Wall clock time and date at job start Tue Mar 31 2020 05:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46733 * 2 1 4 4 H 1.08998 * 109.47512 * 303.99831 * 3 2 1 5 5 C 1.50703 * 109.46931 * 184.00009 * 3 2 1 6 6 H 1.07999 * 119.99824 * 240.00244 * 5 3 2 7 7 C 1.37881 * 119.99855 * 59.99451 * 5 3 2 8 8 N 1.31514 * 119.99944 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99735 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47355 * 0.02562 * 9 7 5 11 11 H 1.48492 * 109.46922 * 120.00721 * 9 7 5 12 12 H 1.48504 * 109.46959 * 240.00652 * 9 7 5 13 13 N 1.46895 * 109.47019 * 64.00306 * 3 2 1 14 14 C 1.46909 * 110.99803 * 203.91946 * 13 3 2 15 15 C 1.53002 * 109.47144 * 205.44905 * 14 13 3 16 16 C 1.52997 * 109.46986 * 180.02562 * 15 14 13 17 17 C 1.53004 * 109.47249 * 59.99801 * 16 15 14 18 18 C 1.53002 * 109.47026 * 180.02562 * 17 16 15 19 19 C 1.53002 * 109.46916 * 300.00019 * 18 17 16 20 20 C 1.52994 * 109.47422 * 59.99740 * 18 17 16 21 21 C 1.53004 * 109.47026 * 180.02562 * 18 17 16 22 22 C 1.53002 * 109.47026 * 179.97438 * 21 18 17 23 23 C 1.53002 * 109.46799 * 299.99801 * 17 16 15 24 24 C 1.52996 * 109.46868 * 85.44703 * 14 13 3 25 25 H 1.09002 * 109.47270 * 174.92274 * 1 2 3 26 26 H 1.08997 * 109.47661 * 294.92976 * 1 2 3 27 27 H 1.09004 * 109.46789 * 54.93086 * 1 2 3 28 28 H 1.08992 * 109.47415 * 240.00281 * 2 1 3 29 29 H 1.09004 * 109.46929 * 119.99583 * 2 1 3 30 30 H 0.96998 * 119.99312 * 179.97438 * 8 7 5 31 31 H 1.00903 * 111.00736 * 79.97081 * 13 3 2 32 32 H 1.09003 * 109.46904 * 325.44640 * 14 13 3 33 33 H 1.08993 * 109.47309 * 60.00133 * 15 14 13 34 34 H 1.09003 * 109.47003 * 299.99674 * 15 14 13 35 35 H 1.08996 * 109.47013 * 179.97438 * 16 15 14 36 36 H 1.09002 * 109.47304 * 299.99911 * 16 15 14 37 37 H 1.08994 * 109.47307 * 60.00306 * 17 16 15 38 38 H 1.08989 * 109.47369 * 59.99789 * 19 18 17 39 39 H 1.09005 * 109.46777 * 180.02562 * 19 18 17 40 40 H 1.09003 * 109.47003 * 299.99844 * 19 18 17 41 41 H 1.09006 * 109.47071 * 60.00072 * 20 18 17 42 42 H 1.08998 * 109.47308 * 179.97438 * 20 18 17 43 43 H 1.09002 * 109.47258 * 300.00289 * 20 18 17 44 44 H 1.08996 * 109.47047 * 299.99676 * 21 18 17 45 45 H 1.09002 * 109.46878 * 59.99627 * 21 18 17 46 46 H 1.08994 * 109.47009 * 59.99902 * 22 21 18 47 47 H 1.08993 * 109.46884 * 180.02562 * 22 21 18 48 48 H 1.09006 * 109.46939 * 299.99731 * 22 21 18 49 49 H 1.08993 * 109.47627 * 299.99770 * 23 17 16 50 50 H 1.09002 * 109.46659 * 180.02562 * 23 17 16 51 51 H 1.09006 * 109.47156 * 299.99920 * 24 14 13 52 52 H 1.09003 * 109.47410 * 60.00246 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6193 1.9767 -0.8520 5 6 3.5437 1.4438 -0.0991 6 1 4.1361 1.8929 0.6843 7 6 4.1631 0.8714 -1.1899 8 7 3.4417 0.3248 -2.1440 9 14 6.0271 0.8722 -1.3124 10 1 6.6013 1.5434 -0.1187 11 1 6.5195 -0.5271 -1.3777 12 1 6.4423 1.6008 -2.5380 13 7 1.6308 2.1065 1.2448 14 6 1.5795 3.5645 1.0716 15 6 1.7843 4.2465 2.4258 16 6 1.7303 5.7648 2.2454 17 6 0.3674 6.1625 1.6749 18 6 0.3137 7.6809 1.4940 19 6 0.5187 8.3634 2.8479 20 6 1.4177 8.1190 0.5297 21 6 -1.0494 8.0786 0.9241 22 6 -1.1034 9.5970 0.7437 23 6 0.1628 5.4805 0.3207 24 6 0.2170 3.9626 0.5008 25 1 -0.3634 -1.0236 -0.0909 26 1 -0.3634 0.4331 0.9319 27 1 -0.3633 0.5905 -0.8411 28 1 1.8934 -0.5137 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.8775 -0.0775 -2.9115 31 1 2.2419 1.8543 2.0071 32 1 2.3664 3.8766 0.3849 33 1 2.7550 3.9629 2.8323 34 1 0.9974 3.9343 3.1125 35 1 1.8757 6.2507 3.2102 36 1 2.5169 6.0774 1.5585 37 1 -0.4191 5.8501 2.3617 38 1 1.4895 8.0800 3.2543 39 1 0.4800 9.4451 2.7190 40 1 -0.2679 8.0513 3.5349 41 1 1.2717 7.6327 -0.4349 42 1 1.3792 9.2006 0.4004 43 1 2.3887 7.8356 0.9361 44 1 -1.1959 7.5924 -0.0404 45 1 -1.8357 7.7665 1.6115 46 1 -0.3171 9.9094 0.0566 47 1 -2.0746 9.8804 0.3382 48 1 -0.9571 10.0829 1.7085 49 1 0.9493 5.7930 -0.3661 50 1 -0.8080 5.7642 -0.0859 51 1 0.0711 3.4766 -0.4640 52 1 -0.5699 3.6504 1.1875 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054181949.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:36 Heat of formation + Delta-G solvation = -62.930417 kcal Electronic energy + Delta-G solvation = -24004.213470 eV Core-core repulsion = 21000.909493 eV Total energy + Delta-G solvation = -3003.303977 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.83066 -38.46048 -36.40887 -34.01565 -32.77824 -31.91714 -30.81667 -29.06741 -28.15410 -27.49268 -25.35778 -24.40493 -23.34058 -22.32461 -21.21372 -20.57015 -18.96246 -18.61272 -16.90254 -16.64845 -16.03769 -15.77655 -15.44693 -15.32048 -14.97711 -14.86644 -14.64609 -14.45307 -13.87799 -13.61875 -13.43379 -13.25631 -13.17429 -13.10724 -13.03460 -12.77133 -12.65300 -12.54778 -12.38119 -12.26185 -12.19087 -12.04197 -11.90630 -11.75805 -11.51390 -11.42445 -11.34811 -11.23526 -11.03297 -10.98678 -10.62072 -10.57204 -10.43885 -9.00313 -8.05217 -6.27840 1.34734 1.37292 1.47306 2.38723 3.13577 3.57914 3.77774 3.87671 3.91869 4.14129 4.16215 4.40251 4.48776 4.53003 4.59364 4.61525 4.65253 4.66413 4.71975 4.73863 4.76621 4.79337 4.86442 4.92520 4.95117 5.00519 5.08306 5.14460 5.16096 5.20967 5.23006 5.25363 5.25786 5.31648 5.36395 5.38807 5.40254 5.43711 5.47519 5.50512 5.57481 5.59146 5.66988 5.74005 5.77192 5.80915 6.13222 6.23239 6.44441 6.88199 7.05815 7.43850 8.90789 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.020180 B = 0.004208 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.146757 B = 6652.779478 C = 7209.096471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.103 4.103 3 C 0.226 3.774 4 H -0.004 1.004 5 C -0.557 4.557 6 H 0.047 0.953 7 C 0.019 3.981 8 N -0.911 5.911 9 Si 0.949 3.051 10 H -0.271 1.271 11 H -0.278 1.278 12 H -0.282 1.282 13 N -0.679 5.679 14 C 0.095 3.905 15 C -0.110 4.110 16 C -0.107 4.107 17 C -0.065 4.065 18 C -0.054 4.054 19 C -0.142 4.142 20 C -0.147 4.147 21 C -0.116 4.116 22 C -0.153 4.153 23 C -0.108 4.108 24 C -0.095 4.095 25 H 0.043 0.957 26 H 0.057 0.943 27 H 0.028 0.972 28 H 0.059 0.941 29 H 0.027 0.973 30 H 0.261 0.739 31 H 0.326 0.674 32 H 0.007 0.993 33 H 0.050 0.950 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.052 0.948 37 H 0.072 0.928 38 H 0.055 0.945 39 H 0.063 0.937 40 H 0.057 0.943 41 H 0.046 0.954 42 H 0.064 0.936 43 H 0.050 0.950 44 H 0.056 0.944 45 H 0.062 0.938 46 H 0.054 0.946 47 H 0.054 0.946 48 H 0.062 0.938 49 H 0.049 0.951 50 H 0.071 0.929 51 H 0.028 0.972 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.790 16.107 8.628 19.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.142 4.142 3 C 0.117 3.883 4 H 0.014 0.986 5 C -0.596 4.596 6 H 0.065 0.935 7 C -0.180 4.180 8 N -0.550 5.550 9 Si 0.775 3.225 10 H -0.195 1.195 11 H -0.204 1.204 12 H -0.208 1.208 13 N -0.307 5.307 14 C -0.015 4.015 15 C -0.148 4.148 16 C -0.145 4.145 17 C -0.084 4.084 18 C -0.054 4.054 19 C -0.199 4.199 20 C -0.204 4.204 21 C -0.153 4.153 22 C -0.210 4.210 23 C -0.146 4.146 24 C -0.133 4.133 25 H 0.062 0.938 26 H 0.076 0.924 27 H 0.047 0.953 28 H 0.077 0.923 29 H 0.046 0.954 30 H 0.070 0.930 31 H 0.143 0.857 32 H 0.025 0.975 33 H 0.068 0.932 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.065 0.935 42 H 0.083 0.917 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.081 0.919 46 H 0.073 0.927 47 H 0.073 0.927 48 H 0.081 0.919 49 H 0.068 0.932 50 H 0.089 0.911 51 H 0.047 0.953 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.455 15.923 8.336 19.862 hybrid contribution 2.209 -0.362 -0.752 2.361 sum -6.246 15.561 7.584 18.403 Atomic orbital electron populations 1.21524 0.96393 0.99381 1.00545 1.21361 0.94396 0.98533 0.99877 1.18885 0.91135 0.91244 0.87042 0.98564 1.22217 0.94216 1.37437 1.05775 0.93509 1.25661 1.02092 0.94844 0.95440 1.70020 1.36327 1.38717 1.09980 0.85657 0.81203 0.77820 0.77850 1.19537 1.20408 1.20786 1.60893 1.55775 1.06713 1.07344 1.21347 0.95803 0.88087 0.96237 1.21633 1.01154 0.96094 0.95907 1.21623 0.97461 0.94085 1.01307 1.21097 0.97142 0.94193 0.95950 1.20492 0.95319 0.93627 0.95949 1.21953 1.01781 1.00541 0.95643 1.22031 0.98234 1.01250 0.98918 1.21618 0.96196 0.96682 1.00800 1.21874 1.01545 0.95540 1.02040 1.21627 1.01478 0.93657 0.97834 1.21397 0.96840 0.95786 0.99307 0.93795 0.92377 0.95325 0.92294 0.95409 0.92957 0.85732 0.97503 0.93159 0.91012 0.90225 0.92903 0.90977 0.92567 0.91789 0.92415 0.93540 0.91726 0.93061 0.92490 0.91878 0.92680 0.92734 0.91934 0.93236 0.91063 0.95321 0.91713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.03 9.73 71.98 0.70 -4.33 16 2 C -0.10 -5.08 5.45 30.60 0.17 -4.92 16 3 C 0.23 11.54 1.80 44.17 0.08 11.62 16 4 H 0.00 -0.21 7.15 -2.39 -0.02 -0.23 16 5 C -0.56 -30.92 8.21 25.60 0.21 -30.71 16 6 H 0.05 2.58 7.76 -2.91 -0.02 2.56 16 7 C 0.02 1.09 5.29 84.66 0.45 1.53 16 8 N -0.91 -53.09 11.30 21.45 0.24 -52.85 16 9 Si 0.95 44.18 29.54 68.60 2.03 46.20 16 10 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 11 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 12 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 13 N -0.68 -28.83 5.55 -473.29 -2.63 -31.46 16 14 C 0.10 3.60 2.30 44.91 0.10 3.70 16 15 C -0.11 -3.27 5.19 30.59 0.16 -3.11 16 16 C -0.11 -2.61 4.50 30.59 0.14 -2.48 16 17 C -0.07 -1.47 1.55 -10.79 -0.02 -1.48 16 18 C -0.05 -0.99 0.35 -52.18 -0.02 -1.01 16 19 C -0.14 -2.24 7.77 71.98 0.56 -1.68 16 20 C -0.15 -2.93 7.42 71.98 0.53 -2.39 16 21 C -0.12 -1.98 4.64 30.60 0.14 -1.84 16 22 C -0.15 -2.22 9.21 71.98 0.66 -1.56 16 23 C -0.11 -2.94 4.50 30.58 0.14 -2.80 16 24 C -0.10 -3.24 5.41 30.58 0.17 -3.08 16 25 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.06 2.27 7.87 -2.39 -0.02 2.25 16 27 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 28 H 0.06 3.27 5.97 -2.39 -0.01 3.26 16 29 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 31 H 0.33 13.72 8.06 -89.69 -0.72 13.00 16 32 H 0.01 0.31 7.59 -2.39 -0.02 0.29 16 33 H 0.05 1.54 8.12 -2.39 -0.02 1.52 16 34 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.08 1.64 6.43 -2.39 -0.02 1.63 16 36 H 0.05 1.41 6.43 -2.39 -0.02 1.40 16 37 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.06 0.90 6.43 -2.39 -0.02 0.89 16 39 H 0.06 0.89 6.43 -2.38 -0.02 0.87 16 40 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.05 1.03 6.43 -2.38 -0.02 1.02 16 42 H 0.06 1.10 6.43 -2.39 -0.02 1.09 16 43 H 0.05 1.08 6.43 -2.39 -0.02 1.06 16 44 H 0.06 1.08 6.43 -2.39 -0.02 1.06 16 45 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.05 0.81 6.43 -2.39 -0.02 0.80 16 47 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 48 H 0.06 0.81 6.43 -2.38 -0.02 0.80 16 49 H 0.05 1.47 6.43 -2.39 -0.02 1.46 16 50 H 0.07 1.75 6.43 -2.39 -0.02 1.73 16 51 H 0.03 1.13 7.45 -2.38 -0.02 1.11 16 52 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -58.85 369.70 3.95 -54.90 By element: Atomic # 1 Polarization: 27.59 SS G_CDS: 0.14 Total: 27.73 kcal Atomic # 6 Polarization: -48.70 SS G_CDS: 4.17 Total: -44.53 kcal Atomic # 7 Polarization: -81.92 SS G_CDS: -2.39 Total: -84.31 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.20 kcal Total: -58.85 3.95 -54.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054181949.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.027 kcal (2) G-P(sol) polarization free energy of solvation -58.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds