Wall clock time and date at job start Tue Mar 31 2020 05:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52993 * 109.46739 * 2 1 4 4 C 1.52993 * 109.47181 * 120.00043 * 2 1 3 5 5 C 1.53006 * 109.47017 * 65.00031 * 4 2 1 6 6 C 1.53120 * 109.52081 * 185.00121 * 5 4 2 7 7 C 1.53038 * 109.27521 * 182.44168 * 6 5 4 8 8 N 1.46840 * 109.52665 * 59.17870 * 7 6 5 9 9 C 1.46901 * 111.00179 * 174.15955 * 8 7 6 10 10 C 1.52999 * 109.46899 * 94.43181 * 9 8 7 11 11 C 1.52999 * 109.47195 * 66.28800 * 10 9 8 12 12 C 1.53001 * 109.47319 * 306.28503 * 10 9 8 13 13 C 1.53000 * 109.46839 * 186.28575 * 10 9 8 14 14 C 1.50702 * 109.47329 * 179.97438 * 13 10 9 15 15 H 1.08006 * 119.99396 * 0.02562 * 14 13 10 16 16 C 1.37875 * 120.00074 * 179.97438 * 14 13 10 17 17 N 1.31510 * 120.00063 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99619 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47509 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46999 * 120.00110 * 18 16 14 21 21 H 1.48499 * 109.46964 * 239.99935 * 18 16 14 22 22 C 1.46844 * 111.19791 * 298.25796 * 8 7 6 23 23 C 1.53037 * 109.52373 * 61.74097 * 22 8 7 24 24 H 1.08998 * 109.47283 * 60.00028 * 1 2 3 25 25 H 1.09004 * 109.47061 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46873 * 299.99870 * 1 2 3 27 27 H 1.08997 * 109.46873 * 240.00130 * 2 1 3 28 28 H 1.09006 * 109.47226 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.47780 * 299.99660 * 3 2 1 30 30 H 1.09000 * 109.47759 * 60.00158 * 3 2 1 31 31 H 1.09003 * 109.47408 * 305.00345 * 4 2 1 32 32 H 1.08998 * 109.47204 * 185.00128 * 4 2 1 33 33 H 1.09004 * 109.51964 * 305.12422 * 5 4 2 34 34 H 1.08999 * 109.50807 * 62.50050 * 6 5 4 35 35 H 1.08999 * 109.50550 * 302.37961 * 6 5 4 36 36 H 1.09004 * 109.46249 * 299.16121 * 7 6 5 37 37 H 1.09004 * 109.45426 * 179.19018 * 7 6 5 38 38 H 1.09001 * 109.47147 * 334.42955 * 9 8 7 39 39 H 1.09004 * 109.46948 * 214.42818 * 9 8 7 40 40 H 1.09000 * 109.46891 * 137.22372 * 11 10 9 41 41 H 1.09004 * 109.47200 * 257.21976 * 11 10 9 42 42 H 1.08995 * 109.47252 * 17.21806 * 11 10 9 43 43 H 1.09002 * 109.46305 * 343.93169 * 12 10 9 44 44 H 1.08995 * 109.46951 * 103.93507 * 12 10 9 45 45 H 1.08998 * 109.46794 * 223.93624 * 12 10 9 46 46 H 1.08998 * 109.47607 * 59.99979 * 13 10 9 47 47 H 1.09008 * 109.47392 * 299.99607 * 13 10 9 48 48 H 0.97002 * 119.99447 * 179.97438 * 17 16 14 49 49 H 1.09006 * 109.46850 * 181.75589 * 22 8 7 50 50 H 1.09005 * 109.46553 * 301.72427 * 22 8 7 51 51 H 1.09002 * 109.50386 * 180.88155 * 23 22 8 52 52 H 1.09000 * 109.50570 * 60.76248 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6353 -2.1955 1.1879 6 6 2.0352 -2.8906 2.4923 7 6 1.6832 -4.3771 2.4011 8 7 2.3930 -4.9809 1.2663 9 6 2.1882 -6.4351 1.2306 10 6 1.0175 -6.7626 0.3015 11 6 1.3910 -6.3991 -1.1370 12 6 -0.2124 -5.9585 0.7278 13 6 0.7033 -8.2576 0.3846 14 6 -0.4501 -8.5802 -0.5301 15 1 -0.9125 -7.7971 -1.1127 16 6 -0.9144 -9.8750 -0.6238 17 7 -0.3510 -10.8286 0.0853 18 14 -2.3437 -10.2748 -1.7582 19 1 -2.7962 -9.0357 -2.4401 20 1 -1.9074 -11.2668 -2.7735 21 1 -3.4634 -10.8400 -0.9632 22 6 1.9898 -4.3614 -0.0026 23 6 2.3510 -2.8743 0.0168 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4426 -0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6054 -0.2618 2.1370 32 1 3.1264 -0.6443 1.2951 33 1 0.5566 -2.2716 1.0504 34 1 1.4961 -2.4394 3.3253 35 1 3.1081 -2.7797 2.6497 36 1 0.6083 -4.4877 2.2576 37 1 1.9799 -4.8776 3.3229 38 1 1.9667 -6.7956 2.2351 39 1 3.0918 -6.9203 0.8614 40 1 1.0582 -7.1897 -1.8096 41 1 0.9083 -5.4612 -1.4118 42 1 2.4724 -6.2875 -1.2145 43 1 -0.0618 -5.5715 1.7356 44 1 -0.3604 -5.1278 0.0378 45 1 -1.0909 -6.6035 0.7137 46 1 0.4373 -8.5167 1.4094 47 1 1.5795 -8.8306 0.0808 48 1 -0.6779 -11.7395 0.0195 49 1 2.5090 -4.8505 -0.8268 50 1 0.9135 -4.4720 -0.1349 51 1 2.0374 -2.4115 -0.9189 52 1 3.4288 -2.7631 0.1352 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092021422.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:14 Heat of formation + Delta-G solvation = 3.512577 kcal Electronic energy + Delta-G solvation = -24108.532543 eV Core-core repulsion = 21108.109750 eV Total energy + Delta-G solvation = -3000.422793 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.18937 -37.66713 -35.22184 -32.90403 -31.73176 -30.77903 -28.01989 -27.33674 -27.14474 -26.71451 -25.20205 -22.98667 -22.41934 -21.45688 -19.90309 -19.24856 -18.16878 -16.13895 -15.56547 -15.25760 -15.13578 -14.74807 -14.50655 -14.25706 -13.97789 -13.77128 -13.51220 -12.86601 -12.77728 -12.68600 -12.43253 -12.25300 -12.12523 -11.99181 -11.69510 -11.37298 -11.26451 -11.12715 -11.03289 -10.88718 -10.73799 -10.68399 -10.45140 -10.38899 -10.32861 -10.29903 -9.99712 -9.84902 -9.63889 -9.56714 -9.10994 -8.96426 -8.33901 -7.50845 -5.97946 -3.98265 3.30509 3.38668 3.41885 4.39480 4.47413 4.59419 4.71319 4.78754 5.00061 5.10212 5.20958 5.37385 5.39834 5.44706 5.46813 5.50699 5.58045 5.63485 5.65337 5.70517 5.75093 5.78102 5.81030 5.87900 5.89570 5.96392 5.99888 6.07430 6.16142 6.16307 6.21970 6.26997 6.31267 6.33814 6.38427 6.45652 6.49892 6.55718 6.62315 6.72699 6.80697 7.06752 7.22433 7.33896 7.60301 7.62613 7.71761 7.84682 8.01378 8.46245 9.07652 9.64465 11.13276 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.026143 B = 0.003748 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.764219 B = 7468.377759 C = 8018.407673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.100 4.100 3 C -0.147 4.147 4 C -0.107 4.107 5 C -0.089 4.089 6 C -0.109 4.109 7 C 0.038 3.962 8 N -0.533 5.533 9 C 0.063 3.937 10 C -0.086 4.086 11 C -0.143 4.143 12 C -0.154 4.154 13 C 0.037 3.963 14 C -0.507 4.507 15 H 0.058 0.942 16 C 0.055 3.945 17 N -0.896 5.896 18 Si 0.886 3.114 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.285 1.285 22 C 0.012 3.988 23 C -0.114 4.114 24 H 0.050 0.950 25 H 0.059 0.941 26 H 0.051 0.949 27 H 0.073 0.927 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.052 0.948 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.047 0.953 42 H 0.045 0.955 43 H 0.050 0.950 44 H 0.045 0.955 45 H 0.071 0.929 46 H 0.013 0.987 47 H 0.015 0.985 48 H 0.258 0.742 49 H 0.093 0.907 50 H 0.068 0.932 51 H 0.060 0.940 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.658 20.559 2.055 21.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.118 4.118 3 C -0.204 4.204 4 C -0.145 4.145 5 C -0.108 4.108 6 C -0.146 4.146 7 C -0.090 4.090 8 N -0.256 5.256 9 C -0.065 4.065 10 C -0.087 4.087 11 C -0.199 4.199 12 C -0.210 4.210 13 C -0.001 4.001 14 C -0.546 4.546 15 H 0.076 0.924 16 C -0.146 4.146 17 N -0.536 5.536 18 Si 0.714 3.286 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.212 1.212 22 C -0.114 4.114 23 C -0.152 4.152 24 H 0.069 0.931 25 H 0.078 0.922 26 H 0.070 0.930 27 H 0.091 0.909 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.069 0.931 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.069 0.931 44 H 0.063 0.937 45 H 0.090 0.910 46 H 0.031 0.969 47 H 0.033 0.967 48 H 0.068 0.932 49 H 0.111 0.889 50 H 0.086 0.914 51 H 0.078 0.922 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.161 20.473 2.164 21.224 hybrid contribution -1.636 -0.575 -0.641 1.849 sum 3.525 19.898 1.523 20.265 Atomic orbital electron populations 1.21891 0.95439 1.02020 1.01269 1.21164 0.95832 0.95773 0.99038 1.21844 1.00797 0.96359 1.01410 1.21671 1.00583 0.94965 0.97233 1.21251 1.00113 0.93783 0.95630 1.21613 1.01490 0.94894 0.96647 1.22494 0.97614 0.94487 0.94411 1.62213 1.56586 1.04101 1.02737 1.22441 0.97912 0.86559 0.99583 1.21119 0.93575 0.99779 0.94228 1.22668 0.99055 1.00849 0.97376 1.22584 0.99987 0.99026 0.99398 1.19169 0.96425 0.87588 0.96890 1.21251 1.15629 0.93284 1.24399 0.92401 1.25018 0.96923 0.96675 0.95957 1.69976 1.41586 1.00935 1.41070 0.86627 0.82717 0.78351 0.80860 1.19811 1.21132 1.21166 1.23597 1.01336 0.93339 0.93176 1.21767 1.00395 0.95761 0.97258 0.93098 0.92213 0.92994 0.90912 0.92879 0.92993 0.92962 0.92411 0.92161 0.91387 0.92396 0.91708 0.93063 0.91592 0.92143 0.91421 0.91627 0.93406 0.93597 0.93107 0.93658 0.91020 0.96875 0.96676 0.93188 0.88915 0.91427 0.92187 0.92020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 8.96 37.16 0.33 -0.98 16 2 C -0.10 -0.87 2.79 -90.62 -0.25 -1.13 16 3 C -0.15 -1.13 9.19 37.15 0.34 -0.79 16 4 C -0.11 -1.00 4.15 -26.73 -0.11 -1.11 16 5 C -0.09 -0.97 2.12 -90.50 -0.19 -1.16 16 6 C -0.11 -1.25 5.38 -26.65 -0.14 -1.40 16 7 C 0.04 0.52 4.87 -3.84 -0.02 0.50 16 8 N -0.53 -8.10 4.86 -234.67 -1.14 -9.24 16 9 C 0.06 1.10 4.81 -3.82 -0.02 1.08 16 10 C -0.09 -1.68 0.52 -154.51 -0.08 -1.76 16 11 C -0.14 -2.64 6.97 37.16 0.26 -2.38 16 12 C -0.15 -2.85 7.43 37.16 0.28 -2.58 16 13 C 0.04 0.92 3.92 -27.88 -0.11 0.81 16 14 C -0.51 -13.75 6.69 -34.44 -0.23 -13.98 16 15 H 0.06 1.54 6.85 -52.48 -0.36 1.18 16 16 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 17 N -0.90 -26.71 13.29 55.43 0.74 -25.97 16 18 Si 0.89 21.52 29.54 -169.99 -5.02 16.49 16 19 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 C 0.01 0.17 3.31 -3.84 -0.01 0.16 16 23 C -0.11 -1.36 5.08 -26.65 -0.14 -1.50 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.57 6.46 -51.93 -0.34 0.24 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.68 6.41 -51.93 -0.33 0.34 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.79 6.34 -51.93 -0.33 0.46 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.05 0.75 4.78 -51.93 -0.25 0.50 16 37 H 0.07 0.90 7.91 -51.93 -0.41 0.49 16 38 H 0.06 1.08 7.57 -51.93 -0.39 0.69 16 39 H 0.07 1.22 8.01 -51.93 -0.42 0.81 16 40 H 0.06 1.38 6.52 -51.93 -0.34 1.05 16 41 H 0.05 0.79 5.17 -51.93 -0.27 0.53 16 42 H 0.05 0.78 5.93 -51.93 -0.31 0.48 16 43 H 0.05 0.87 4.22 -51.93 -0.22 0.65 16 44 H 0.04 0.77 5.34 -51.93 -0.28 0.50 16 45 H 0.07 1.52 6.54 -51.93 -0.34 1.18 16 46 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.01 0.40 8.14 -51.92 -0.42 -0.02 16 48 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 49 H 0.09 1.39 4.72 -51.93 -0.24 1.15 16 50 H 0.07 1.04 2.94 -51.93 -0.15 0.89 16 51 H 0.06 0.67 6.60 -51.93 -0.34 0.32 16 52 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 358.99 15.07 5.41 5.41 Total: -1.00 -28.10 358.99 -9.73 -37.84 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -9.53 Total: 0.22 kcal Atomic # 6 Polarization: -24.55 SS G_CDS: -0.19 Total: -24.74 kcal Atomic # 7 Polarization: -34.81 SS G_CDS: -0.40 Total: -35.21 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -28.10 -9.73 -37.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092021422.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.349 kcal (2) G-P(sol) polarization free energy of solvation -28.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds