Wall clock time and date at job start Tue Mar 31 2020 05:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52827 * 1 3 3 H 1.11029 * 106.75585 * 2 1 4 4 C 1.52240 * 110.62141 * 116.20851 * 2 1 3 5 5 C 1.52769 * 110.74901 * 73.57217 * 4 2 1 6 6 H 1.08696 * 110.35619 * 299.83060 * 5 4 2 7 7 C 1.53325 * 109.13799 * 180.19825 * 5 4 2 8 8 C 1.53006 * 109.46844 * 175.00118 * 7 5 4 9 9 N 1.46900 * 109.47143 * 179.97438 * 8 7 5 10 10 C 1.47484 * 110.99947 * 265.96709 * 9 8 7 11 11 C 1.53510 * 87.93371 * 221.29579 * 10 9 8 12 12 O 1.42901 * 114.17155 * 272.37914 * 11 10 9 13 13 C 1.50697 * 114.34022 * 139.68332 * 11 10 9 14 14 H 1.08004 * 120.00061 * 266.07362 * 13 11 10 15 15 C 1.37877 * 119.99876 * 86.08046 * 13 11 10 16 16 N 1.31508 * 120.00016 * 359.97438 * 15 13 11 17 17 Si 1.86803 * 120.00030 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.46888 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47110 * 119.99594 * 17 15 13 20 20 H 1.48502 * 109.47027 * 240.00157 * 17 15 13 21 21 C 1.47481 * 111.00047 * 169.99631 * 9 8 7 22 22 C 1.52756 * 108.90826 * 61.12770 * 5 4 2 23 23 C 1.52236 * 110.77073 * 298.92123 * 22 5 4 24 24 H 1.11043 * 107.09899 * 170.34316 * 23 22 5 25 25 C 1.52829 * 110.62586 * 286.30967 * 23 22 5 26 26 C 1.51635 * 112.96347 * 52.23146 * 23 22 5 27 27 H 1.08994 * 109.47374 * 177.14946 * 1 2 3 28 28 H 1.08998 * 109.47493 * 297.15421 * 1 2 3 29 29 H 1.09002 * 109.46868 * 57.15338 * 1 2 3 30 30 H 1.09314 * 109.55694 * 194.10920 * 4 2 1 31 31 H 1.09325 * 109.54782 * 313.06390 * 4 2 1 32 32 H 1.09003 * 109.47347 * 294.99265 * 7 5 4 33 33 H 1.08994 * 109.47848 * 55.00166 * 7 5 4 34 34 H 1.09001 * 109.46667 * 299.99209 * 8 7 5 35 35 H 1.08997 * 109.47322 * 59.99234 * 8 7 5 36 36 H 1.09003 * 113.47430 * 336.06710 * 10 9 8 37 37 H 1.09006 * 113.47357 * 106.53072 * 10 9 8 38 38 H 0.96696 * 113.99592 * 273.84047 * 12 11 10 39 39 H 0.97004 * 120.00316 * 180.02562 * 16 15 13 40 40 H 1.08994 * 113.47503 * 253.46828 * 21 9 8 41 41 H 1.09003 * 113.47304 * 23.88144 * 21 9 8 42 42 H 1.09336 * 109.18347 * 178.21835 * 22 5 4 43 43 H 1.09314 * 109.22220 * 59.69393 * 22 5 4 44 44 H 1.09002 * 109.47328 * 183.80867 * 25 23 22 45 45 H 1.09001 * 109.46733 * 63.81012 * 25 23 22 46 46 H 1.09004 * 109.47185 * 303.81100 * 25 23 22 47 47 H 1.10232 * 108.70012 * 78.67914 * 26 23 22 48 48 H 1.10181 * 108.76220 * 193.77004 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5283 0.0000 0.0000 3 1 1.8484 1.0632 0.0000 4 6 2.0644 -0.6293 1.2784 5 6 1.8769 -2.1452 1.2553 6 1 0.8224 -2.3945 1.1699 7 6 2.4236 -2.7392 2.5589 8 6 2.1279 -4.2399 2.5989 9 7 2.6522 -4.8092 3.8475 10 6 4.0084 -5.3544 3.6512 11 6 3.5946 -6.5480 4.5234 12 8 3.7963 -6.3471 5.9238 13 6 4.1017 -7.8801 4.0342 14 1 3.4818 -8.4927 3.3963 15 6 5.3569 -8.3169 4.4011 16 7 6.1118 -7.5708 5.1776 17 14 5.9852 -9.9685 3.7953 18 1 4.9515 -10.6089 2.9430 19 1 7.2248 -9.7662 3.0032 20 1 6.2783 -10.8436 4.9588 21 6 2.1828 -6.1947 4.0347 22 6 2.6570 -2.7226 0.0757 23 6 2.1407 -2.1588 -1.2408 24 1 2.8527 -2.4739 -2.0325 25 6 0.7872 -2.7735 -1.5958 26 6 2.0865 -0.6435 -1.2547 27 1 -0.3634 -1.0263 -0.0511 28 1 -0.3634 0.4690 0.9144 29 1 -0.3633 0.5574 -0.8634 30 1 3.1283 -0.3999 1.3809 31 1 1.5349 -0.2146 2.1402 32 1 3.5009 -2.5799 2.6071 33 1 1.9458 -2.2520 3.4087 34 1 1.0507 -4.3993 2.5507 35 1 2.6056 -4.7272 1.7490 36 1 4.2220 -5.6255 2.6172 37 1 4.7916 -4.7414 4.0974 38 1 4.6863 -6.5703 6.2289 39 1 6.9951 -7.8779 5.4355 40 1 1.4189 -6.2939 4.8057 41 1 1.9084 -6.6898 3.1031 42 1 2.5518 -3.8109 0.0736 43 1 3.7159 -2.4763 0.1893 44 1 0.4673 -2.4087 -2.5719 45 1 0.0512 -2.4907 -0.8432 46 1 0.8779 -3.8593 -1.6255 47 1 3.1034 -0.2550 -1.4283 48 1 1.4838 -0.3183 -2.1178 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001617442622.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:48 Heat of formation + Delta-G solvation = -53.721492 kcal Electronic energy + Delta-G solvation = -23175.336667 eV Core-core repulsion = 20036.598924 eV Total energy + Delta-G solvation = -3138.737743 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.67213 -38.89256 -34.85894 -33.43614 -33.14398 -32.02255 -29.47238 -27.47147 -26.58884 -26.25827 -24.84735 -24.30585 -21.80496 -21.26071 -20.23059 -18.56792 -18.04535 -17.19455 -15.96408 -15.16484 -14.95116 -14.77831 -14.42256 -14.26850 -14.12798 -14.08323 -13.71391 -13.23018 -12.93984 -12.73878 -12.64673 -12.05789 -12.01701 -11.86076 -11.66535 -11.47267 -11.30476 -11.21701 -11.15419 -10.98999 -10.84964 -10.79042 -10.61191 -10.44781 -10.22187 -10.14413 -9.88708 -9.79734 -9.67156 -9.20726 -8.62427 -8.12403 -7.81760 -6.25372 -4.34979 3.18939 3.27692 3.31638 4.25946 4.51469 4.55538 4.59005 4.89198 4.97992 5.04790 5.08598 5.11600 5.17555 5.30215 5.39274 5.48278 5.52890 5.60105 5.65844 5.68697 5.77514 5.80141 5.89131 5.92066 5.94535 5.99361 6.02697 6.06118 6.09223 6.14171 6.22446 6.24384 6.31661 6.35631 6.39456 6.45891 6.48878 6.62003 6.68521 6.74951 7.09599 7.25862 7.39858 7.78631 7.99872 8.11206 8.67497 9.35156 9.71921 10.80565 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.026641 B = 0.003516 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.773463 B = 7961.494840 C = 8424.299138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.084 4.084 3 H 0.056 0.944 4 C -0.106 4.106 5 C -0.082 4.082 6 H 0.070 0.930 7 C -0.104 4.104 8 C 0.019 3.981 9 N -0.473 5.473 10 C -0.019 4.019 11 C 0.246 3.754 12 O -0.570 6.570 13 C -0.533 4.533 14 H 0.066 0.934 15 C 0.070 3.930 16 N -0.898 5.898 17 Si 0.903 3.097 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.281 1.281 21 C 0.003 3.997 22 C -0.109 4.109 23 C -0.085 4.085 24 H 0.057 0.943 25 C -0.149 4.149 26 C -0.101 4.101 27 H 0.060 0.940 28 H 0.052 0.948 29 H 0.049 0.951 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.040 0.960 36 H 0.057 0.943 37 H 0.066 0.934 38 H 0.389 0.611 39 H 0.270 0.730 40 H 0.069 0.931 41 H 0.061 0.939 42 H 0.065 0.935 43 H 0.059 0.941 44 H 0.049 0.951 45 H 0.059 0.941 46 H 0.053 0.947 47 H 0.053 0.947 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.682 12.533 -11.945 18.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.103 4.103 3 H 0.074 0.926 4 C -0.144 4.144 5 C -0.101 4.101 6 H 0.088 0.912 7 C -0.141 4.141 8 C -0.110 4.110 9 N -0.195 5.195 10 C -0.148 4.148 11 C 0.204 3.796 12 O -0.383 6.383 13 C -0.572 4.572 14 H 0.084 0.916 15 C -0.132 4.132 16 N -0.539 5.539 17 Si 0.731 3.269 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.206 1.206 21 C -0.126 4.126 22 C -0.147 4.147 23 C -0.103 4.103 24 H 0.075 0.925 25 C -0.206 4.206 26 C -0.139 4.139 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.058 0.942 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.245 0.755 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.078 0.922 44 H 0.068 0.932 45 H 0.078 0.922 46 H 0.072 0.928 47 H 0.072 0.928 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.248 13.277 -11.403 19.347 hybrid contribution 1.171 -1.487 -1.135 2.207 sum -7.076 11.790 -12.538 18.608 Atomic orbital electron populations 1.21945 0.95452 1.02121 1.01140 1.20777 0.95585 0.99029 0.94861 0.92568 1.21453 1.01021 0.95332 0.96550 1.21008 0.99896 0.94467 0.94699 0.91191 1.21566 1.01102 0.95139 0.96343 1.22701 0.99490 0.95660 0.93181 1.68860 1.05759 1.16723 1.28165 1.24704 0.91095 0.98841 1.00205 1.19375 0.89179 0.90741 0.80270 1.86028 1.39403 1.89850 1.22985 1.21639 1.00831 1.03909 1.30798 0.91576 1.25065 0.96213 0.97622 0.94263 1.69307 1.10956 1.37581 1.36053 0.86358 0.78722 0.83148 0.78721 1.19592 1.20760 1.20644 1.24036 1.00195 0.88910 0.99453 1.21519 0.99496 1.00289 0.93376 1.20781 0.97309 0.94574 0.97673 0.92486 1.21943 0.97323 1.00488 1.00855 1.21179 1.00783 0.94811 0.97101 0.92076 0.92868 0.93187 0.92198 0.92096 0.92236 0.91712 0.92371 0.94214 0.92503 0.91576 0.75499 0.91912 0.91281 0.92060 0.91680 0.92189 0.93190 0.92187 0.92764 0.92822 0.92576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 8.91 37.07 0.33 -0.95 16 2 C -0.08 -0.78 2.62 -91.78 -0.24 -1.02 16 3 H 0.06 0.49 8.29 -50.76 -0.42 0.07 16 4 C -0.11 -1.13 4.58 -27.24 -0.12 -1.25 16 5 C -0.08 -0.97 2.02 -90.70 -0.18 -1.15 16 6 H 0.07 0.83 6.46 -52.10 -0.34 0.49 16 7 C -0.10 -1.53 4.98 -26.56 -0.13 -1.67 16 8 C 0.02 0.32 4.59 -3.82 -0.02 0.30 16 9 N -0.47 -10.13 6.33 -244.59 -1.55 -11.68 16 10 C -0.02 -0.45 7.13 -7.54 -0.05 -0.50 16 11 C 0.25 6.37 1.56 -91.24 -0.14 6.23 16 12 O -0.57 -15.83 13.53 -35.23 -0.48 -16.31 16 13 C -0.53 -14.41 8.69 -34.44 -0.30 -14.71 16 14 H 0.07 1.75 7.81 -52.48 -0.41 1.34 16 15 C 0.07 1.86 5.39 -17.82 -0.10 1.77 16 16 N -0.90 -24.32 11.02 55.43 0.61 -23.71 16 17 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 18 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 21 C 0.00 0.07 7.09 -7.54 -0.05 0.01 16 22 C -0.11 -1.28 4.39 -27.25 -0.12 -1.40 16 23 C -0.08 -0.85 2.62 -91.79 -0.24 -1.09 16 24 H 0.06 0.56 8.29 -50.75 -0.42 0.14 16 25 C -0.15 -1.40 8.90 37.07 0.33 -1.07 16 26 C -0.10 -0.93 4.78 -28.11 -0.13 -1.06 16 27 H 0.06 0.55 4.85 -51.93 -0.25 0.30 16 28 H 0.05 0.44 8.10 -51.93 -0.42 0.02 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.66 8.17 -51.75 -0.42 0.23 16 31 H 0.06 0.64 8.09 -51.75 -0.42 0.22 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.06 0.94 8.08 -51.93 -0.42 0.53 16 35 H 0.04 0.69 5.71 -51.93 -0.30 0.39 16 36 H 0.06 1.32 7.38 -51.93 -0.38 0.94 16 37 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16 38 H 0.39 10.94 6.33 45.56 0.29 11.23 16 39 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 40 H 0.07 1.55 8.14 -51.93 -0.42 1.12 16 41 H 0.06 1.30 7.87 -51.93 -0.41 0.89 16 42 H 0.06 0.83 6.48 -51.74 -0.34 0.49 16 43 H 0.06 0.74 8.17 -51.75 -0.42 0.31 16 44 H 0.05 0.42 8.13 -51.93 -0.42 0.00 16 45 H 0.06 0.57 4.81 -51.93 -0.25 0.32 16 46 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.05 0.48 8.24 -51.23 -0.42 0.06 16 48 H 0.06 0.47 7.97 -51.26 -0.41 0.06 16 LS Contribution 356.38 15.07 5.37 5.37 Total: -1.00 -27.39 356.38 -10.50 -37.89 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: -8.25 Total: 10.56 kcal Atomic # 6 Polarization: -16.38 SS G_CDS: -1.18 Total: -17.56 kcal Atomic # 7 Polarization: -34.45 SS G_CDS: -0.94 Total: -35.39 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: -0.48 Total: -16.31 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -27.39 -10.50 -37.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001617442622.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.832 kcal (2) G-P(sol) polarization free energy of solvation -27.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds