Wall clock time and date at job start Tue Mar 31 2020 05:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47419 * 2 1 4 4 C 1.52997 * 109.47170 * 120.00186 * 2 1 3 5 5 C 1.53001 * 109.46997 * 60.00310 * 4 2 1 6 6 C 1.52997 * 109.46997 * 179.97438 * 5 4 2 7 7 C 1.53006 * 109.47127 * 174.99904 * 6 5 4 8 8 N 1.46898 * 109.47006 * 179.97438 * 7 6 5 9 9 C 1.47480 * 111.00236 * 265.96947 * 8 7 6 10 10 C 1.53513 * 87.92916 * 221.29737 * 9 8 7 11 11 O 1.42893 * 114.17175 * 272.37065 * 10 9 8 12 12 C 1.50711 * 114.16494 * 139.67123 * 10 9 8 13 13 H 1.07995 * 119.99831 * 266.15326 * 12 10 9 14 14 C 1.37871 * 120.00029 * 86.16081 * 12 10 9 15 15 N 1.31515 * 120.00222 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 120.00015 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47240 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47248 * 119.99602 * 16 14 12 19 19 H 1.48507 * 109.47145 * 239.99622 * 16 14 12 20 20 C 1.47486 * 110.99742 * 169.99744 * 8 7 6 21 21 C 1.53000 * 109.47580 * 59.99528 * 5 4 2 22 22 C 1.53001 * 109.47194 * 300.00603 * 21 5 4 23 23 H 1.09006 * 109.46733 * 299.99162 * 22 21 5 24 24 C 1.53005 * 109.46939 * 179.97438 * 22 21 5 25 25 C 1.52990 * 109.47179 * 59.99569 * 22 21 5 26 26 H 1.08998 * 109.47414 * 299.99800 * 1 2 3 27 27 H 1.09000 * 109.47338 * 59.99790 * 1 2 3 28 28 H 1.09003 * 109.47419 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47322 * 300.00009 * 4 2 1 30 30 H 1.09001 * 109.46746 * 179.97438 * 4 2 1 31 31 H 1.09002 * 109.46801 * 299.99817 * 5 4 2 32 32 H 1.09001 * 109.47502 * 55.00061 * 6 5 4 33 33 H 1.09001 * 109.47289 * 294.99857 * 6 5 4 34 34 H 1.09001 * 109.47002 * 299.99574 * 7 6 5 35 35 H 1.08993 * 109.46955 * 60.00011 * 7 6 5 36 36 H 1.09004 * 113.47382 * 336.06529 * 9 8 7 37 37 H 1.08994 * 113.47564 * 106.53120 * 9 8 7 38 38 H 0.96700 * 114.00308 * 273.84813 * 11 10 9 39 39 H 0.97001 * 119.99974 * 180.02562 * 15 14 12 40 40 H 1.09004 * 113.47513 * 253.46989 * 20 8 7 41 41 H 1.08995 * 113.47365 * 23.93428 * 20 8 7 42 42 H 1.09002 * 109.46818 * 60.00299 * 21 5 4 43 43 H 1.08994 * 109.47281 * 179.97438 * 21 5 4 44 44 H 1.08993 * 109.46985 * 299.99529 * 24 22 21 45 45 H 1.09003 * 109.46928 * 59.99825 * 24 22 21 46 46 H 1.08992 * 109.46684 * 179.97438 * 24 22 21 47 47 H 1.09004 * 109.47257 * 180.02562 * 25 22 21 48 48 H 1.08997 * 109.47838 * 60.00116 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.5300 -2.1638 1.2491 6 6 2.0405 -2.8853 2.4979 7 6 1.4305 -4.2870 2.5624 8 7 1.9212 -4.9799 3.7611 9 6 3.1055 -5.8015 3.4492 10 6 2.5167 -6.8938 4.3530 11 8 2.8734 -6.7681 5.7310 12 6 2.6818 -8.2929 3.8177 13 1 1.8939 -8.7436 3.2325 14 6 3.8385 -8.9975 4.0751 15 7 4.7982 -8.4486 4.7874 16 14 4.0428 -10.7319 3.4122 17 1 2.8288 -11.1161 2.6483 18 1 5.2276 -10.7839 2.5184 19 1 4.2344 -11.6749 4.5433 20 6 1.1796 -6.2345 3.9871 21 6 2.0399 -2.8850 -0.0002 22 6 1.5299 -2.1636 -1.2494 23 1 0.4399 -2.1637 -1.2494 24 6 2.0404 -2.8846 -2.4987 25 6 2.0399 -0.7213 -1.2493 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6767 -0.2075 2.1392 30 1 3.1300 -0.7216 1.2489 31 1 0.4400 -2.1638 1.2491 32 1 1.7525 -2.3226 3.3860 33 1 3.1268 -2.9635 2.4539 34 1 0.3442 -4.2088 2.6066 35 1 1.7185 -4.8497 1.6745 36 1 3.1681 -6.0926 2.4006 37 1 4.0374 -5.3810 3.8269 38 1 3.7161 -7.1843 5.9587 39 1 5.6122 -8.9442 4.9682 40 1 0.4794 -6.1810 4.8208 41 1 0.7282 -6.6411 3.0821 42 1 3.1299 -2.8850 -0.0002 43 1 1.6770 -3.9128 0.0000 44 1 3.1303 -2.8842 -2.4985 45 1 1.6774 -3.9123 -2.4989 46 1 1.6767 -2.3709 -3.3886 47 1 1.6763 -0.2072 -2.1390 48 1 3.1299 -0.7211 -1.2493 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001617442620.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:31 Heat of formation + Delta-G solvation = -53.724913 kcal Electronic energy + Delta-G solvation = -23126.657559 eV Core-core repulsion = 19987.919667 eV Total energy + Delta-G solvation = -3138.737891 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.78765 -38.93519 -34.85773 -33.47523 -33.17428 -32.02481 -29.38451 -26.95417 -26.56538 -26.50251 -24.84720 -24.26307 -21.96697 -20.92363 -20.10415 -18.74324 -18.55812 -17.20228 -15.57433 -15.36900 -15.08284 -14.79503 -14.51692 -14.30029 -14.09640 -13.97563 -13.75638 -13.08768 -12.95738 -12.61593 -12.44698 -12.04819 -12.03717 -11.81291 -11.67545 -11.58781 -11.44324 -11.28674 -11.18443 -10.99285 -10.90966 -10.75093 -10.60001 -10.46881 -10.22854 -10.15610 -9.95019 -9.79782 -9.72193 -9.20894 -8.62730 -8.12572 -7.81820 -6.25467 -4.35052 3.18852 3.27627 3.31565 4.25875 4.53096 4.58113 4.62282 4.89962 4.97766 5.00354 5.07557 5.18250 5.29115 5.36467 5.41320 5.51044 5.52503 5.59526 5.62385 5.69768 5.75073 5.83571 5.85646 5.87800 5.93026 6.01438 6.05023 6.06265 6.11188 6.13402 6.18115 6.25127 6.28412 6.34006 6.38569 6.44097 6.49034 6.61267 6.68140 6.74691 7.09663 7.25714 7.39674 7.78519 7.99589 8.10954 8.67399 9.35088 9.71716 10.80491 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.024067 B = 0.003611 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.157651 B = 7752.217774 C = 8429.830363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.092 4.092 3 H 0.065 0.935 4 C -0.108 4.108 5 C -0.086 4.086 6 C -0.102 4.102 7 C 0.018 3.982 8 N -0.473 5.473 9 C -0.019 4.019 10 C 0.246 3.754 11 O -0.570 6.570 12 C -0.534 4.534 13 H 0.066 0.934 14 C 0.070 3.930 15 N -0.898 5.898 16 Si 0.903 3.097 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.281 1.281 20 C 0.003 3.997 21 C -0.111 4.111 22 C -0.093 4.093 23 H 0.070 0.930 24 C -0.148 4.148 25 C -0.108 4.108 26 H 0.052 0.948 27 H 0.049 0.951 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.040 0.960 36 H 0.057 0.943 37 H 0.066 0.934 38 H 0.389 0.611 39 H 0.270 0.730 40 H 0.069 0.931 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.064 0.936 44 H 0.053 0.947 45 H 0.054 0.946 46 H 0.050 0.950 47 H 0.057 0.943 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.192 13.891 -11.571 18.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.110 4.110 3 H 0.083 0.917 4 C -0.146 4.146 5 C -0.105 4.105 6 C -0.140 4.140 7 C -0.111 4.111 8 N -0.195 5.195 9 C -0.148 4.148 10 C 0.204 3.796 11 O -0.382 6.382 12 C -0.572 4.572 13 H 0.084 0.916 14 C -0.132 4.132 15 N -0.539 5.539 16 Si 0.730 3.270 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.206 1.206 20 C -0.126 4.126 21 C -0.148 4.148 22 C -0.112 4.112 23 H 0.088 0.912 24 C -0.205 4.205 25 C -0.145 4.145 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.058 0.942 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.245 0.755 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.072 0.928 45 H 0.073 0.927 46 H 0.069 0.931 47 H 0.075 0.925 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.551 14.718 -10.968 19.176 hybrid contribution 0.695 -1.689 -1.201 2.186 sum -4.856 13.029 -12.168 18.477 Atomic orbital electron populations 1.21939 0.95514 1.02193 1.01114 1.21094 0.95842 0.98791 0.95269 0.91687 1.21601 1.00560 0.95361 0.97053 1.21184 1.00289 0.94264 0.94750 1.21468 1.00517 0.95289 0.96725 1.22704 0.99015 0.95711 0.93627 1.68860 1.05754 1.15926 1.28977 1.24704 0.94521 0.95717 0.99887 1.19376 0.88709 0.90947 0.80555 1.86027 1.45953 1.81058 1.25209 1.21640 1.02502 0.99665 1.33375 0.91571 1.25063 0.95153 0.98648 0.94291 1.69309 1.07320 1.37885 1.39392 0.86359 0.78198 0.83589 0.78804 1.19594 1.20758 1.20642 1.24034 0.98839 0.90120 0.99593 1.21703 1.00802 0.99029 0.93274 1.21176 1.00388 0.94691 0.94923 0.91159 1.21837 1.01197 1.00302 0.97199 1.21613 1.00467 0.95294 0.97158 0.92934 0.93215 0.91898 0.92095 0.92074 0.91217 0.91701 0.92214 0.92377 0.94194 0.92501 0.91588 0.75496 0.91911 0.91274 0.92055 0.92067 0.91737 0.92787 0.92683 0.93083 0.92472 0.92129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 8.50 37.15 0.32 -0.99 16 2 C -0.09 -0.84 3.19 -90.62 -0.29 -1.13 16 3 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 4 C -0.11 -1.14 4.73 -26.73 -0.13 -1.27 16 5 C -0.09 -1.02 1.92 -90.62 -0.17 -1.19 16 6 C -0.10 -1.51 5.01 -26.73 -0.13 -1.65 16 7 C 0.02 0.32 4.57 -3.82 -0.02 0.30 16 8 N -0.47 -10.14 6.33 -244.61 -1.55 -11.69 16 9 C -0.02 -0.45 7.13 -7.54 -0.05 -0.50 16 10 C 0.25 6.37 1.57 -91.24 -0.14 6.23 16 11 O -0.57 -15.83 13.54 -35.23 -0.48 -16.31 16 12 C -0.53 -14.42 8.68 -34.44 -0.30 -14.72 16 13 H 0.07 1.75 7.81 -52.49 -0.41 1.34 16 14 C 0.07 1.86 5.40 -17.82 -0.10 1.77 16 15 N -0.90 -24.32 11.02 55.43 0.61 -23.71 16 16 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 17 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 18 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 20 C 0.00 0.07 7.10 -7.54 -0.05 0.02 16 21 C -0.11 -1.29 4.24 -26.73 -0.11 -1.40 16 22 C -0.09 -0.92 2.45 -90.62 -0.22 -1.14 16 23 H 0.07 0.69 6.43 -51.93 -0.33 0.36 16 24 C -0.15 -1.38 9.19 37.16 0.34 -1.04 16 25 C -0.11 -0.98 4.73 -26.73 -0.13 -1.11 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.58 4.81 -51.93 -0.25 0.33 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.82 6.43 -51.93 -0.33 0.48 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.06 0.94 8.08 -51.93 -0.42 0.52 16 35 H 0.04 0.69 5.72 -51.93 -0.30 0.39 16 36 H 0.06 1.32 7.37 -51.93 -0.38 0.94 16 37 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16 38 H 0.39 10.94 6.34 45.56 0.29 11.23 16 39 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 40 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 41 H 0.06 1.30 7.87 -51.93 -0.41 0.89 16 42 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.06 0.82 6.56 -51.93 -0.34 0.48 16 44 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 48 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 358.00 15.07 5.40 5.40 Total: -1.00 -27.36 358.00 -10.60 -37.96 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: -8.36 Total: 10.74 kcal Atomic # 6 Polarization: -16.64 SS G_CDS: -1.19 Total: -17.83 kcal Atomic # 7 Polarization: -34.46 SS G_CDS: -0.94 Total: -35.40 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: -0.48 Total: -16.31 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -27.36 -10.60 -37.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001617442620.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.767 kcal (2) G-P(sol) polarization free energy of solvation -27.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds