Wall clock time and date at job start Tue Mar 31 2020 05:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47232 * 2 1 4 4 C 1.53006 * 109.46987 * 120.00011 * 2 1 3 5 5 H 1.08999 * 109.57048 * 302.26525 * 4 2 1 6 6 C 1.54514 * 109.56904 * 182.01507 * 4 2 1 7 7 C 1.45878 * 111.67652 * 162.94195 * 6 4 2 8 8 C 1.53985 * 112.65987 * 61.49149 * 7 6 4 9 9 N 1.44298 * 108.35667 * 278.59073 * 8 7 6 10 10 C 1.46904 * 111.00322 * 221.36895 * 9 8 7 11 11 C 1.53001 * 109.46959 * 81.40031 * 10 9 8 12 12 C 1.53000 * 109.47066 * 294.60086 * 11 10 9 13 13 C 1.53002 * 109.46938 * 54.59920 * 11 10 9 14 14 C 1.52995 * 109.46883 * 174.59530 * 11 10 9 15 15 C 1.50697 * 109.46870 * 179.97438 * 14 11 10 16 16 H 1.08002 * 120.00247 * 0.02562 * 15 14 11 17 17 C 1.37883 * 120.00061 * 180.02562 * 15 14 11 18 18 N 1.31511 * 119.99536 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00238 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46939 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.46955 * 119.99559 * 19 17 15 22 22 H 1.48495 * 109.47052 * 240.00364 * 19 17 15 23 23 C 1.47988 * 113.62559 * 95.34638 * 9 8 7 24 24 C 1.50536 * 109.57290 * 62.63855 * 4 2 1 25 25 H 1.09001 * 109.46880 * 299.51500 * 1 2 3 26 26 H 1.08999 * 109.47111 * 59.51228 * 1 2 3 27 27 H 1.08997 * 109.47121 * 179.51959 * 1 2 3 28 28 H 1.08997 * 109.46796 * 239.99983 * 2 1 3 29 29 H 1.08995 * 109.47444 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47318 * 300.00593 * 3 2 1 31 31 H 1.09008 * 109.47486 * 59.99865 * 3 2 1 32 32 H 1.08996 * 109.04544 * 42.37189 * 6 4 2 33 33 H 1.09009 * 108.98106 * 283.46010 * 6 4 2 34 34 H 1.09003 * 108.83985 * 300.67916 * 7 6 4 35 35 H 1.08995 * 108.85129 * 182.31723 * 7 6 4 36 36 H 1.08999 * 109.69458 * 38.32579 * 8 7 6 37 37 H 1.09005 * 109.69276 * 158.86500 * 8 7 6 38 38 H 1.08997 * 109.46867 * 201.40102 * 10 9 8 39 39 H 1.08997 * 109.46621 * 321.40078 * 10 9 8 40 40 H 1.08996 * 109.47200 * 67.04459 * 12 11 10 41 41 H 1.08999 * 109.46749 * 187.04775 * 12 11 10 42 42 H 1.09005 * 109.46817 * 307.04385 * 12 11 10 43 43 H 1.08998 * 109.47275 * 59.99549 * 13 11 10 44 44 H 1.09002 * 109.46907 * 179.97438 * 13 11 10 45 45 H 1.09001 * 109.46789 * 299.99789 * 13 11 10 46 46 H 1.08991 * 109.47706 * 300.00008 * 14 11 10 47 47 H 1.09005 * 109.46826 * 60.00487 * 14 11 10 48 48 H 0.97004 * 119.99360 * 180.02562 * 18 17 15 49 49 H 1.09000 * 108.71479 * 197.18446 * 23 9 8 50 50 H 1.08998 * 108.57776 * 79.12297 * 23 9 8 51 51 H 1.09005 * 108.79165 * 332.46178 * 24 4 2 52 52 H 1.09002 * 108.78710 * 90.78471 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6448 -0.2327 2.1399 6 6 3.5843 -0.6784 1.2775 7 6 4.1076 -0.9828 2.6047 8 6 3.7268 -2.3962 3.0828 9 7 2.3834 -2.3517 3.6077 10 6 2.2708 -3.1512 4.8350 11 6 2.7823 -2.3351 6.0238 12 6 4.2807 -2.0746 5.8567 13 6 2.0363 -1.0007 6.0851 14 6 2.5412 -3.1140 7.3184 15 6 3.0456 -2.3105 8.4893 16 1 3.4929 -1.3411 8.3265 17 6 2.9360 -2.8130 9.7686 18 7 2.3917 -3.9937 9.9669 19 14 3.5605 -1.8168 11.2202 20 1 4.1242 -0.5322 10.7330 21 1 2.4373 -1.5421 12.1519 22 1 4.6159 -2.5837 11.9295 23 6 1.3489 -2.7401 2.6233 24 6 1.5935 -2.1586 1.2194 25 1 -0.3633 0.5063 0.8943 26 1 -0.3633 0.5214 -0.8856 27 1 -0.3633 -1.0276 -0.0086 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.6767 1.9564 0.8900 32 1 3.9179 0.3166 0.9833 33 1 3.9722 -1.4080 0.5664 34 1 3.7151 -0.2537 3.3136 35 1 5.1942 -0.8996 2.5824 36 1 3.7710 -3.0918 2.2448 37 1 4.4158 -2.7178 3.8638 38 1 1.2271 -3.4186 4.9999 39 1 2.8667 -4.0582 4.7335 40 1 4.4419 -1.4149 5.0041 41 1 4.6704 -1.6038 6.7592 42 1 4.7971 -3.0195 5.6878 43 1 0.9689 -1.1863 6.2041 44 1 2.4004 -0.4195 6.9324 45 1 2.2080 -0.4458 5.1627 46 1 1.4739 -3.2996 7.4375 47 1 3.0727 -4.0647 7.2747 48 1 2.3143 -4.3471 10.8670 49 1 0.3788 -2.3946 2.9807 50 1 1.3276 -3.8275 2.5525 51 1 0.6696 -2.2274 0.6450 52 1 2.3598 -2.7540 0.7231 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093440708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:37 Heat of formation + Delta-G solvation = -27.133237 kcal Electronic energy + Delta-G solvation = -24191.817085 eV Core-core repulsion = 21190.065390 eV Total energy + Delta-G solvation = -3001.751695 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.76607 -37.49218 -35.08383 -33.12963 -32.29127 -31.07346 -27.88158 -27.01712 -26.69748 -26.19238 -24.93531 -23.97957 -22.38464 -21.03725 -19.98499 -19.30283 -17.85174 -16.15864 -16.09250 -15.35943 -14.97288 -14.64357 -14.35602 -14.16467 -13.85844 -13.46888 -13.35035 -12.91879 -12.81694 -12.57009 -12.42216 -12.22870 -11.97078 -11.78295 -11.72155 -11.63909 -11.33780 -10.99739 -10.88389 -10.78534 -10.67631 -10.61726 -10.47367 -10.38727 -10.32505 -10.23307 -10.08600 -9.95031 -9.85553 -9.51487 -8.88503 -8.75824 -8.27742 -7.70538 -5.92309 -3.91698 3.34917 3.42688 3.46469 4.22608 4.52929 4.58542 4.71761 4.81854 4.95245 5.16061 5.25269 5.35856 5.40186 5.43733 5.50097 5.52017 5.60873 5.66025 5.68227 5.73511 5.82248 5.84124 5.87311 5.92825 5.96864 6.03307 6.07686 6.13687 6.17668 6.23218 6.26884 6.35074 6.37013 6.42206 6.47603 6.52762 6.62786 6.69142 6.81233 6.89140 6.95169 7.31652 7.35546 7.36937 7.60807 7.69915 7.77322 7.93046 8.08992 8.54351 9.14149 9.70796 11.19491 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.029042 B = 0.003690 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.886287 B = 7585.794852 C = 7702.357194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.092 4.092 3 C -0.149 4.149 4 C -0.073 4.073 5 H 0.083 0.917 6 C -0.111 4.111 7 C -0.115 4.115 8 C 0.052 3.948 9 N -0.539 5.539 10 C 0.070 3.930 11 C -0.051 4.051 12 C -0.135 4.135 13 C -0.112 4.112 14 C 0.033 3.967 15 C -0.503 4.503 16 H 0.060 0.940 17 C 0.053 3.947 18 N -0.898 5.898 19 Si 0.886 3.114 20 H -0.273 1.273 21 H -0.286 1.286 22 H -0.286 1.286 23 C 0.064 3.936 24 C -0.116 4.116 25 H 0.056 0.944 26 H 0.049 0.951 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.048 0.952 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.048 0.952 34 H 0.073 0.927 35 H 0.052 0.948 36 H 0.029 0.971 37 H 0.085 0.915 38 H 0.062 0.938 39 H 0.029 0.971 40 H 0.048 0.952 41 H 0.061 0.939 42 H 0.035 0.965 43 H 0.035 0.965 44 H 0.051 0.949 45 H 0.045 0.955 46 H 0.013 0.987 47 H 0.011 0.989 48 H 0.257 0.743 49 H 0.067 0.933 50 H 0.024 0.976 51 H 0.068 0.932 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.552 6.225 -20.767 21.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.111 4.111 3 C -0.206 4.206 4 C -0.092 4.092 5 H 0.102 0.898 6 C -0.148 4.148 7 C -0.153 4.153 8 C -0.077 4.077 9 N -0.263 5.263 10 C -0.057 4.057 11 C -0.052 4.052 12 C -0.192 4.192 13 C -0.170 4.170 14 C -0.005 4.005 15 C -0.541 4.541 16 H 0.078 0.922 17 C -0.147 4.147 18 N -0.539 5.539 19 Si 0.715 3.285 20 H -0.198 1.198 21 H -0.212 1.212 22 H -0.212 1.212 23 C -0.064 4.064 24 C -0.154 4.154 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.092 0.908 35 H 0.071 0.929 36 H 0.047 0.953 37 H 0.103 0.897 38 H 0.080 0.920 39 H 0.047 0.953 40 H 0.067 0.933 41 H 0.080 0.920 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.070 0.930 45 H 0.064 0.936 46 H 0.031 0.969 47 H 0.029 0.971 48 H 0.067 0.933 49 H 0.085 0.915 50 H 0.042 0.958 51 H 0.086 0.914 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.684 6.560 -20.532 21.566 hybrid contribution 0.409 -0.558 0.721 0.999 sum -0.274 6.003 -19.811 20.702 Atomic orbital electron populations 1.21913 0.95536 1.01675 1.01520 1.21158 0.95457 0.96096 0.98352 1.21916 1.01187 0.96096 1.01418 1.20925 0.95170 0.95188 0.97884 0.89844 1.20706 0.95280 1.01116 0.97691 1.20486 0.99288 0.98270 0.97227 1.22136 0.90844 0.95934 0.98742 1.60681 1.03323 1.57005 1.05324 1.22299 1.00353 0.93776 0.89280 1.20549 0.94351 0.95920 0.94350 1.22036 0.96383 0.99710 1.01102 1.21555 0.98668 0.96760 0.99975 1.19130 0.96649 0.94753 0.89953 1.21291 1.38298 1.03466 0.91071 0.92223 1.25019 0.95717 0.94998 0.98940 1.69983 1.45280 1.17442 1.21168 0.86624 0.78505 0.80376 0.83039 1.19766 1.21203 1.21238 1.22364 0.95767 0.96792 0.91429 1.21526 1.01305 0.96344 0.96228 0.92529 0.93215 0.92451 0.91870 0.92299 0.93296 0.92601 0.92073 0.93281 0.90840 0.92949 0.95271 0.89704 0.91980 0.95305 0.93332 0.92037 0.94601 0.94620 0.93046 0.93597 0.96861 0.97084 0.93300 0.91462 0.95763 0.91400 0.92891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 8.95 37.16 0.33 -0.93 16 2 C -0.09 -0.82 2.47 -90.62 -0.22 -1.04 16 3 C -0.15 -1.26 8.85 37.15 0.33 -0.93 16 4 C -0.07 -0.76 1.47 -91.05 -0.13 -0.89 16 5 H 0.08 1.03 7.80 -51.93 -0.40 0.63 16 6 C -0.11 -1.15 4.66 -29.31 -0.14 -1.29 16 7 C -0.11 -1.38 4.51 -29.59 -0.13 -1.52 16 8 C 0.05 0.70 4.25 -4.70 -0.02 0.68 16 9 N -0.54 -7.86 2.90 -234.60 -0.68 -8.54 16 10 C 0.07 1.23 4.12 -3.82 -0.02 1.21 16 11 C -0.05 -1.03 0.61 -154.51 -0.09 -1.12 16 12 C -0.14 -2.57 6.76 37.16 0.25 -2.32 16 13 C -0.11 -2.20 8.00 37.16 0.30 -1.90 16 14 C 0.03 0.83 4.04 -27.89 -0.11 0.72 16 15 C -0.50 -13.88 7.56 -34.44 -0.26 -14.14 16 16 H 0.06 1.61 5.71 -52.49 -0.30 1.31 16 17 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 18 N -0.90 -27.11 13.29 55.43 0.74 -26.38 16 19 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 20 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 C 0.06 0.82 5.25 -2.75 -0.01 0.80 16 24 C -0.12 -1.23 4.71 -27.49 -0.13 -1.36 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.47 6.13 -51.93 -0.32 0.16 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.49 6.04 -51.93 -0.31 0.17 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.50 8.14 -51.92 -0.42 0.07 16 32 H 0.06 0.59 5.62 -51.93 -0.29 0.30 16 33 H 0.05 0.50 7.58 -51.92 -0.39 0.11 16 34 H 0.07 1.00 7.73 -51.93 -0.40 0.60 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.03 0.38 6.79 -51.93 -0.35 0.03 16 37 H 0.08 1.26 4.40 -51.93 -0.23 1.03 16 38 H 0.06 1.12 7.81 -51.93 -0.41 0.71 16 39 H 0.03 0.52 7.83 -51.93 -0.41 0.11 16 40 H 0.05 0.80 4.96 -51.93 -0.26 0.54 16 41 H 0.06 1.29 6.42 -51.93 -0.33 0.95 16 42 H 0.03 0.66 7.51 -51.93 -0.39 0.27 16 43 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.05 1.08 6.62 -51.93 -0.34 0.74 16 45 H 0.05 0.81 7.44 -51.93 -0.39 0.43 16 46 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 48 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 49 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 50 H 0.02 0.31 8.02 -51.93 -0.42 -0.10 16 51 H 0.07 0.64 5.60 -51.93 -0.29 0.35 16 52 H 0.05 0.57 6.65 -51.93 -0.35 0.22 16 LS Contribution 365.08 15.07 5.50 5.50 Total: -1.00 -28.52 365.08 -9.57 -38.09 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -9.94 Total: -2.85 kcal Atomic # 6 Polarization: -22.43 SS G_CDS: -0.16 Total: -22.59 kcal Atomic # 7 Polarization: -34.98 SS G_CDS: 0.06 Total: -34.92 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -28.52 -9.57 -38.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093440708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.956 kcal (2) G-P(sol) polarization free energy of solvation -28.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds