Wall clock time and date at job start Tue Mar 31 2020 05:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 N 1.46305 * 113.99871 * 2 1 4 4 C 1.46894 * 111.00195 * 250.84167 * 3 2 1 5 5 C 1.52995 * 109.47332 * 173.43000 * 4 3 2 6 6 H 1.09000 * 109.46965 * 56.82730 * 5 4 3 7 7 C 1.52998 * 109.47179 * 296.82920 * 5 4 3 8 8 C 1.53007 * 109.46985 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47054 * 59.99882 * 8 7 5 10 10 C 1.52998 * 109.47320 * 299.99912 * 9 8 7 11 11 H 1.08993 * 109.47493 * 180.02562 * 10 9 8 12 12 C 1.53003 * 109.47027 * 300.00191 * 10 9 8 13 13 C 1.52999 * 109.47163 * 176.82617 * 5 4 3 14 14 C 1.46900 * 110.99750 * 126.88976 * 3 2 1 15 15 C 1.53009 * 109.47080 * 294.70600 * 14 3 2 16 16 C 1.50700 * 115.54812 * 301.67417 * 15 14 3 17 17 H 1.08003 * 119.99690 * 143.91660 * 16 15 14 18 18 C 1.37877 * 120.00016 * 323.91280 * 16 15 14 19 19 N 1.31510 * 119.99997 * 344.25759 * 18 16 15 20 20 Si 1.86800 * 119.99733 * 164.25638 * 18 16 15 21 21 H 1.48507 * 109.47291 * 5.02995 * 20 18 16 22 22 H 1.48500 * 109.47233 * 125.03226 * 20 18 16 23 23 H 1.48499 * 109.47341 * 245.03289 * 20 18 16 24 24 C 1.52999 * 117.49738 * 156.00540 * 15 14 3 25 25 C 1.53001 * 117.49849 * 87.34628 * 15 14 3 26 26 H 1.09003 * 109.47124 * 175.00739 * 1 2 3 27 27 H 1.09004 * 109.47471 * 295.00722 * 1 2 3 28 28 H 1.09003 * 109.47594 * 55.00503 * 1 2 3 29 29 H 1.08999 * 109.47409 * 293.43657 * 4 3 2 30 30 H 1.09001 * 109.47181 * 53.43259 * 4 3 2 31 31 H 1.09000 * 109.47017 * 299.99778 * 7 5 4 32 32 H 1.09001 * 109.47027 * 59.99940 * 7 5 4 33 33 H 1.08996 * 109.46685 * 180.02562 * 8 7 5 34 34 H 1.09000 * 109.47267 * 299.99876 * 8 7 5 35 35 H 1.09000 * 109.47088 * 59.99884 * 9 8 7 36 36 H 1.09002 * 109.46785 * 179.97438 * 9 8 7 37 37 H 1.09003 * 109.46998 * 59.99778 * 12 10 9 38 38 H 1.09000 * 109.47057 * 179.97438 * 12 10 9 39 39 H 1.08993 * 109.46999 * 299.99936 * 12 10 9 40 40 H 1.09001 * 109.47021 * 299.99604 * 13 5 4 41 41 H 1.09000 * 109.47088 * 60.00188 * 13 5 4 42 42 H 1.09003 * 109.47181 * 54.70441 * 14 3 2 43 43 H 1.08995 * 109.47516 * 174.70770 * 14 3 2 44 44 H 0.97006 * 119.99848 * 183.65673 * 19 18 16 45 45 H 1.09001 * 117.49961 * 359.97438 * 24 15 14 46 46 H 1.09004 * 117.49873 * 145.02041 * 24 15 14 47 47 H 1.08997 * 117.50070 * 214.98013 * 25 15 14 48 48 H 1.08999 * 117.49605 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0240 1.3366 0.0000 4 6 2.6493 1.6345 -1.2954 5 6 3.1141 3.0920 -1.3142 6 1 3.7952 3.2669 -0.4814 7 6 1.9014 4.0158 -1.1839 8 6 2.3664 5.4734 -1.2021 9 6 3.0881 5.7620 -2.5199 10 6 4.3008 4.8383 -2.6502 11 1 4.8152 5.0442 -3.5887 12 6 5.2566 5.0834 -1.4808 13 6 3.8355 3.3803 -2.6323 14 6 2.9902 1.4826 1.0969 15 6 2.2576 1.3926 2.4372 16 6 1.1668 2.4101 2.6512 17 1 0.2701 2.1358 3.1871 18 6 1.3135 3.6912 2.1630 19 7 2.4994 4.1216 1.7918 20 14 -0.1723 4.8153 2.0287 21 1 -1.3572 4.1425 2.6193 22 1 0.0954 6.0792 2.7609 23 1 -0.4365 5.1180 0.5991 24 6 3.0709 0.9611 3.6592 25 6 2.0533 0.0007 3.0385 26 1 -0.3633 -1.0238 -0.0894 27 1 -0.3634 0.4344 0.9313 28 1 -0.3634 0.5894 -0.8419 29 1 3.5063 0.9778 -1.4448 30 1 1.9250 1.4738 -2.0940 31 1 1.2203 3.8409 -2.0167 32 1 1.3875 3.8104 -0.2448 33 1 1.5025 6.1314 -1.1088 34 1 3.0473 5.6480 -0.3690 35 1 2.4072 5.5874 -3.3529 36 1 3.4189 6.8006 -2.5330 37 1 4.7423 4.8777 -0.5420 38 1 6.1203 4.4249 -1.5735 39 1 5.5877 6.1217 -1.4938 40 1 4.6995 2.7222 -2.7250 41 1 3.1544 3.2054 -3.4651 42 1 3.7332 0.6875 1.0349 43 1 3.4859 2.4501 1.0181 44 1 2.6124 5.0393 1.4984 45 1 4.1277 0.7409 3.5082 46 1 2.8167 1.4129 4.6181 47 1 1.1300 -0.1791 3.5893 48 1 2.4404 -0.8510 2.4791 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001307818359.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:42 Heat of formation + Delta-G solvation = 11.965479 kcal Electronic energy + Delta-G solvation = -25107.586539 eV Core-core repulsion = 21971.697197 eV Total energy + Delta-G solvation = -3135.889342 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.01176 -37.04892 -35.39368 -33.51784 -32.15046 -30.98682 -30.09160 -26.40083 -26.06733 -25.49779 -25.10528 -22.54788 -21.74585 -21.01406 -19.92830 -18.87725 -18.21745 -16.40571 -15.49930 -15.19795 -14.67419 -14.56036 -14.42800 -13.96662 -13.71896 -13.52651 -13.34947 -13.08451 -12.85762 -12.43451 -12.20377 -11.84015 -11.70654 -11.34766 -11.28847 -11.15948 -11.01974 -10.87367 -10.62104 -10.59334 -10.58015 -10.36923 -10.29444 -9.97719 -9.60343 -9.46714 -9.37079 -9.26330 -9.03907 -8.87645 -8.51317 -7.86376 -7.49722 -5.96471 -3.89836 3.31313 3.40683 3.45275 3.59741 4.45868 5.06147 5.09985 5.12811 5.17013 5.49936 5.65815 5.70798 5.76519 5.81669 5.84572 5.97058 6.02179 6.05406 6.07465 6.16444 6.19816 6.23980 6.25825 6.32033 6.35632 6.38836 6.41127 6.43277 6.48139 6.66301 6.70999 6.73694 6.77299 6.81303 6.85446 6.89676 6.93064 7.02087 7.15076 7.22684 7.43464 7.45100 7.60939 7.98614 8.03359 8.09848 8.58619 9.00851 9.65559 11.07653 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.014914 B = 0.008266 C = 0.006947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.917978 B = 3386.456009 C = 4029.829183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 O -0.280 6.280 3 N -0.322 5.322 4 C 0.045 3.955 5 C -0.075 4.075 6 H 0.094 0.906 7 C -0.109 4.109 8 C -0.121 4.121 9 C -0.112 4.112 10 C -0.085 4.085 11 H 0.058 0.942 12 C -0.154 4.154 13 C -0.108 4.108 14 C 0.082 3.918 15 C 0.070 3.930 16 C -0.470 4.470 17 H 0.054 0.946 18 C 0.090 3.910 19 N -0.872 5.872 20 Si 0.871 3.129 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.275 1.275 24 C -0.208 4.208 25 C -0.204 4.204 26 H 0.065 0.935 27 H 0.052 0.948 28 H 0.029 0.971 29 H 0.024 0.976 30 H 0.063 0.937 31 H 0.035 0.965 32 H 0.104 0.896 33 H 0.046 0.954 34 H 0.076 0.924 35 H 0.052 0.948 36 H 0.051 0.949 37 H 0.077 0.923 38 H 0.047 0.953 39 H 0.046 0.954 40 H 0.054 0.946 41 H 0.054 0.946 42 H -0.002 1.002 43 H 0.140 0.860 44 H 0.260 0.740 45 H 0.059 0.941 46 H 0.076 0.924 47 H 0.069 0.931 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.200 0.694 -8.304 8.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.283 6.283 3 N -0.091 5.091 4 C -0.084 4.084 5 C -0.093 4.093 6 H 0.112 0.888 7 C -0.146 4.146 8 C -0.159 4.159 9 C -0.150 4.150 10 C -0.104 4.104 11 H 0.076 0.924 12 C -0.211 4.211 13 C -0.146 4.146 14 C -0.045 4.045 15 C 0.070 3.930 16 C -0.507 4.507 17 H 0.072 0.928 18 C -0.112 4.112 19 N -0.510 5.510 20 Si 0.699 3.301 21 H -0.202 1.202 22 H -0.216 1.216 23 H -0.201 1.201 24 C -0.247 4.247 25 C -0.241 4.241 26 H 0.083 0.917 27 H 0.070 0.930 28 H 0.048 0.952 29 H 0.042 0.958 30 H 0.082 0.918 31 H 0.054 0.946 32 H 0.123 0.877 33 H 0.065 0.935 34 H 0.094 0.906 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.096 0.904 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.016 0.984 43 H 0.157 0.843 44 H 0.071 0.929 45 H 0.078 0.922 46 H 0.095 0.905 47 H 0.088 0.912 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.985 0.961 -8.356 8.642 hybrid contribution -0.301 0.060 -0.258 0.401 sum 1.684 1.021 -8.613 8.835 Atomic orbital electron populations 1.22359 0.82147 0.99280 1.00680 1.90533 1.19745 1.21186 1.96798 1.67805 1.33851 1.05310 1.02164 1.22435 0.97051 0.96188 0.92742 1.21162 0.98121 0.92547 0.97501 0.88772 1.21603 0.96694 0.92777 1.03556 1.21602 0.99564 0.97468 0.97222 1.21570 0.96759 0.98168 0.98467 1.21018 0.95955 0.95233 0.98148 0.92369 1.21980 0.98805 1.00404 0.99947 1.21618 0.99370 0.95654 0.98002 1.22292 0.90875 1.01567 0.89723 1.18758 0.95555 0.90645 0.88071 1.20332 1.01369 0.94380 1.34633 0.92823 1.24634 0.94923 0.97219 0.94412 1.69806 1.20794 1.15977 1.44451 0.86940 0.84360 0.80524 0.78297 1.20165 1.21596 1.20069 1.22989 0.94429 1.06449 1.00793 1.22803 0.99743 0.95185 1.06382 0.91652 0.92981 0.95228 0.95763 0.91813 0.94583 0.87731 0.93504 0.90565 0.92885 0.92985 0.90391 0.93409 0.93499 0.92764 0.92701 0.98365 0.84326 0.92854 0.92226 0.90548 0.91242 0.91694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.99 11.51 101.05 1.16 2.16 16 2 O -0.28 -6.01 10.25 -13.93 -0.14 -6.16 16 3 N -0.32 -6.92 3.95 -113.78 -0.45 -7.37 16 4 C 0.04 0.84 4.90 -3.83 -0.02 0.82 16 5 C -0.07 -1.30 1.75 -90.62 -0.16 -1.46 16 6 H 0.09 1.82 4.41 -51.93 -0.23 1.59 16 7 C -0.11 -2.03 4.59 -26.73 -0.12 -2.15 16 8 C -0.12 -2.05 5.46 -26.73 -0.15 -2.19 16 9 C -0.11 -1.58 5.45 -26.73 -0.15 -1.73 16 10 C -0.09 -1.15 3.20 -90.59 -0.29 -1.44 16 11 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 12 C -0.15 -2.14 8.50 37.16 0.32 -1.83 16 13 C -0.11 -1.57 4.74 -26.70 -0.13 -1.70 16 14 C 0.08 1.89 4.36 -3.82 -0.02 1.88 16 15 C 0.07 1.71 1.75 -155.66 -0.27 1.43 16 16 C -0.47 -12.20 8.78 -34.44 -0.30 -12.50 16 17 H 0.05 1.45 7.86 -52.48 -0.41 1.04 16 18 C 0.09 2.25 4.00 -17.82 -0.07 2.18 16 19 N -0.87 -21.12 9.57 55.43 0.53 -20.59 16 20 Si 0.87 20.12 28.44 -169.99 -4.83 15.28 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 24 C -0.21 -4.78 9.95 -26.69 -0.27 -5.05 16 25 C -0.20 -4.61 9.50 -26.69 -0.25 -4.86 16 26 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 31 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.10 2.29 3.91 -51.93 -0.20 2.09 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.08 1.36 5.06 -51.93 -0.26 1.10 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 1.26 4.81 -51.93 -0.25 1.01 16 38 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.00 -0.04 8.11 -51.93 -0.42 -0.46 16 43 H 0.14 3.30 3.66 -51.93 -0.19 3.11 16 44 H 0.26 6.06 6.72 -40.82 -0.27 5.79 16 45 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 46 H 0.08 1.77 8.14 -51.93 -0.42 1.34 16 47 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 48 H 0.06 1.44 8.14 -51.93 -0.42 1.01 16 LS Contribution 353.07 15.07 5.32 5.32 Total: -1.00 -25.16 353.07 -8.94 -34.10 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -8.65 Total: 5.86 kcal Atomic # 6 Polarization: -25.74 SS G_CDS: -0.71 Total: -26.45 kcal Atomic # 7 Polarization: -28.04 SS G_CDS: 0.08 Total: -27.96 kcal Atomic # 8 Polarization: -6.01 SS G_CDS: -0.14 Total: -6.16 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -4.83 Total: 15.28 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -25.16 -8.94 -34.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307818359.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.064 kcal (2) G-P(sol) polarization free energy of solvation -25.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds