Wall clock time and date at job start Tue Mar 31 2020 06:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31863 * 122.74407 * 2 1 4 4 C 1.29140 * 117.07698 * 180.02562 * 3 2 1 5 5 Cl 1.73595 * 124.92348 * 180.02562 * 4 3 2 6 6 S 1.70979 * 110.15346 * 359.73088 * 4 3 2 7 7 C 1.33569 * 122.74433 * 180.02562 * 2 1 3 8 8 S 1.76204 * 126.01865 * 359.95407 * 7 2 1 9 9 O 1.42105 * 106.39972 * 96.46491 * 8 7 2 10 10 O 1.42098 * 106.40426 * 323.54664 * 8 7 2 11 11 N 1.65595 * 107.21987 * 210.00376 * 8 7 2 12 12 C 1.36947 * 119.99862 * 65.00234 * 11 8 7 13 13 H 1.08004 * 119.99694 * 359.97438 * 12 11 8 14 14 C 1.38808 * 119.99783 * 180.02562 * 12 11 8 15 15 N 1.31614 * 120.00226 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99574 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.47175 * 89.99826 * 16 14 12 18 18 H 1.48497 * 109.46823 * 209.99602 * 16 14 12 19 19 H 1.48497 * 109.47188 * 329.99977 * 16 14 12 20 20 H 1.08997 * 109.46983 * 269.95740 * 1 2 3 21 21 H 1.08999 * 109.47423 * 29.95410 * 1 2 3 22 22 H 1.09000 * 109.47017 * 149.95685 * 1 2 3 23 23 H 0.96997 * 120.00034 * 245.00430 * 11 8 7 24 24 H 0.97000 * 119.99847 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2202 1.1091 0.0000 4 6 3.5053 0.9816 -0.0005 5 17 4.6348 2.2998 0.0000 6 16 3.9330 -0.6738 0.0065 7 6 2.2295 -1.1234 -0.0005 8 16 1.5912 -2.7658 -0.0001 9 8 1.5880 -3.1954 -1.3547 10 8 0.4244 -2.7427 0.8106 11 7 2.6909 -3.7189 0.7901 12 6 2.9384 -3.5187 2.1220 13 1 2.4167 -2.7388 2.6569 14 6 3.8606 -4.3173 2.7843 15 7 4.4968 -5.2672 2.1323 16 14 4.1977 -4.0445 4.6013 17 1 3.2697 -4.8777 5.4074 18 1 5.5995 -4.4272 4.9075 19 1 3.9919 -2.6119 4.9333 20 1 -0.3633 -0.0008 1.0276 21 1 -0.3634 0.8904 -0.5131 22 1 -0.3633 -0.8896 -0.5145 23 1 3.1597 -4.4190 0.3096 24 1 5.1409 -5.8255 2.5952 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040807104.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:25 Heat of formation + Delta-G solvation = -37.768466 kcal Electronic energy + Delta-G solvation = -15876.778160 eV Core-core repulsion = 12877.213701 eV Total energy + Delta-G solvation = -2999.564459 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 281.969 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.67854 -37.00241 -36.11010 -34.87436 -34.82978 -31.75536 -31.17508 -27.62461 -24.74047 -24.59888 -20.52020 -18.41889 -18.37421 -18.19013 -16.50802 -16.46096 -15.23080 -14.87338 -14.72343 -14.35297 -13.68190 -13.57133 -12.90579 -12.52623 -12.07793 -11.76836 -11.61127 -11.44477 -11.31508 -11.24005 -11.11153 -10.96868 -10.69545 -10.64365 -10.40005 -10.17173 -9.62987 -9.42203 -8.61788 -8.49754 -6.69049 -4.09237 0.44210 0.85152 1.30226 1.77606 1.95335 2.67964 3.09008 3.14249 3.16129 3.89619 4.28009 4.49584 4.55654 4.92895 5.26120 5.67898 5.72265 5.81309 5.90489 6.32764 6.85953 7.26907 7.52495 8.46061 8.56162 9.01106 10.45300 Molecular weight = 281.97amu Principal moments of inertia in cm(-1) A = 0.016744 B = 0.008156 C = 0.006379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.852104 B = 3432.417585 C = 4388.006751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.176 3.824 3 N -0.477 5.477 4 C 0.065 3.935 5 Cl 0.019 6.981 6 S 0.311 5.689 7 C -0.791 4.791 8 S 2.610 3.390 9 O -0.993 6.993 10 O -0.956 6.956 11 N -0.939 5.939 12 C -0.267 4.267 13 H 0.108 0.892 14 C 0.036 3.964 15 N -0.863 5.863 16 Si 0.924 3.076 17 H -0.272 1.272 18 H -0.279 1.279 19 H -0.266 1.266 20 H 0.095 0.905 21 H 0.081 0.919 22 H 0.079 0.921 23 H 0.413 0.587 24 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.176 8.512 -1.777 8.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.039 3.961 3 N -0.196 5.196 4 C -0.236 4.236 5 Cl 0.046 6.954 6 S 0.564 5.436 7 C -0.986 4.986 8 S 2.696 3.304 9 O -0.982 6.982 10 O -0.946 6.946 11 N -0.692 5.692 12 C -0.411 4.411 13 H 0.125 0.875 14 C -0.174 4.174 15 N -0.503 5.503 16 Si 0.749 3.251 17 H -0.198 1.198 18 H -0.204 1.204 19 H -0.190 1.190 20 H 0.114 0.886 21 H 0.100 0.900 22 H 0.098 0.902 23 H 0.249 0.751 24 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.251 8.618 -2.208 8.984 hybrid contribution 0.306 0.722 0.818 1.134 sum 1.557 9.340 -1.389 9.570 Atomic orbital electron populations 1.20640 0.86106 1.03598 1.04723 1.19548 0.97676 0.84234 0.94595 1.65846 1.03725 1.32864 1.17192 1.27489 0.93353 0.96011 1.06758 1.98408 1.54656 1.45731 1.96586 1.83949 1.02782 0.94324 1.62558 1.38459 1.04976 1.31883 1.23317 1.07613 0.77689 0.72195 0.72926 1.93442 1.87859 1.80499 1.36353 1.93485 1.46141 1.85957 1.69039 1.51992 1.64129 1.36838 1.16227 1.19470 1.20977 1.18209 0.82414 0.87465 1.25324 0.95272 0.96028 1.00787 1.69687 1.25046 1.17935 1.37680 0.85955 0.78089 0.79387 0.81630 1.19764 1.20410 1.19032 0.88610 0.90010 0.90217 0.75137 0.91093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.46 9.30 36.01 0.33 -1.13 14 2 C 0.18 3.29 6.74 -84.21 -0.57 2.72 14 3 N -0.48 -8.71 10.54 -8.99 -0.09 -8.81 14 4 C 0.07 1.10 8.03 51.63 0.41 1.52 14 5 Cl 0.02 0.25 29.33 -51.86 -1.52 -1.27 14 6 S 0.31 5.42 23.22 -107.50 -2.50 2.92 14 7 C -0.79 -15.62 6.49 29.10 0.19 -15.43 14 8 S 2.61 56.62 5.25 -107.50 -0.56 56.06 14 9 O -0.99 -23.17 18.02 -57.17 -1.03 -24.20 14 10 O -0.96 -22.03 16.01 -57.17 -0.92 -22.94 14 11 N -0.94 -21.33 5.75 31.50 0.18 -21.15 14 12 C -0.27 -6.29 9.63 -15.06 -0.15 -6.43 14 13 H 0.11 2.45 7.82 -52.48 -0.41 2.04 14 14 C 0.04 0.84 5.50 -17.43 -0.10 0.75 14 15 N -0.86 -21.08 13.06 55.49 0.72 -20.36 14 16 Si 0.92 18.39 29.55 -169.99 -5.02 13.37 14 17 H -0.27 -5.45 7.11 56.52 0.40 -5.04 14 18 H -0.28 -5.48 7.11 56.52 0.40 -5.08 14 19 H -0.27 -5.18 7.11 56.52 0.40 -4.78 14 20 H 0.10 1.45 8.14 -51.93 -0.42 1.03 14 21 H 0.08 1.09 8.14 -51.93 -0.42 0.67 14 22 H 0.08 1.28 6.86 -51.93 -0.36 0.93 14 23 H 0.41 9.42 8.02 -34.47 -0.28 9.15 14 24 H 0.28 6.40 8.31 -40.82 -0.34 6.06 14 LS Contribution 265.05 15.07 3.99 3.99 Total: -1.00 -27.79 265.05 -7.64 -35.43 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -1.02 Total: 4.97 kcal Atomic # 6 Polarization: -18.14 SS G_CDS: 0.13 Total: -18.01 kcal Atomic # 7 Polarization: -51.12 SS G_CDS: 0.81 Total: -50.31 kcal Atomic # 8 Polarization: -45.20 SS G_CDS: -1.95 Total: -47.14 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -5.02 Total: 13.37 kcal Atomic # 16 Polarization: 62.04 SS G_CDS: -3.06 Total: 58.98 kcal Atomic # 17 Polarization: 0.25 SS G_CDS: -1.52 Total: -1.27 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -27.79 -7.64 -35.43 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040807104.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.338 kcal (2) G-P(sol) polarization free energy of solvation -27.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds