Wall clock time and date at job start Tue Mar 31 2020 05:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.46836 * 2 1 4 4 H 1.09000 * 109.47386 * 305.63020 * 3 2 1 5 5 C 1.50705 * 109.46741 * 185.63305 * 3 2 1 6 6 H 1.08003 * 119.99480 * 239.99833 * 5 3 2 7 7 C 1.37877 * 120.00343 * 60.00075 * 5 3 2 8 8 N 1.31513 * 119.99998 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00197 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47171 * 270.00253 * 9 7 5 11 11 H 1.48506 * 109.47047 * 29.99707 * 9 7 5 12 12 H 1.48494 * 109.47231 * 149.99830 * 9 7 5 13 13 N 1.46901 * 109.47181 * 65.63450 * 3 2 1 14 14 C 1.46900 * 110.99676 * 203.67383 * 13 3 2 15 15 H 1.09005 * 108.85508 * 327.22738 * 14 13 3 16 16 C 1.54068 * 108.88058 * 85.79173 * 14 13 3 17 17 C 1.54064 * 112.81872 * 162.48919 * 16 14 13 18 18 C 1.50473 * 112.49724 * 41.71778 * 17 16 14 19 19 C 1.54244 * 108.51849 * 265.84669 * 18 17 16 20 20 H 1.08997 * 108.89291 * 319.33340 * 19 18 17 21 21 C 1.53004 * 108.89198 * 200.74643 * 19 18 17 22 22 C 1.52997 * 109.47443 * 59.99874 * 21 19 18 23 23 C 1.53003 * 109.46605 * 180.02562 * 21 19 18 24 24 C 1.52998 * 109.47120 * 299.99680 * 21 19 18 25 25 C 1.45540 * 112.40875 * 79.99345 * 19 18 17 26 26 C 1.50480 * 108.87291 * 208.67453 * 14 13 3 27 27 H 1.09006 * 109.46658 * 174.07677 * 1 2 3 28 28 H 1.08994 * 109.47166 * 294.07474 * 1 2 3 29 29 H 1.09002 * 109.47209 * 54.07691 * 1 2 3 30 30 H 1.08999 * 109.46576 * 240.00009 * 2 1 3 31 31 H 1.08993 * 109.47134 * 120.00461 * 2 1 3 32 32 H 0.96999 * 120.00307 * 179.97438 * 8 7 5 33 33 H 1.00901 * 110.99428 * 327.62388 * 13 3 2 34 34 H 1.08992 * 108.81187 * 283.35278 * 16 14 13 35 35 H 1.09003 * 108.81145 * 41.74107 * 16 14 13 36 36 H 1.09004 * 108.87927 * 162.49572 * 17 16 14 37 37 H 1.08997 * 108.88250 * 280.94148 * 17 16 14 38 38 H 1.09006 * 109.63273 * 25.55527 * 18 17 16 39 39 H 1.08997 * 109.63201 * 145.93865 * 18 17 16 40 40 H 1.09009 * 109.47008 * 59.99619 * 22 21 19 41 41 H 1.08993 * 109.47341 * 179.97438 * 22 21 19 42 42 H 1.08999 * 109.47025 * 299.99877 * 22 21 19 43 43 H 1.08994 * 109.47545 * 60.00080 * 23 21 19 44 44 H 1.09007 * 109.46608 * 180.02562 * 23 21 19 45 45 H 1.08995 * 109.47226 * 299.99847 * 23 21 19 46 46 H 1.08999 * 109.47113 * 60.00266 * 24 21 19 47 47 H 1.09002 * 109.47085 * 180.02562 * 24 21 19 48 48 H 1.08999 * 109.47659 * 300.00332 * 24 21 19 49 49 H 1.09004 * 108.89816 * 58.81395 * 25 19 18 50 50 H 1.08998 * 108.89558 * 177.40696 * 25 19 18 51 51 H 1.09006 * 109.62325 * 264.78566 * 26 14 13 52 52 H 1.08995 * 109.63100 * 25.35737 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5966 1.9846 -0.8353 5 6 3.5405 1.4447 -0.1395 6 1 4.1538 1.8865 0.6320 7 6 4.1304 0.8829 -1.2519 8 7 3.3836 0.3455 -2.1915 9 14 5.9904 0.8864 -1.4250 10 1 6.4198 2.1220 -2.1281 11 1 6.6130 0.8419 -0.0776 12 1 6.4169 -0.3018 -2.2069 13 7 1.6645 2.0946 1.2616 14 6 1.6145 3.5544 1.1051 15 1 2.3674 3.8566 0.3771 16 6 0.2227 3.9518 0.5771 17 6 -0.0887 5.4470 0.7800 18 6 1.0916 6.3279 0.4715 19 6 1.8541 6.6027 1.7839 20 1 1.1321 6.7740 2.5823 21 6 2.7055 7.8617 1.6079 22 6 1.7985 9.0489 1.2784 23 6 3.4687 8.1462 2.9030 24 6 3.7013 7.6484 0.4661 25 6 2.7208 5.4969 2.1639 26 6 1.9314 4.1969 2.4284 27 1 -0.3633 -1.0223 -0.1061 28 1 -0.3633 0.4192 0.9382 29 1 -0.3634 0.6029 -0.8322 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.7985 -0.0494 -2.9743 33 1 0.7857 1.7375 1.6056 34 1 0.1723 3.7235 -0.4874 35 1 -0.5322 3.3633 1.0985 36 1 -0.9169 5.7263 0.1287 37 1 -0.3874 5.6077 1.8158 38 1 1.7501 5.8236 -0.2358 39 1 0.7447 7.2679 0.0425 40 1 1.0889 9.2008 2.0919 41 1 2.4049 9.9459 1.1535 42 1 1.2551 8.8459 0.3556 43 1 4.1150 7.3004 3.1373 44 1 4.0750 9.0435 2.7778 45 1 2.7597 8.2980 3.7168 46 1 3.1579 7.4454 -0.4568 47 1 4.3082 8.5452 0.3410 48 1 4.3476 6.8026 0.7007 49 1 3.4378 5.3188 1.3625 50 1 3.2638 5.7690 3.0689 51 1 1.0049 4.4296 2.9536 52 1 2.5358 3.5180 3.0298 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086958196.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:54 Heat of formation + Delta-G solvation = -37.760491 kcal Electronic energy + Delta-G solvation = -24419.807546 eV Core-core repulsion = 21417.595018 eV Total energy + Delta-G solvation = -3002.212527 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.97630 -37.09109 -34.87408 -32.34529 -31.80520 -31.06718 -28.55266 -27.44760 -27.25398 -26.07424 -24.35529 -23.32127 -22.25458 -20.91357 -19.45030 -18.82647 -18.25723 -16.16220 -15.76747 -14.93952 -14.80830 -14.33589 -14.24803 -14.05355 -13.75642 -13.44034 -13.31147 -12.89734 -12.70543 -12.53469 -12.32451 -12.03185 -11.80902 -11.72841 -11.59505 -11.47551 -11.32400 -11.10092 -10.96518 -10.83073 -10.79770 -10.60707 -10.53499 -10.28946 -10.04389 -9.92673 -9.89768 -9.71669 -9.67809 -9.59908 -9.29095 -8.96744 -8.30389 -7.08967 -5.91628 -3.95085 3.34298 3.41077 3.45825 4.48756 4.68872 4.76790 4.87695 5.07403 5.25099 5.25893 5.37244 5.43421 5.55586 5.58264 5.60609 5.66346 5.71872 5.78254 5.80187 5.84236 5.93662 5.97204 6.00843 6.08498 6.11697 6.18482 6.20862 6.21078 6.24882 6.32935 6.35313 6.41500 6.45130 6.49489 6.50766 6.57095 6.66528 6.72540 6.83208 6.89970 6.95782 7.01709 7.17747 7.28052 7.62512 7.84816 7.98814 8.43064 8.48253 8.87258 9.13637 9.69715 11.13669 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.015969 B = 0.005383 C = 0.004464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.973741 B = 5200.163489 C = 6270.482876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.126 4.126 3 C 0.219 3.781 4 H 0.001 0.999 5 C -0.488 4.488 6 H 0.060 0.940 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.891 3.109 10 H -0.283 1.283 11 H -0.274 1.274 12 H -0.288 1.288 13 N -0.684 5.684 14 C 0.095 3.905 15 H 0.079 0.921 16 C -0.142 4.142 17 C -0.110 4.110 18 C -0.117 4.117 19 C -0.066 4.066 20 H 0.061 0.939 21 C -0.068 4.068 22 C -0.142 4.142 23 C -0.144 4.144 24 C -0.146 4.146 25 C -0.120 4.120 26 C -0.102 4.102 27 H 0.035 0.965 28 H 0.034 0.966 29 H 0.041 0.959 30 H 0.098 0.902 31 H 0.039 0.961 32 H 0.258 0.742 33 H 0.314 0.686 34 H 0.055 0.945 35 H 0.050 0.950 36 H 0.048 0.952 37 H 0.055 0.945 38 H 0.069 0.931 39 H 0.062 0.938 40 H 0.050 0.950 41 H 0.048 0.952 42 H 0.059 0.941 43 H 0.061 0.939 44 H 0.049 0.951 45 H 0.051 0.949 46 H 0.057 0.943 47 H 0.047 0.953 48 H 0.061 0.939 49 H 0.067 0.933 50 H 0.057 0.943 51 H 0.048 0.952 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.942 13.629 7.006 16.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.164 4.164 3 C 0.111 3.889 4 H 0.018 0.982 5 C -0.527 4.527 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.719 3.281 10 H -0.210 1.210 11 H -0.199 1.199 12 H -0.214 1.214 13 N -0.314 5.314 14 C -0.015 4.015 15 H 0.097 0.903 16 C -0.181 4.181 17 C -0.148 4.148 18 C -0.154 4.154 19 C -0.085 4.085 20 H 0.079 0.921 21 C -0.068 4.068 22 C -0.200 4.200 23 C -0.201 4.201 24 C -0.203 4.203 25 C -0.158 4.158 26 C -0.140 4.140 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.116 0.884 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.131 0.869 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.068 0.932 45 H 0.070 0.930 46 H 0.076 0.924 47 H 0.066 0.934 48 H 0.080 0.920 49 H 0.086 0.914 50 H 0.076 0.924 51 H 0.067 0.933 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.259 13.507 7.074 15.831 hybrid contribution 0.083 0.009 -0.797 0.801 sum -4.176 13.517 6.277 15.477 Atomic orbital electron populations 1.21872 0.99717 0.99544 0.99461 1.21758 0.91139 1.00631 1.02895 1.19152 0.95219 0.89817 0.84677 0.98187 1.21224 0.91404 1.36073 1.04017 0.92171 1.24944 0.97849 0.95795 0.95964 1.69874 1.34544 1.39777 1.09554 0.86607 0.86153 0.77291 0.78006 1.20956 1.19936 1.21436 1.61030 1.34759 1.02548 1.33014 1.21300 0.94641 0.89298 0.96282 0.90261 1.22697 0.98852 0.95234 1.01340 1.21247 0.97567 0.95198 1.00818 1.21524 0.97301 0.99079 0.97484 1.20076 0.96916 0.94153 0.97341 0.92096 1.20633 0.95479 0.95190 0.95471 1.21953 0.99231 0.97263 1.01507 1.21961 1.00008 1.01325 0.96828 1.21962 0.98813 1.01359 0.98134 1.20702 0.98748 0.94793 1.01549 1.21396 0.99174 0.95608 0.97785 0.94553 0.94650 0.94003 0.88417 0.94183 0.93209 0.86893 0.92637 0.93169 0.93325 0.92642 0.91234 0.91979 0.93041 0.93242 0.92218 0.91993 0.93228 0.93024 0.92351 0.93418 0.92008 0.91444 0.92403 0.93291 0.90870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 9.63 37.16 0.36 -2.55 16 2 C -0.13 -2.98 5.37 -26.73 -0.14 -3.13 16 3 C 0.22 5.40 1.83 -68.86 -0.13 5.27 16 4 H 0.00 0.01 7.36 -51.93 -0.38 -0.37 16 5 C -0.49 -13.42 8.41 -34.44 -0.29 -13.71 16 6 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 7 C 0.05 1.51 5.29 -17.82 -0.09 1.42 16 8 N -0.90 -25.63 11.29 55.43 0.63 -25.00 16 9 Si 0.89 21.63 29.54 -169.99 -5.02 16.60 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 11 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 N -0.68 -14.32 5.87 -101.69 -0.60 -14.91 16 14 C 0.10 1.74 1.79 -68.41 -0.12 1.62 16 15 H 0.08 1.68 6.00 -51.93 -0.31 1.37 16 16 C -0.14 -2.30 5.18 -25.62 -0.13 -2.43 16 17 C -0.11 -1.47 5.31 -27.44 -0.15 -1.61 16 18 C -0.12 -1.50 3.86 -27.34 -0.11 -1.61 16 19 C -0.07 -0.80 1.11 -93.48 -0.10 -0.91 16 20 H 0.06 0.73 7.47 -51.93 -0.39 0.34 16 21 C -0.07 -0.73 0.56 -154.51 -0.09 -0.82 16 22 C -0.14 -1.38 8.19 37.16 0.30 -1.08 16 23 C -0.14 -1.46 7.98 37.16 0.30 -1.17 16 24 C -0.15 -1.70 7.84 37.16 0.29 -1.41 16 25 C -0.12 -1.67 3.98 -29.53 -0.12 -1.79 16 26 C -0.10 -1.60 5.30 -27.27 -0.14 -1.74 16 27 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.03 0.62 6.66 -51.93 -0.35 0.28 16 29 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.10 2.61 5.94 -51.93 -0.31 2.30 16 31 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.26 7.08 8.31 -40.82 -0.34 6.75 16 33 H 0.31 6.12 6.04 -39.29 -0.24 5.88 16 34 H 0.05 1.00 7.75 -51.93 -0.40 0.60 16 35 H 0.05 0.79 7.69 -51.93 -0.40 0.39 16 36 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.05 0.70 6.63 -51.93 -0.34 0.36 16 38 H 0.07 1.04 6.46 -51.93 -0.34 0.70 16 39 H 0.06 0.72 5.63 -51.93 -0.29 0.43 16 40 H 0.05 0.47 8.14 -51.92 -0.42 0.05 16 41 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.58 6.02 -51.93 -0.31 0.27 16 43 H 0.06 0.66 6.27 -51.93 -0.33 0.33 16 44 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.06 0.70 6.89 -51.93 -0.36 0.34 16 47 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.06 0.79 6.49 -51.93 -0.34 0.45 16 49 H 0.07 1.06 5.68 -51.93 -0.30 0.76 16 50 H 0.06 0.75 5.92 -51.93 -0.31 0.44 16 51 H 0.05 0.71 6.97 -51.93 -0.36 0.35 16 52 H 0.07 1.26 7.95 -51.93 -0.41 0.85 16 LS Contribution 364.86 15.07 5.50 5.50 Total: -1.00 -27.30 364.86 -9.66 -36.97 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -9.81 Total: 6.49 kcal Atomic # 6 Polarization: -25.28 SS G_CDS: -0.36 Total: -25.64 kcal Atomic # 7 Polarization: -39.94 SS G_CDS: 0.03 Total: -39.91 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -27.30 -9.66 -36.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086958196.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.795 kcal (2) G-P(sol) polarization free energy of solvation -27.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds