Wall clock time and date at job start Tue Mar 31 2020 05:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 N 1.46298 * 113.99772 * 2 1 4 4 C 1.46894 * 110.99943 * 113.52733 * 3 2 1 5 5 C 1.53002 * 109.47141 * 298.54483 * 4 3 2 6 6 H 1.09005 * 109.46689 * 54.56966 * 5 4 3 7 7 C 1.52994 * 109.47054 * 294.56676 * 5 4 3 8 8 C 1.53004 * 109.46866 * 179.97438 * 7 5 4 9 9 C 1.52995 * 109.47272 * 60.00329 * 8 7 5 10 10 C 1.53005 * 109.46790 * 299.99992 * 9 8 7 11 11 H 1.08996 * 109.47211 * 299.99224 * 10 9 8 12 12 C 1.53002 * 109.47054 * 179.97438 * 10 9 8 13 13 C 1.52995 * 109.47262 * 60.00081 * 10 9 8 14 14 C 1.46905 * 110.99951 * 237.47802 * 3 2 1 15 15 C 1.53000 * 109.46932 * 69.96184 * 14 3 2 16 16 C 1.50704 * 115.55255 * 297.28721 * 15 14 3 17 17 H 1.07995 * 120.00335 * 144.22626 * 16 15 14 18 18 C 1.37880 * 119.99570 * 324.22950 * 16 15 14 19 19 N 1.31508 * 120.00239 * 1.14793 * 18 16 15 20 20 Si 1.86803 * 119.99431 * 181.14234 * 18 16 15 21 21 H 1.48500 * 109.47551 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46701 * 120.00281 * 20 18 16 23 23 H 1.48501 * 109.47177 * 239.99875 * 20 18 16 24 24 C 1.52998 * 117.49874 * 151.61972 * 15 14 3 25 25 C 1.53000 * 117.50119 * 82.95972 * 15 14 3 26 26 H 1.09002 * 109.47372 * 64.75203 * 1 2 3 27 27 H 1.09003 * 109.47102 * 184.75087 * 1 2 3 28 28 H 1.09000 * 109.46832 * 304.74964 * 1 2 3 29 29 H 1.09007 * 109.47303 * 178.54932 * 4 3 2 30 30 H 1.09003 * 109.47347 * 58.54889 * 4 3 2 31 31 H 1.08995 * 109.47562 * 299.99802 * 7 5 4 32 32 H 1.09006 * 109.47346 * 60.00183 * 7 5 4 33 33 H 1.09005 * 109.46959 * 180.02562 * 8 7 5 34 34 H 1.08995 * 109.47281 * 299.99858 * 8 7 5 35 35 H 1.08992 * 109.47623 * 179.97438 * 9 8 7 36 36 H 1.09005 * 109.47389 * 59.99653 * 9 8 7 37 37 H 1.09005 * 109.46952 * 300.00177 * 12 10 9 38 38 H 1.09004 * 109.47166 * 59.99480 * 12 10 9 39 39 H 1.08996 * 109.47322 * 179.97438 * 12 10 9 40 40 H 1.08995 * 109.47346 * 60.00134 * 13 10 9 41 41 H 1.09002 * 109.47351 * 180.02562 * 13 10 9 42 42 H 1.08998 * 109.47270 * 189.96190 * 14 3 2 43 43 H 1.09001 * 109.46950 * 309.96150 * 14 3 2 44 44 H 0.97009 * 119.99707 * 185.01440 * 19 18 16 45 45 H 1.09004 * 117.49742 * 0.02562 * 24 15 14 46 46 H 1.09007 * 117.50213 * 145.02081 * 24 15 14 47 47 H 1.08996 * 117.50179 * 214.97747 * 25 15 14 48 48 H 1.09006 * 117.49768 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0240 1.3365 0.0000 4 6 2.7382 1.5948 1.2574 5 6 1.7532 1.5290 2.4263 6 1 1.2284 0.5738 2.4058 7 6 0.7409 2.6698 2.3050 8 6 -0.2445 2.6035 3.4735 9 6 0.5189 2.7373 4.7926 10 6 1.5312 1.5964 4.9139 11 1 1.0065 0.6413 4.8931 12 6 2.2951 1.7305 6.2328 13 6 2.5166 1.6627 3.7454 14 6 2.9117 1.5176 -1.1564 15 6 2.0753 1.5849 -2.4358 16 6 1.2877 0.3426 -2.7636 17 1 0.3117 0.4262 -3.2184 18 6 1.8131 -0.9009 -2.4827 19 7 2.9917 -1.0022 -1.9082 20 14 0.8506 -2.4415 -2.9182 21 1 -0.4366 -2.0585 -3.5518 22 1 1.6414 -3.2679 -3.8653 23 1 0.5823 -3.2229 -1.6842 24 6 2.6383 2.3936 -3.6061 25 6 1.4525 2.9334 -2.8026 26 1 -0.3634 0.4383 -0.9295 27 1 -0.3633 -1.0242 0.0851 28 1 -0.3633 0.5858 0.8444 29 1 3.1925 2.5850 1.2205 30 1 3.5157 0.8432 1.3946 31 1 1.2656 3.6249 2.3254 32 1 0.1967 2.5743 1.3653 33 1 -0.9660 3.4160 3.3869 34 1 -0.7693 1.6484 3.4526 35 1 -0.1831 2.6905 5.6251 36 1 1.0437 3.6924 4.8136 37 1 2.8199 2.6857 6.2532 38 1 1.5933 1.6837 7.0655 39 1 3.0160 0.9176 6.3194 40 1 3.0414 2.6178 3.7663 41 1 3.2376 0.8497 3.8315 42 1 3.4744 2.4440 -1.0410 43 1 3.6036 0.6776 -1.2184 44 1 3.3937 -1.8753 -1.7767 45 1 3.6048 2.8774 -3.4648 46 1 2.4387 2.0274 -4.6133 47 1 0.4734 2.9221 -3.2813 48 1 1.6384 3.7726 -2.1322 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001307818358.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:40 Heat of formation + Delta-G solvation = 9.451686 kcal Electronic energy + Delta-G solvation = -24319.469530 eV Core-core repulsion = 21183.471182 eV Total energy + Delta-G solvation = -3135.998348 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -38.88622 -36.98370 -35.20815 -33.21834 -31.95232 -31.91743 -30.48027 -26.35097 -25.98963 -25.28587 -24.79718 -22.23800 -21.74863 -21.00331 -19.86647 -19.57752 -18.77411 -16.08923 -15.49965 -15.01020 -14.95976 -14.47996 -14.36407 -14.02399 -13.83001 -13.46021 -13.26941 -13.20406 -12.74228 -12.40899 -12.30024 -12.01754 -11.84310 -11.59578 -11.33551 -11.23543 -11.18834 -10.85580 -10.81134 -10.62465 -10.51540 -10.38616 -10.31181 -10.06112 -9.98989 -9.81033 -9.73590 -9.23947 -8.77696 -8.67727 -8.45666 -7.89878 -7.30879 -5.73649 -3.86768 3.32611 3.42341 3.44384 3.96834 4.50101 4.76276 4.81552 4.93724 5.20946 5.28869 5.32604 5.49805 5.58293 5.63096 5.70204 5.72811 5.74069 5.81414 5.90385 5.98160 6.03072 6.08982 6.15196 6.20922 6.28590 6.36671 6.38821 6.44725 6.45761 6.47797 6.52232 6.60446 6.66649 6.78581 6.81218 6.83653 6.90475 7.01999 7.04986 7.11898 7.31332 7.43016 7.70483 8.13477 8.14694 8.46734 8.61861 9.06416 9.73772 11.17019 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.020676 B = 0.005369 C = 0.004910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.903108 B = 5213.416659 C = 5700.930922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.208 6.208 3 N -0.349 5.349 4 C 0.045 3.955 5 C -0.078 4.078 6 H 0.073 0.927 7 C -0.106 4.106 8 C -0.120 4.120 9 C -0.111 4.111 10 C -0.091 4.091 11 H 0.067 0.933 12 C -0.146 4.146 13 C -0.107 4.107 14 C 0.069 3.931 15 C 0.070 3.930 16 C -0.477 4.477 17 H 0.052 0.948 18 C 0.097 3.903 19 N -0.869 5.869 20 Si 0.880 3.120 21 H -0.275 1.275 22 H -0.288 1.288 23 H -0.284 1.284 24 C -0.212 4.212 25 C -0.206 4.206 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.019 0.981 29 H 0.071 0.929 30 H 0.034 0.966 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.058 0.942 37 H 0.052 0.948 38 H 0.050 0.950 39 H 0.052 0.948 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.033 0.967 43 H 0.116 0.884 44 H 0.254 0.746 45 H 0.060 0.940 46 H 0.074 0.926 47 H 0.069 0.931 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.961 5.665 12.413 13.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.213 6.213 3 N -0.116 5.116 4 C -0.084 4.084 5 C -0.097 4.097 6 H 0.092 0.908 7 C -0.144 4.144 8 C -0.157 4.157 9 C -0.149 4.149 10 C -0.110 4.110 11 H 0.085 0.915 12 C -0.203 4.203 13 C -0.145 4.145 14 C -0.059 4.059 15 C 0.070 3.930 16 C -0.514 4.514 17 H 0.070 0.930 18 C -0.106 4.106 19 N -0.506 5.506 20 Si 0.709 3.291 21 H -0.200 1.200 22 H -0.214 1.214 23 H -0.210 1.210 24 C -0.250 4.250 25 C -0.244 4.244 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.037 0.963 29 H 0.089 0.911 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.095 0.905 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.051 0.949 43 H 0.133 0.867 44 H 0.065 0.935 45 H 0.079 0.921 46 H 0.093 0.907 47 H 0.088 0.912 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.129 5.649 12.500 13.882 hybrid contribution 0.066 -1.185 -0.247 1.212 sum -2.063 4.465 12.254 13.204 Atomic orbital electron populations 1.22466 0.84279 0.98882 0.99788 1.90916 1.17494 1.16551 1.96329 1.67420 1.33277 1.09783 1.01071 1.22359 0.95279 0.99735 0.91003 1.21057 0.96170 0.99600 0.92840 0.90846 1.21508 0.96787 0.97763 0.98322 1.21556 0.97957 1.01354 0.94880 1.21578 0.97578 0.98358 0.97364 1.21112 0.96327 0.98994 0.94521 0.91457 1.21833 1.00004 1.01540 0.96970 1.21611 0.97457 1.01439 0.93994 1.22264 0.95354 0.99941 0.88312 1.18813 0.95428 0.88869 0.89928 1.20327 1.02387 0.88954 1.39703 0.92969 1.24661 0.94759 0.98093 0.93108 1.69579 1.16247 1.22878 1.41929 0.86751 0.80378 0.84079 0.77893 1.19991 1.21414 1.20990 1.22992 0.95284 1.08335 0.98436 1.22789 0.96152 1.00522 1.04918 0.92740 0.92520 0.96258 0.91117 0.94748 0.92862 0.90501 0.92561 0.92334 0.92758 0.92314 0.92900 0.93104 0.92882 0.92349 0.92376 0.94870 0.86696 0.93489 0.92114 0.90702 0.91236 0.91730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.92 10.29 101.05 1.04 1.96 16 2 O -0.21 -4.86 6.76 -13.92 -0.09 -4.96 16 3 N -0.35 -7.46 4.18 -113.77 -0.48 -7.94 16 4 C 0.05 0.82 4.66 -3.83 -0.02 0.80 16 5 C -0.08 -1.19 1.88 -90.62 -0.17 -1.36 16 6 H 0.07 1.27 6.79 -51.93 -0.35 0.92 16 7 C -0.11 -1.53 4.84 -26.73 -0.13 -1.66 16 8 C -0.12 -1.46 5.92 -26.73 -0.16 -1.62 16 9 C -0.11 -1.21 5.20 -26.73 -0.14 -1.35 16 10 C -0.09 -1.03 2.72 -90.62 -0.25 -1.28 16 11 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 12 C -0.15 -1.41 9.19 37.16 0.34 -1.07 16 13 C -0.11 -1.38 4.48 -26.73 -0.12 -1.49 16 14 C 0.07 1.61 4.77 -3.82 -0.02 1.59 16 15 C 0.07 1.72 2.09 -155.66 -0.33 1.40 16 16 C -0.48 -12.63 6.30 -34.44 -0.22 -12.85 16 17 H 0.05 1.42 7.81 -52.49 -0.41 1.01 16 18 C 0.10 2.56 3.59 -17.82 -0.06 2.50 16 19 N -0.87 -23.61 9.29 55.43 0.52 -23.10 16 20 Si 0.88 21.14 29.54 -169.99 -5.02 16.12 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 24 C -0.21 -4.83 9.94 -26.70 -0.27 -5.09 16 25 C -0.21 -4.57 9.96 -26.69 -0.27 -4.84 16 26 H 0.05 1.23 6.65 -51.93 -0.35 0.88 16 27 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 28 H 0.02 0.35 6.19 -51.93 -0.32 0.03 16 29 H 0.07 1.19 7.99 -51.93 -0.41 0.77 16 30 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.08 1.27 6.85 -51.93 -0.36 0.92 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.03 0.73 7.88 -51.93 -0.41 0.32 16 43 H 0.12 3.04 5.36 -51.93 -0.28 2.76 16 44 H 0.25 6.79 8.32 -40.82 -0.34 6.45 16 45 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 46 H 0.07 1.72 8.14 -51.93 -0.42 1.30 16 47 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 48 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 359.18 15.07 5.41 5.41 Total: -1.00 -26.75 359.18 -9.63 -36.38 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -9.21 Total: 2.45 kcal Atomic # 6 Polarization: -23.61 SS G_CDS: -0.76 Total: -24.37 kcal Atomic # 7 Polarization: -31.08 SS G_CDS: 0.04 Total: -31.04 kcal Atomic # 8 Polarization: -4.86 SS G_CDS: -0.09 Total: -4.96 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -26.75 -9.63 -36.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307818358.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.834 kcal (2) G-P(sol) polarization free energy of solvation -26.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds