07 1.15 8.14 -51.92 -0.42 0.73 16 30 H 0.03 0.47 8.12 -51.93 -0.42 0.05 16 31 H 0.09 1.94 7.70 -51.93 -0.40 1.54 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.06 1.08 6.43 -51.93 -0.33 0.75 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.98 4.81 -51.93 -0.25 0.73 16 38 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.02 0.36 8.10 -51.93 -0.42 -0.06 16 43 H 0.09 1.82 5.49 -51.93 -0.28 1.54 16 44 H 0.26 7.33 8.32 -40.82 -0.34 6.99 16 45 H 0.08 1.93 6.69 -51.93 -0.35 1.58 16 46 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 47 H 0.07 1.42 7.97 -51.93 -0.41 1.01 16 48 H 0.08 1.73 8.14 -51.93 -0.42 1.30 16 LS Contribution 357.02 15.07 5.38 5.38 Total: -1.00 -28.26 357.02 -8.27 -36.52 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -9.04 Total: 4.79 kcal Atomic # 6 Polarization: -25.17 SS G_CDS: -0.56 Total: -25.73 kcal Atomic # 7 Polarization: -32.96 SS G_CDS: 0.31 Total: -32.65 kcal Atomic # 8 Polarization: -5.26 SS G_CDS: -0.14 Total: -5.39 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.22 Total: 17.08 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -28.26 -8.27 -36.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307818356.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.648 kcal (2) G-P(sol) polarization free energy of solvation -28.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds