Wall clock time and date at job start Tue Mar 31 2020 05:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46733 * 2 1 4 4 H 1.08998 * 109.47512 * 303.99831 * 3 2 1 5 5 C 1.50703 * 109.46931 * 184.00009 * 3 2 1 6 6 H 1.07999 * 119.99824 * 240.00244 * 5 3 2 7 7 C 1.37881 * 119.99855 * 59.99451 * 5 3 2 8 8 N 1.31514 * 119.99944 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99735 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47355 * 0.02562 * 9 7 5 11 11 H 1.48492 * 109.46922 * 120.00721 * 9 7 5 12 12 H 1.48504 * 109.46959 * 240.00652 * 9 7 5 13 13 N 1.46895 * 109.47019 * 64.00306 * 3 2 1 14 14 C 1.46909 * 110.99803 * 203.91946 * 13 3 2 15 15 C 1.53002 * 109.47144 * 205.44905 * 14 13 3 16 16 C 1.52997 * 109.46986 * 180.02562 * 15 14 13 17 17 C 1.53004 * 109.47249 * 59.99801 * 16 15 14 18 18 C 1.53002 * 109.47026 * 180.02562 * 17 16 15 19 19 C 1.53002 * 109.46916 * 300.00019 * 18 17 16 20 20 C 1.52994 * 109.47422 * 59.99740 * 18 17 16 21 21 C 1.53004 * 109.47026 * 180.02562 * 18 17 16 22 22 C 1.53002 * 109.47026 * 179.97438 * 21 18 17 23 23 C 1.53002 * 109.46799 * 299.99801 * 17 16 15 24 24 C 1.52996 * 109.46868 * 85.44703 * 14 13 3 25 25 H 1.09002 * 109.47270 * 174.92274 * 1 2 3 26 26 H 1.08997 * 109.47661 * 294.92976 * 1 2 3 27 27 H 1.09004 * 109.46789 * 54.93086 * 1 2 3 28 28 H 1.08992 * 109.47415 * 240.00281 * 2 1 3 29 29 H 1.09004 * 109.46929 * 119.99583 * 2 1 3 30 30 H 0.96998 * 119.99312 * 179.97438 * 8 7 5 31 31 H 1.00903 * 111.00736 * 79.97081 * 13 3 2 32 32 H 1.09003 * 109.46904 * 325.44640 * 14 13 3 33 33 H 1.08993 * 109.47309 * 60.00133 * 15 14 13 34 34 H 1.09003 * 109.47003 * 299.99674 * 15 14 13 35 35 H 1.08996 * 109.47013 * 179.97438 * 16 15 14 36 36 H 1.09002 * 109.47304 * 299.99911 * 16 15 14 37 37 H 1.08994 * 109.47307 * 60.00306 * 17 16 15 38 38 H 1.08989 * 109.47369 * 59.99789 * 19 18 17 39 39 H 1.09005 * 109.46777 * 180.02562 * 19 18 17 40 40 H 1.09003 * 109.47003 * 299.99844 * 19 18 17 41 41 H 1.09006 * 109.47071 * 60.00072 * 20 18 17 42 42 H 1.08998 * 109.47308 * 179.97438 * 20 18 17 43 43 H 1.09002 * 109.47258 * 300.00289 * 20 18 17 44 44 H 1.08996 * 109.47047 * 299.99676 * 21 18 17 45 45 H 1.09002 * 109.46878 * 59.99627 * 21 18 17 46 46 H 1.08994 * 109.47009 * 59.99902 * 22 21 18 47 47 H 1.08993 * 109.46884 * 180.02562 * 22 21 18 48 48 H 1.09006 * 109.46939 * 299.99731 * 22 21 18 49 49 H 1.08993 * 109.47627 * 299.99770 * 23 17 16 50 50 H 1.09002 * 109.46659 * 180.02562 * 23 17 16 51 51 H 1.09006 * 109.47156 * 299.99920 * 24 14 13 52 52 H 1.09003 * 109.47410 * 60.00246 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6193 1.9767 -0.8520 5 6 3.5437 1.4438 -0.0991 6 1 4.1361 1.8929 0.6843 7 6 4.1631 0.8714 -1.1899 8 7 3.4417 0.3248 -2.1440 9 14 6.0271 0.8722 -1.3124 10 1 6.6013 1.5434 -0.1187 11 1 6.5195 -0.5271 -1.3777 12 1 6.4423 1.6008 -2.5380 13 7 1.6308 2.1065 1.2448 14 6 1.5795 3.5645 1.0716 15 6 1.7843 4.2465 2.4258 16 6 1.7303 5.7648 2.2454 17 6 0.3674 6.1625 1.6749 18 6 0.3137 7.6809 1.4940 19 6 0.5187 8.3634 2.8479 20 6 1.4177 8.1190 0.5297 21 6 -1.0494 8.0786 0.9241 22 6 -1.1034 9.5970 0.7437 23 6 0.1628 5.4805 0.3207 24 6 0.2170 3.9626 0.5008 25 1 -0.3634 -1.0236 -0.0909 26 1 -0.3634 0.4331 0.9319 27 1 -0.3633 0.5905 -0.8411 28 1 1.8934 -0.5137 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.8775 -0.0775 -2.9115 31 1 2.2419 1.8543 2.0071 32 1 2.3664 3.8766 0.3849 33 1 2.7550 3.9629 2.8323 34 1 0.9974 3.9343 3.1125 35 1 1.8757 6.2507 3.2102 36 1 2.5169 6.0774 1.5585 37 1 -0.4191 5.8501 2.3617 38 1 1.4895 8.0800 3.2543 39 1 0.4800 9.4451 2.7190 40 1 -0.2679 8.0513 3.5349 41 1 1.2717 7.6327 -0.4349 42 1 1.3792 9.2006 0.4004 43 1 2.3887 7.8356 0.9361 44 1 -1.1959 7.5924 -0.0404 45 1 -1.8357 7.7665 1.6115 46 1 -0.3171 9.9094 0.0566 47 1 -2.0746 9.8804 0.3382 48 1 -0.9571 10.0829 1.7085 49 1 0.9493 5.7930 -0.3661 50 1 -0.8080 5.7642 -0.0859 51 1 0.0711 3.4766 -0.4640 52 1 -0.5699 3.6504 1.1875 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054181949.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:37 Heat of formation + Delta-G solvation = -50.408950 kcal Electronic energy + Delta-G solvation = -24003.670498 eV Core-core repulsion = 21000.909493 eV Total energy + Delta-G solvation = -3002.761006 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.76458 -37.00567 -34.85661 -32.20410 -31.18374 -30.72508 -29.68061 -27.64380 -27.33172 -25.77703 -24.25428 -22.66402 -22.11074 -21.12155 -19.35285 -19.20658 -18.06393 -16.52107 -15.66827 -14.89037 -14.79455 -14.72282 -14.13615 -14.04484 -13.86731 -13.42073 -13.15051 -12.86196 -12.64096 -12.55304 -12.25055 -12.14223 -11.92662 -11.72822 -11.47456 -11.35547 -11.30084 -11.18276 -11.03902 -10.88514 -10.74281 -10.68281 -10.60012 -10.38484 -10.33129 -10.14617 -9.93144 -9.76863 -9.56465 -9.38749 -9.28864 -8.94046 -8.33937 -7.16069 -5.96207 -4.09011 3.26740 3.35358 3.38496 4.41556 4.64489 4.73597 4.81225 5.07345 5.21979 5.23674 5.29895 5.31699 5.37825 5.47548 5.56750 5.66609 5.71252 5.72529 5.85330 5.86573 5.88869 5.92448 5.96237 6.01783 6.04479 6.09031 6.09726 6.21348 6.25603 6.27505 6.37144 6.44548 6.51864 6.54539 6.56203 6.61404 6.63359 6.75909 6.78827 6.89981 7.04685 7.19367 7.22408 7.51725 7.66140 7.82050 8.14801 8.23759 8.41572 8.75703 9.05648 9.58567 11.03431 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.020180 B = 0.004208 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.146757 B = 6652.779478 C = 7209.096471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.106 4.106 3 C 0.216 3.784 4 H 0.032 0.968 5 C -0.542 4.542 6 H 0.052 0.948 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.886 3.114 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.285 1.285 13 N -0.687 5.687 14 C 0.095 3.905 15 C -0.118 4.118 16 C -0.112 4.112 17 C -0.072 4.072 18 C -0.059 4.059 19 C -0.144 4.144 20 C -0.147 4.147 21 C -0.116 4.116 22 C -0.155 4.155 23 C -0.115 4.115 24 C -0.102 4.102 25 H 0.022 0.978 26 H 0.046 0.954 27 H 0.036 0.964 28 H 0.088 0.912 29 H 0.029 0.971 30 H 0.260 0.740 31 H 0.325 0.675 32 H 0.044 0.956 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.056 0.944 39 H 0.052 0.948 40 H 0.051 0.949 41 H 0.059 0.941 42 H 0.051 0.949 43 H 0.057 0.943 44 H 0.066 0.934 45 H 0.058 0.942 46 H 0.056 0.944 47 H 0.048 0.952 48 H 0.054 0.946 49 H 0.061 0.939 50 H 0.057 0.943 51 H 0.059 0.941 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.356 14.629 7.030 17.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.145 4.145 3 C 0.108 3.892 4 H 0.050 0.950 5 C -0.581 4.581 6 H 0.070 0.930 7 C -0.135 4.135 8 N -0.524 5.524 9 Si 0.714 3.286 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.317 5.317 14 C -0.015 4.015 15 C -0.156 4.156 16 C -0.150 4.150 17 C -0.090 4.090 18 C -0.059 4.059 19 C -0.201 4.201 20 C -0.204 4.204 21 C -0.153 4.153 22 C -0.212 4.212 23 C -0.153 4.153 24 C -0.140 4.140 25 H 0.042 0.958 26 H 0.065 0.935 27 H 0.055 0.945 28 H 0.107 0.893 29 H 0.048 0.952 30 H 0.070 0.930 31 H 0.142 0.858 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.078 0.922 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.084 0.916 45 H 0.077 0.923 46 H 0.075 0.925 47 H 0.067 0.933 48 H 0.073 0.927 49 H 0.080 0.920 50 H 0.076 0.924 51 H 0.077 0.923 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.016 14.436 6.728 17.831 hybrid contribution 2.087 0.103 -0.230 2.102 sum -5.929 14.539 6.498 16.993 Atomic orbital electron populations 1.21677 0.99034 0.98106 1.00356 1.21495 0.92050 0.99430 1.01521 1.19158 0.92376 0.90986 0.86708 0.94968 1.21934 0.92894 1.37552 1.05767 0.92960 1.24929 0.97810 0.95097 0.95698 1.69892 1.34695 1.38199 1.09581 0.86639 0.86353 0.77710 0.77884 1.19976 1.20993 1.21084 1.60922 1.56468 1.05232 1.09035 1.21287 0.96016 0.89429 0.94813 1.21704 1.01073 0.94657 0.98161 1.21648 0.97143 0.95919 1.00292 1.21144 0.97631 0.92870 0.97367 1.20548 0.95021 0.95148 0.95195 1.21973 1.01652 0.99971 0.96531 1.22032 0.98393 1.00501 0.99502 1.21628 0.96641 0.95776 1.01252 1.21896 1.01202 0.96558 1.01586 1.21688 1.01113 0.95931 0.96591 1.21475 0.97826 0.93687 1.01020 0.95838 0.93467 0.94533 0.89327 0.95249 0.93025 0.85814 0.93754 0.92689 0.92096 0.92441 0.91896 0.91613 0.92453 0.92853 0.93001 0.92242 0.93028 0.92420 0.91584 0.92306 0.92533 0.93315 0.92721 0.91995 0.92437 0.92274 0.92434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.81 9.73 37.16 0.36 -2.45 16 2 C -0.11 -2.57 5.45 -26.73 -0.15 -2.72 16 3 C 0.22 5.32 1.80 -68.86 -0.12 5.20 16 4 H 0.03 0.89 7.15 -51.93 -0.37 0.52 16 5 C -0.54 -14.64 8.21 -34.44 -0.28 -14.92 16 6 H 0.05 1.41 7.76 -52.49 -0.41 1.01 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.74 16 8 N -0.89 -25.12 11.30 55.43 0.63 -24.49 16 9 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 N -0.69 -14.34 5.55 -100.95 -0.56 -14.90 16 14 C 0.10 1.75 2.30 -67.71 -0.16 1.59 16 15 C -0.12 -1.80 5.19 -26.73 -0.14 -1.94 16 16 C -0.11 -1.45 4.50 -26.73 -0.12 -1.57 16 17 C -0.07 -0.86 1.55 -90.62 -0.14 -1.00 16 18 C -0.06 -0.61 0.35 -154.51 -0.05 -0.66 16 19 C -0.14 -1.35 7.77 37.16 0.29 -1.07 16 20 C -0.15 -1.56 7.42 37.15 0.28 -1.28 16 21 C -0.12 -1.12 4.64 -26.73 -0.12 -1.24 16 22 C -0.16 -1.32 9.21 37.16 0.34 -0.98 16 23 C -0.12 -1.58 4.50 -26.75 -0.12 -1.71 16 24 C -0.10 -1.71 5.41 -26.76 -0.14 -1.85 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.94 7.87 -51.93 -0.41 0.53 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.09 2.39 5.97 -51.93 -0.31 2.08 16 29 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.33 6.79 8.06 -39.29 -0.32 6.47 16 32 H 0.04 0.95 7.59 -51.93 -0.39 0.56 16 33 H 0.05 0.86 8.12 -51.93 -0.42 0.44 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.06 0.67 6.43 -51.93 -0.33 0.34 16 36 H 0.06 0.86 6.43 -51.93 -0.33 0.53 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.55 6.43 -51.94 -0.33 0.21 16 39 H 0.05 0.46 6.43 -51.93 -0.33 0.12 16 40 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.67 6.43 -51.93 -0.33 0.34 16 42 H 0.05 0.49 6.43 -51.93 -0.33 0.15 16 43 H 0.06 0.63 6.43 -51.93 -0.33 0.30 16 44 H 0.07 0.68 6.43 -51.93 -0.33 0.34 16 45 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.06 0.48 6.43 -51.93 -0.33 0.15 16 47 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.05 0.44 6.43 -51.93 -0.33 0.11 16 49 H 0.06 0.90 6.43 -51.93 -0.33 0.56 16 50 H 0.06 0.73 6.43 -51.93 -0.33 0.39 16 51 H 0.06 1.12 7.45 -51.93 -0.39 0.73 16 52 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 369.70 15.07 5.57 5.57 Total: -1.00 -26.87 369.70 -9.72 -36.59 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -9.96 Total: 5.86 kcal Atomic # 6 Polarization: -24.48 SS G_CDS: -0.38 Total: -24.86 kcal Atomic # 7 Polarization: -39.46 SS G_CDS: 0.07 Total: -39.39 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -26.87 -9.72 -36.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054181949.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.816 kcal (2) G-P(sol) polarization free energy of solvation -26.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds