Wall clock time and date at job start Tue Mar 31 2020 06:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46937 * 2 1 4 4 C 1.50700 * 109.46841 * 119.99331 * 2 1 3 5 5 H 1.08000 * 120.00113 * 120.00229 * 4 2 1 6 6 C 1.37875 * 120.00234 * 300.00562 * 4 2 1 7 7 N 1.31516 * 120.00183 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00277 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47335 * 89.99688 * 8 6 4 10 10 H 1.48497 * 109.47627 * 209.99817 * 8 6 4 11 11 H 1.48507 * 109.46994 * 330.00156 * 8 6 4 12 12 N 1.46493 * 109.47769 * 239.99528 * 2 1 3 13 13 C 1.46510 * 119.99860 * 302.26318 * 12 2 1 14 14 C 1.34771 * 120.00485 * 122.25803 * 12 2 1 15 15 O 1.21271 * 120.00481 * 175.42388 * 14 12 2 16 16 C 1.50709 * 119.99608 * 355.42069 * 14 12 2 17 17 C 1.52999 * 109.47026 * 300.77832 * 16 14 12 18 18 C 1.52997 * 109.46805 * 60.78069 * 16 14 12 19 19 C 1.53002 * 109.46843 * 180.77928 * 16 14 12 20 20 C 1.52999 * 109.46857 * 299.99772 * 19 16 14 21 21 C 1.53001 * 109.46735 * 180.02562 * 20 19 16 22 22 C 1.53000 * 109.47251 * 60.00264 * 21 20 19 23 23 C 1.52999 * 109.47035 * 299.99552 * 22 21 20 24 24 C 1.53000 * 109.46886 * 180.02562 * 19 16 14 25 25 H 1.09000 * 109.46362 * 60.00613 * 1 2 3 26 26 H 1.09002 * 109.46937 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.47296 * 300.00332 * 1 2 3 28 28 H 0.96997 * 120.00297 * 180.02562 * 7 6 4 29 29 H 1.09001 * 109.46549 * 274.44620 * 13 12 2 30 30 H 1.08995 * 109.47186 * 34.44805 * 13 12 2 31 31 H 1.08996 * 109.47129 * 154.44578 * 13 12 2 32 32 H 1.09001 * 109.47024 * 51.49897 * 17 16 14 33 33 H 1.09004 * 109.47112 * 171.49833 * 17 16 14 34 34 H 1.09001 * 109.47339 * 291.49312 * 17 16 14 35 35 H 1.08999 * 109.47842 * 79.66776 * 18 16 14 36 36 H 1.09004 * 109.46964 * 199.66594 * 18 16 14 37 37 H 1.09002 * 109.47511 * 319.66147 * 18 16 14 38 38 H 1.08994 * 109.47253 * 60.00478 * 19 16 14 39 39 H 1.09001 * 109.47452 * 300.00130 * 20 19 16 40 40 H 1.09003 * 109.47159 * 60.00731 * 20 19 16 41 41 H 1.09006 * 109.47376 * 300.00240 * 21 20 19 42 42 H 1.09004 * 109.47302 * 180.02562 * 21 20 19 43 43 H 1.09001 * 109.46878 * 180.02562 * 22 21 20 44 44 H 1.08994 * 109.46936 * 60.00172 * 22 21 20 45 45 H 1.09001 * 109.47452 * 300.00374 * 23 22 21 46 46 H 1.09003 * 109.47159 * 179.97438 * 23 22 21 47 47 H 1.09004 * 109.47251 * 300.00305 * 24 19 16 48 48 H 1.09006 * 109.46950 * 59.99641 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1316 6 6 1.6991 -0.2392 2.4828 7 7 0.9434 0.8304 2.6034 8 14 2.3211 -1.1200 4.0081 9 1 3.6294 -0.5456 4.4126 10 1 1.3428 -0.9489 5.1121 11 1 2.4857 -2.5660 3.7122 12 7 2.0185 -0.6906 -1.1960 13 6 1.6242 -2.0781 -1.4531 14 6 2.8305 -0.0498 -2.0599 15 8 3.3015 -0.6457 -3.0053 16 6 3.1531 1.4075 -1.8512 17 6 1.8587 2.2231 -1.8632 18 6 3.8561 1.5862 -0.5041 19 6 4.0719 1.8923 -2.9744 20 6 5.3663 1.0766 -2.9623 21 6 6.2854 1.5620 -4.0851 22 6 6.6128 3.0413 -3.8726 23 6 5.3185 3.8570 -3.8847 24 6 4.3999 3.3716 -2.7621 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 0.7093 1.1620 3.4843 29 1 2.3002 -2.7514 -0.9261 30 1 0.6051 -2.2374 -1.1009 31 1 1.6740 -2.2776 -2.5235 32 1 1.1452 1.7827 -1.1667 33 1 2.0729 3.2491 -1.5637 34 1 1.4358 2.2188 -2.8678 35 1 4.9067 1.3134 -0.6034 36 1 3.7792 2.6270 -0.1894 37 1 3.3833 0.9457 0.2404 38 1 3.5711 1.7650 -3.9340 39 1 5.8671 1.2041 -2.0026 40 1 5.1330 0.0226 -3.1133 41 1 5.7847 1.4349 -5.0450 42 1 7.2074 0.9806 -4.0768 43 1 7.2672 3.3871 -4.6728 44 1 7.1135 3.1683 -2.9128 45 1 4.8178 3.7299 -4.8445 46 1 5.5517 4.9109 -3.7328 47 1 3.4779 3.9530 -2.7703 48 1 4.9009 3.4986 -1.8024 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339162124.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:35 Heat of formation + Delta-G solvation = -47.145657 kcal Electronic energy + Delta-G solvation = -24744.019448 eV Core-core repulsion = 21605.566854 eV Total energy + Delta-G solvation = -3138.452593 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -40.37019 -37.89409 -35.73974 -34.38219 -32.65382 -30.49446 -29.41773 -28.95998 -26.96360 -26.12725 -25.22243 -23.58805 -22.18332 -21.57516 -20.39341 -19.05157 -17.82952 -16.70477 -15.70400 -15.35252 -14.95858 -14.51742 -14.47369 -13.99998 -13.90074 -13.77587 -13.35967 -13.18393 -12.61673 -12.35768 -12.13360 -11.88957 -11.78391 -11.65146 -11.49080 -11.43437 -11.27199 -11.05691 -11.00508 -10.88082 -10.70892 -10.60099 -10.49332 -10.42501 -10.19450 -9.96863 -9.89466 -9.77069 -9.51407 -9.13860 -8.62252 -8.40183 -7.55771 -6.19130 -4.27208 3.20916 3.28631 3.31511 3.48972 4.04022 4.32093 4.90357 4.97641 5.01329 5.11105 5.28256 5.37491 5.43107 5.58814 5.72061 5.76207 5.80483 5.83126 5.89676 5.91839 6.06340 6.18618 6.19986 6.25428 6.26227 6.30749 6.35123 6.41892 6.45098 6.47244 6.51216 6.53096 6.59185 6.64184 6.68964 6.79176 6.85406 6.90510 6.97498 7.19926 7.27729 7.44641 7.68153 7.87935 8.12346 8.50934 8.77803 9.10570 9.41401 10.84776 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.021019 B = 0.005529 C = 0.005233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.796054 B = 5063.311461 C = 5348.993408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.231 3.769 3 H 0.086 0.914 4 C -0.527 4.527 5 H 0.060 0.940 6 C 0.068 3.932 7 N -0.887 5.887 8 Si 0.895 3.105 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.591 5.591 13 C 0.095 3.905 14 C 0.519 3.481 15 O -0.572 6.572 16 C -0.068 4.068 17 C -0.158 4.158 18 C -0.173 4.173 19 C -0.054 4.054 20 C -0.129 4.129 21 C -0.115 4.115 22 C -0.119 4.119 23 C -0.117 4.117 24 C -0.117 4.117 25 H 0.014 0.986 26 H 0.032 0.968 27 H 0.094 0.906 28 H 0.264 0.736 29 H 0.045 0.955 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.087 0.913 33 H 0.062 0.938 34 H 0.048 0.952 35 H 0.054 0.946 36 H 0.056 0.944 37 H 0.112 0.888 38 H 0.067 0.933 39 H 0.057 0.943 40 H 0.092 0.908 41 H 0.057 0.943 42 H 0.054 0.946 43 H 0.053 0.947 44 H 0.059 0.941 45 H 0.057 0.943 46 H 0.055 0.945 47 H 0.061 0.939 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.592 4.765 -8.176 10.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.130 3.870 3 H 0.104 0.896 4 C -0.566 4.566 5 H 0.079 0.921 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.723 3.277 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.321 5.321 13 C -0.049 4.049 14 C 0.308 3.692 15 O -0.454 6.454 16 C -0.071 4.071 17 C -0.215 4.215 18 C -0.230 4.230 19 C -0.073 4.073 20 C -0.166 4.166 21 C -0.153 4.153 22 C -0.156 4.156 23 C -0.154 4.154 24 C -0.154 4.154 25 H 0.033 0.967 26 H 0.052 0.948 27 H 0.113 0.887 28 H 0.074 0.926 29 H 0.063 0.937 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.106 0.894 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.131 0.869 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.110 0.890 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.074 0.926 47 H 0.080 0.920 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.714 4.559 -8.486 10.725 hybrid contribution 0.201 -0.476 1.019 1.143 sum 4.915 4.084 -7.467 9.828 Atomic orbital electron populations 1.22204 0.98504 0.99909 1.00823 1.19686 0.91349 0.95119 0.80812 0.89647 1.21354 1.31801 1.13303 0.90140 0.92143 1.24865 0.94732 0.94958 0.98914 1.69846 1.36080 1.22565 1.23978 0.86534 0.78662 0.80150 0.82367 1.20527 1.21118 1.19897 1.48195 1.46868 1.12866 1.24158 1.21352 0.99953 0.83467 1.00094 1.20476 0.78223 0.88843 0.81678 1.90491 1.53207 1.69022 1.32667 1.20597 0.96705 0.92245 0.97560 1.22320 0.96835 1.00007 1.02350 1.22556 1.00605 1.03437 0.96375 1.20868 0.95307 0.93783 0.97332 1.21932 0.94672 1.02237 0.97749 1.21501 0.99171 0.95214 0.99378 1.21549 0.97121 0.95846 1.01132 1.21506 0.96180 0.98601 0.99138 1.21675 0.99167 0.95941 0.98655 0.96695 0.94847 0.88701 0.92559 0.93651 0.91747 0.92340 0.89410 0.91949 0.93274 0.92740 0.92491 0.86944 0.91487 0.92427 0.88992 0.92452 0.92745 0.92858 0.92270 0.92380 0.92583 0.91986 0.91680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.42 8.39 37.16 0.31 -3.11 16 2 C 0.23 5.17 0.81 -69.08 -0.06 5.11 16 3 H 0.09 1.94 2.83 -51.93 -0.15 1.79 16 4 C -0.53 -13.10 7.32 -34.44 -0.25 -13.36 16 5 H 0.06 1.56 7.68 -52.49 -0.40 1.15 16 6 C 0.07 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -22.66 11.32 55.43 0.63 -22.03 16 8 Si 0.90 19.97 29.54 -169.99 -5.02 14.95 16 9 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 10 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 12 N -0.59 -12.54 2.75 -175.26 -0.48 -13.03 16 13 C 0.09 1.85 9.82 59.85 0.59 2.44 16 14 C 0.52 10.77 6.18 -10.98 -0.07 10.70 16 15 O -0.57 -12.71 13.18 5.57 0.07 -12.63 16 16 C -0.07 -1.21 0.30 -155.66 -0.05 -1.26 16 17 C -0.16 -2.66 7.47 37.16 0.28 -2.39 16 18 C -0.17 -3.18 7.00 37.16 0.26 -2.92 16 19 C -0.05 -0.85 1.19 -90.62 -0.11 -0.96 16 20 C -0.13 -2.06 4.59 -26.73 -0.12 -2.18 16 21 C -0.12 -1.54 5.92 -26.73 -0.16 -1.69 16 22 C -0.12 -1.39 5.92 -26.73 -0.16 -1.55 16 23 C -0.12 -1.37 5.92 -26.75 -0.16 -1.53 16 24 C -0.12 -1.56 4.56 -26.75 -0.12 -1.69 16 25 H 0.01 0.29 7.28 -51.93 -0.38 -0.09 16 26 H 0.03 0.71 6.63 -51.93 -0.34 0.37 16 27 H 0.09 2.27 6.07 -51.93 -0.32 1.95 16 28 H 0.26 6.52 8.31 -40.82 -0.34 6.18 16 29 H 0.04 0.89 8.10 -51.93 -0.42 0.47 16 30 H 0.06 1.19 6.34 -51.93 -0.33 0.86 16 31 H 0.06 1.09 7.36 -51.93 -0.38 0.71 16 32 H 0.09 1.65 3.68 -51.93 -0.19 1.46 16 33 H 0.06 0.94 6.72 -51.93 -0.35 0.59 16 34 H 0.05 0.78 8.13 -51.93 -0.42 0.35 16 35 H 0.05 0.96 5.66 -51.93 -0.29 0.66 16 36 H 0.06 0.96 7.29 -51.93 -0.38 0.58 16 37 H 0.11 2.44 3.96 -51.93 -0.21 2.23 16 38 H 0.07 1.13 8.11 -51.93 -0.42 0.71 16 39 H 0.06 0.92 6.07 -51.93 -0.31 0.61 16 40 H 0.09 1.73 5.48 -51.93 -0.28 1.45 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.06 0.80 6.63 -51.93 -0.34 0.45 16 48 H 0.06 0.89 6.91 -51.93 -0.36 0.53 16 LS Contribution 336.88 15.07 5.08 5.08 Total: -1.00 -25.97 336.88 -7.59 -33.56 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -7.95 Total: 6.88 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: 0.09 Total: -12.77 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: 0.15 Total: -35.06 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.07 Total: -12.63 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -25.97 -7.59 -33.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339162124.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.589 kcal (2) G-P(sol) polarization free energy of solvation -25.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds