Wall clock time and date at job start Tue Mar 31 2020 06:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86807 * 119.99615 * 2 1 4 4 H 1.48498 * 109.46776 * 269.99710 * 3 2 1 5 5 H 1.48501 * 109.47165 * 29.99481 * 3 2 1 6 6 H 1.48496 * 109.47041 * 149.99730 * 3 2 1 7 7 C 1.38710 * 120.00180 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00100 * 0.02562 * 7 2 1 9 9 S 1.76202 * 119.99965 * 180.02562 * 7 2 1 10 10 C 1.76194 * 100.00040 * 185.11887 * 9 7 2 11 11 C 1.39129 * 120.07672 * 85.50788 * 10 9 7 12 12 C 1.38013 * 119.91880 * 179.97438 * 11 10 9 13 13 C 1.38467 * 120.07952 * 0.02562 * 12 11 10 14 14 Cl 1.73594 * 119.92295 * 179.97438 * 13 12 11 15 15 C 1.38435 * 120.15877 * 359.97438 * 13 12 11 16 16 C 1.50699 * 119.96428 * 180.02562 * 15 13 12 17 17 F 1.39895 * 109.47494 * 180.02562 * 16 15 13 18 18 F 1.39897 * 109.47166 * 300.00630 * 16 15 13 19 19 F 1.39900 * 109.46928 * 60.00000 * 16 15 13 20 20 C 1.38049 * 120.07608 * 359.74868 * 15 13 12 21 21 H 0.96996 * 120.00509 * 359.97438 * 1 2 3 22 22 H 1.07993 * 120.04261 * 359.97438 * 11 10 9 23 23 H 1.07998 * 119.95886 * 180.02562 * 12 11 10 24 24 H 1.08000 * 120.04402 * 180.25407 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6179 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6528 0.6999 6 1 3.5478 1.4404 0.7001 7 6 2.0099 -1.2012 0.0005 8 1 1.4700 -2.1366 0.0005 9 16 3.7719 -1.2012 0.0012 10 6 4.0780 -2.9294 -0.1531 11 6 4.1068 -3.5229 -1.4111 12 6 4.3473 -4.8768 -1.5283 13 6 4.5594 -5.6445 -0.3956 14 17 4.8610 -7.3473 -0.5476 15 6 4.5316 -5.0574 0.8578 16 6 4.7636 -5.8970 2.0875 17 9 4.6871 -5.0877 3.2261 18 9 3.7879 -6.8970 2.1603 19 9 6.0306 -6.4860 2.0178 20 6 4.2972 -3.7027 0.9821 21 1 -0.4851 0.8400 0.0004 22 1 3.9410 -2.9248 -2.2950 23 1 4.3702 -5.3381 -2.5045 24 1 4.2796 -3.2445 1.9599 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058033718.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:55 Heat of formation + Delta-G solvation = -137.966277 kcal Electronic energy + Delta-G solvation = -17247.429393 eV Core-core repulsion = 13669.759683 eV Total energy + Delta-G solvation = -3577.669710 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 281.979 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -50.06258 -47.58314 -47.50981 -39.18612 -36.58319 -32.63229 -32.05627 -30.75089 -25.98780 -25.80997 -22.97330 -22.07732 -18.88154 -18.40068 -18.32279 -17.61264 -16.48890 -15.44130 -15.36244 -15.02094 -14.50345 -14.41690 -13.97721 -13.96294 -13.67999 -13.61386 -13.50605 -13.06415 -12.72725 -12.35777 -11.86976 -11.74851 -11.40551 -11.20332 -10.91376 -10.79557 -10.04870 -9.38838 -9.23495 -9.18845 -8.33775 -7.32372 -6.45294 -4.24130 0.81911 1.15175 1.87739 2.60057 2.79013 3.16327 3.28356 3.31950 3.41732 3.75155 4.09274 4.13512 4.47660 4.70384 4.76484 4.93421 5.17722 5.35831 5.37633 5.76230 5.85871 6.05408 6.43537 6.60543 7.78219 8.31405 8.97404 10.63724 Molecular weight = 281.98amu Principal moments of inertia in cm(-1) A = 0.027702 B = 0.005307 C = 0.004948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.521805 B = 5274.926964 C = 5657.011669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.097 3.903 3 Si 0.857 3.143 4 H -0.265 1.265 5 H -0.271 1.271 6 H -0.239 1.239 7 C -0.516 4.516 8 H 0.093 0.907 9 S -0.098 6.098 10 C -0.076 4.076 11 C -0.037 4.037 12 C -0.121 4.121 13 C 0.009 3.991 14 Cl -0.059 7.059 15 C -0.190 4.190 16 C 0.512 3.488 17 F -0.173 7.173 18 F -0.173 7.173 19 F -0.174 7.174 20 C -0.022 4.022 21 H 0.274 0.726 22 H 0.148 0.852 23 H 0.143 0.857 24 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.076 -10.274 -0.333 14.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.190 1.190 5 H -0.196 1.196 6 H -0.163 1.163 7 C -0.663 4.663 8 H 0.111 0.889 9 S 0.136 5.864 10 C -0.187 4.187 11 C -0.058 4.058 12 C -0.141 4.141 13 C -0.018 4.018 14 Cl -0.030 7.030 15 C -0.194 4.194 16 C 0.458 3.542 17 F -0.155 7.155 18 F -0.154 7.154 19 F -0.156 7.156 20 C -0.043 4.043 21 H 0.084 0.916 22 H 0.166 0.834 23 H 0.161 0.839 24 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 10.636 -9.394 -0.222 14.192 hybrid contribution -0.725 -0.603 0.047 0.945 sum 9.911 -9.997 -0.175 14.078 Atomic orbital electron populations 1.69918 1.05848 1.28019 1.46874 1.24733 0.94526 0.98875 0.93120 0.86750 0.81625 0.83501 0.79986 1.18960 1.19586 1.16292 1.22226 0.86421 0.97884 1.59774 0.88878 1.83195 1.11466 0.96082 1.95700 1.22343 1.00773 1.01790 0.93780 1.22009 0.92177 0.93378 0.98202 1.21081 1.01909 0.93848 0.97284 1.20622 1.01837 0.85577 0.93776 1.98387 1.93976 1.12414 1.98212 1.19844 1.12981 0.95438 0.91150 1.18105 0.74377 0.78340 0.83422 1.93180 1.96017 1.72871 1.53407 1.93223 1.62875 1.62672 1.96634 1.93212 1.40892 1.85004 1.96471 1.21618 0.92180 0.89960 1.00567 0.91615 0.83428 0.83925 0.82974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.98 13.97 55.49 0.78 -24.21 14 2 C 0.10 2.65 5.50 -17.46 -0.10 2.56 14 3 Si 0.86 19.80 27.74 -169.99 -4.71 15.08 14 4 H -0.26 -6.01 7.11 56.52 0.40 -5.61 14 5 H -0.27 -6.13 7.11 56.52 0.40 -5.73 14 6 H -0.24 -5.34 6.74 56.52 0.38 -4.96 14 7 C -0.52 -13.86 10.00 30.91 0.31 -13.55 14 8 H 0.09 2.73 8.02 -52.49 -0.42 2.31 14 9 S -0.10 -2.19 19.38 -107.50 -2.08 -4.27 14 10 C -0.08 -1.43 5.46 -38.93 -0.21 -1.64 14 11 C -0.04 -0.59 9.80 -39.33 -0.39 -0.98 14 12 C -0.12 -1.68 9.82 -39.58 -0.39 -2.07 14 13 C 0.01 0.14 6.26 -39.42 -0.25 -0.11 14 14 Cl -0.06 -0.78 26.58 -51.86 -1.38 -2.16 14 15 C -0.19 -3.02 5.37 -104.62 -0.56 -3.58 14 16 C 0.51 7.69 2.86 36.01 0.10 7.79 14 17 F -0.17 -2.62 15.97 2.25 0.04 -2.58 14 18 F -0.17 -2.63 16.38 2.25 0.04 -2.60 14 19 F -0.17 -2.51 16.38 2.25 0.04 -2.47 14 20 C -0.02 -0.39 9.18 -39.33 -0.36 -0.75 14 21 H 0.27 7.27 8.31 -40.82 -0.34 6.93 14 22 H 0.15 2.20 8.06 -52.49 -0.42 1.78 14 23 H 0.14 1.56 8.06 -52.49 -0.42 1.13 14 24 H 0.15 2.57 7.15 -52.49 -0.38 2.19 14 LS Contribution 261.19 15.07 3.94 3.94 Total: -1.00 -27.57 261.19 -5.99 -33.56 By element: Atomic # 1 Polarization: -1.17 SS G_CDS: -0.80 Total: -1.96 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: -1.84 Total: -12.33 kcal Atomic # 7 Polarization: -24.98 SS G_CDS: 0.78 Total: -24.21 kcal Atomic # 9 Polarization: -7.76 SS G_CDS: 0.11 Total: -7.65 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -4.71 Total: 15.08 kcal Atomic # 16 Polarization: -2.19 SS G_CDS: -2.08 Total: -4.27 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -1.38 Total: -2.16 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -27.57 -5.99 -33.56 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058033718.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.407 kcal (2) G-P(sol) polarization free energy of solvation -27.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds