Wall clock time and date at job start Tue Mar 31 2020 06:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47067 * 2 1 4 4 C 1.50699 * 109.47278 * 239.99639 * 2 1 3 5 5 H 1.08000 * 120.00381 * 240.00511 * 4 2 1 6 6 C 1.37880 * 119.99747 * 59.99768 * 4 2 1 7 7 N 1.31510 * 120.00240 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99958 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47325 * 90.00166 * 8 6 4 10 10 H 1.48505 * 109.46794 * 210.00323 * 8 6 4 11 11 H 1.48501 * 109.46781 * 329.99996 * 8 6 4 12 12 N 1.46507 * 109.47029 * 119.99952 * 2 1 3 13 13 C 1.46497 * 119.99994 * 64.22327 * 12 2 1 14 14 C 1.34779 * 119.99576 * 244.21665 * 12 2 1 15 15 O 1.21283 * 119.99454 * 175.10377 * 14 12 2 16 16 C 1.50693 * 120.00113 * 355.10971 * 14 12 2 17 17 C 1.53001 * 109.47116 * 62.47363 * 16 14 12 18 18 C 1.52996 * 109.47326 * 302.47046 * 16 14 12 19 19 C 1.53002 * 109.46972 * 182.46488 * 16 14 12 20 20 C 1.53005 * 109.47140 * 179.97438 * 19 16 14 21 21 C 1.53005 * 109.46979 * 180.02562 * 20 19 16 22 22 C 1.53000 * 109.47186 * 300.00077 * 21 20 19 23 23 C 1.53008 * 109.46713 * 60.00166 * 22 21 20 24 24 C 1.52996 * 109.47550 * 300.00420 * 19 16 14 25 25 H 1.09005 * 109.47305 * 300.00239 * 1 2 3 26 26 H 1.09002 * 109.47246 * 60.00057 * 1 2 3 27 27 H 1.09003 * 109.47688 * 180.02562 * 1 2 3 28 28 H 0.97003 * 120.00680 * 179.97438 * 7 6 4 29 29 H 1.09002 * 109.46873 * 274.94946 * 13 12 2 30 30 H 1.08993 * 109.47411 * 34.94972 * 13 12 2 31 31 H 1.08994 * 109.47224 * 154.95533 * 13 12 2 32 32 H 1.09007 * 109.46881 * 175.29287 * 17 16 14 33 33 H 1.09006 * 109.47029 * 295.28450 * 17 16 14 34 34 H 1.08997 * 109.47550 * 55.29127 * 17 16 14 35 35 H 1.09004 * 109.46776 * 304.60115 * 18 16 14 36 36 H 1.08996 * 109.47515 * 64.60703 * 18 16 14 37 37 H 1.09004 * 109.47234 * 184.60908 * 18 16 14 38 38 H 1.09004 * 109.46868 * 60.00277 * 19 16 14 39 39 H 1.09004 * 109.46855 * 60.00463 * 20 19 16 40 40 H 1.08999 * 109.47202 * 300.00569 * 20 19 16 41 41 H 1.09003 * 109.46773 * 60.00631 * 21 20 19 42 42 H 1.08998 * 109.46568 * 180.02562 * 21 20 19 43 43 H 1.08996 * 109.46732 * 180.02562 * 22 21 20 44 44 H 1.08994 * 109.47223 * 300.00260 * 22 21 20 45 45 H 1.08999 * 109.46690 * 179.97438 * 23 22 21 46 46 H 1.08994 * 109.47199 * 60.00079 * 23 22 21 47 47 H 1.09004 * 109.46918 * 299.99827 * 24 19 16 48 48 H 1.08998 * 109.47102 * 59.99654 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8300 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 1.3427 -2.1619 -4.4118 10 1 2.4865 -0.1415 -5.1123 11 1 3.6293 -1.7584 -3.7121 12 7 2.0183 -0.6906 1.1962 13 6 1.7423 -2.1173 1.3824 14 6 2.7216 -0.0134 2.1254 15 8 3.0494 -0.5616 3.1564 16 6 3.1004 1.4249 1.8833 17 6 1.8325 2.2721 1.7579 18 6 3.9125 1.5278 0.5907 19 6 3.9407 1.9352 3.0556 20 6 4.3259 3.3954 2.8095 21 6 5.1668 3.9055 3.9816 22 6 4.3549 3.8031 5.2744 23 6 3.9697 2.3429 5.5204 24 6 3.1286 1.8323 4.3482 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 0.7094 1.1616 -3.4844 29 1 0.7608 -2.2407 1.8402 30 1 1.7578 -2.6196 0.4152 31 1 2.5027 -2.5530 2.0303 32 1 2.1057 3.3234 1.6664 33 1 1.2752 1.9633 0.8734 34 1 1.2136 2.1333 2.6442 35 1 4.7731 0.8612 0.6483 36 1 3.2872 1.2418 -0.2550 37 1 4.2559 2.5538 0.4580 38 1 4.8440 1.3317 3.1450 39 1 3.4229 3.9992 2.7198 40 1 4.9047 3.4682 1.8887 41 1 6.0699 3.3016 4.0708 42 1 5.4408 4.9458 3.8065 43 1 4.9538 4.1669 6.1092 44 1 3.4519 4.4069 5.1851 45 1 3.3917 2.2699 6.4416 46 1 4.8727 1.7390 5.6097 47 1 2.2254 2.4359 4.2588 48 1 2.8546 0.7920 4.5233 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339162122.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:25 Heat of formation + Delta-G solvation = -45.642379 kcal Electronic energy + Delta-G solvation = -24713.241967 eV Core-core repulsion = 21574.854561 eV Total energy + Delta-G solvation = -3138.387406 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -40.37029 -37.89137 -35.72620 -34.40029 -32.63976 -30.51218 -29.43105 -28.97533 -26.89031 -26.11977 -25.24662 -23.62756 -22.21884 -21.59812 -20.34628 -19.08423 -17.87311 -16.70364 -15.74698 -15.39296 -14.93697 -14.59578 -14.43358 -13.97431 -13.94238 -13.80419 -13.28278 -13.04428 -12.75511 -12.39651 -12.12306 -11.96923 -11.81031 -11.61318 -11.49896 -11.37744 -11.16722 -11.11492 -10.97732 -10.87049 -10.69857 -10.68149 -10.55232 -10.40824 -10.21100 -10.02134 -9.89579 -9.78841 -9.57708 -9.05569 -8.60454 -8.39051 -7.54616 -6.19464 -4.26761 3.20504 3.28454 3.31284 3.48068 4.04490 4.31604 4.88296 4.95973 5.00568 5.11844 5.25867 5.36515 5.44592 5.58513 5.68938 5.75419 5.79422 5.82001 5.86889 5.89461 6.06846 6.17324 6.21203 6.24325 6.27543 6.33061 6.35306 6.38551 6.42971 6.46573 6.51493 6.54099 6.56981 6.61891 6.71584 6.77749 6.85758 6.92618 6.94509 7.13012 7.29383 7.48467 7.69525 7.86137 8.12675 8.52993 8.76850 9.10351 9.41300 10.84996 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.024664 B = 0.005317 C = 0.004905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.002078 B = 5265.203841 C = 5707.027387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.228 3.772 3 H 0.090 0.910 4 C -0.528 4.528 5 H 0.061 0.939 6 C 0.068 3.932 7 N -0.888 5.888 8 Si 0.895 3.105 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.589 5.589 13 C 0.092 3.908 14 C 0.519 3.481 15 O -0.572 6.572 16 C -0.068 4.068 17 C -0.163 4.163 18 C -0.164 4.164 19 C -0.055 4.055 20 C -0.120 4.120 21 C -0.117 4.117 22 C -0.119 4.119 23 C -0.116 4.116 24 C -0.128 4.128 25 H 0.013 0.987 26 H 0.094 0.906 27 H 0.030 0.970 28 H 0.264 0.736 29 H 0.038 0.962 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.091 0.909 34 H 0.052 0.948 35 H 0.049 0.951 36 H 0.108 0.892 37 H 0.057 0.943 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.058 0.942 42 H 0.056 0.944 43 H 0.053 0.947 44 H 0.058 0.942 45 H 0.053 0.947 46 H 0.057 0.943 47 H 0.053 0.947 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.628 5.250 8.772 10.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.128 3.872 3 H 0.107 0.893 4 C -0.566 4.566 5 H 0.079 0.921 6 C -0.135 4.135 7 N -0.526 5.526 8 Si 0.723 3.277 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.318 5.318 13 C -0.052 4.052 14 C 0.307 3.693 15 O -0.454 6.454 16 C -0.071 4.071 17 C -0.220 4.220 18 C -0.221 4.221 19 C -0.073 4.073 20 C -0.157 4.157 21 C -0.154 4.154 22 C -0.156 4.156 23 C -0.153 4.153 24 C -0.165 4.165 25 H 0.032 0.968 26 H 0.112 0.888 27 H 0.049 0.951 28 H 0.074 0.926 29 H 0.056 0.944 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.110 0.890 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.126 0.874 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.077 0.923 45 H 0.072 0.928 46 H 0.076 0.924 47 H 0.072 0.928 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.691 5.068 9.123 11.070 hybrid contribution 0.207 -0.541 -0.993 1.150 sum 3.898 4.527 8.130 10.089 Atomic orbital electron populations 1.22178 0.98476 0.99881 1.00703 1.19794 0.91299 0.95243 0.80898 0.89317 1.21347 1.31769 1.13333 0.90155 0.92056 1.24855 0.94784 0.94958 0.98897 1.69840 1.36216 1.22561 1.23980 0.86538 0.79329 0.79450 0.82417 1.20625 1.21086 1.19860 1.48194 1.52030 1.09487 1.22109 1.21399 0.99412 0.82671 1.01691 1.20482 0.77519 0.88464 0.82854 1.90487 1.57375 1.70597 1.26983 1.20593 0.97038 0.92428 0.97048 1.22417 0.96508 0.99473 1.03577 1.22369 1.00698 1.01386 0.97641 1.20850 0.98025 0.95076 0.93395 1.21759 0.99899 0.96269 0.97751 1.21515 0.98545 1.00264 0.95124 1.21547 0.99695 0.97236 0.97142 1.21511 0.99988 0.95556 0.98256 1.21918 0.97566 1.03550 0.93446 0.96843 0.88799 0.95056 0.92554 0.94367 0.90796 0.92272 0.92018 0.89027 0.92891 0.93198 0.87401 0.92450 0.91375 0.91675 0.91705 0.92322 0.92565 0.92848 0.92331 0.92780 0.92407 0.92812 0.88849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.42 8.48 37.15 0.31 -3.10 16 2 C 0.23 5.10 1.03 -69.08 -0.07 5.02 16 3 H 0.09 2.00 2.15 -51.93 -0.11 1.89 16 4 C -0.53 -12.98 7.36 -34.44 -0.25 -13.24 16 5 H 0.06 1.55 6.96 -52.49 -0.37 1.18 16 6 C 0.07 1.69 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -22.61 11.32 55.43 0.63 -21.98 16 8 Si 0.89 19.82 29.54 -169.99 -5.02 14.80 16 9 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 10 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 12 N -0.59 -12.51 2.75 -175.27 -0.48 -12.99 16 13 C 0.09 1.80 9.64 59.85 0.58 2.38 16 14 C 0.52 10.72 6.21 -10.99 -0.07 10.65 16 15 O -0.57 -12.68 13.12 5.55 0.07 -12.60 16 16 C -0.07 -1.21 0.30 -155.66 -0.05 -1.25 16 17 C -0.16 -2.76 7.40 37.16 0.28 -2.48 16 18 C -0.16 -2.97 7.90 37.16 0.29 -2.68 16 19 C -0.05 -0.86 1.20 -90.62 -0.11 -0.97 16 20 C -0.12 -1.58 4.51 -26.73 -0.12 -1.70 16 21 C -0.12 -1.36 5.92 -26.73 -0.16 -1.52 16 22 C -0.12 -1.36 5.92 -26.73 -0.16 -1.51 16 23 C -0.12 -1.51 5.92 -26.71 -0.16 -1.66 16 24 C -0.13 -1.97 4.54 -26.71 -0.12 -2.10 16 25 H 0.01 0.26 7.80 -51.93 -0.40 -0.14 16 26 H 0.09 2.26 6.07 -51.93 -0.32 1.94 16 27 H 0.03 0.68 7.78 -51.93 -0.40 0.28 16 28 H 0.26 6.50 8.31 -40.82 -0.34 6.16 16 29 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 1.46 6.66 -51.93 -0.35 1.11 16 31 H 0.06 1.14 7.35 -51.93 -0.38 0.76 16 32 H 0.06 0.92 6.19 -51.93 -0.32 0.60 16 33 H 0.09 1.74 3.98 -51.93 -0.21 1.54 16 34 H 0.05 0.87 6.69 -51.93 -0.35 0.53 16 35 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.11 2.27 4.28 -51.93 -0.22 2.05 16 37 H 0.06 0.90 6.19 -51.93 -0.32 0.58 16 38 H 0.07 1.17 8.12 -51.93 -0.42 0.74 16 39 H 0.06 0.85 6.33 -51.93 -0.33 0.52 16 40 H 0.06 0.85 6.33 -51.93 -0.33 0.52 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.05 0.81 6.54 -51.93 -0.34 0.47 16 48 H 0.09 1.71 5.42 -51.93 -0.28 1.43 16 LS Contribution 337.97 15.07 5.09 5.09 Total: -1.00 -25.84 337.97 -7.57 -33.42 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -7.96 Total: 6.83 kcal Atomic # 6 Polarization: -12.66 SS G_CDS: 0.10 Total: -12.56 kcal Atomic # 7 Polarization: -35.12 SS G_CDS: 0.15 Total: -34.97 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: 0.07 Total: -12.60 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -25.84 -7.57 -33.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339162122.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.227 kcal (2) G-P(sol) polarization free energy of solvation -25.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds