Wall clock time and date at job start Tue Mar 31 2020 05:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47232 * 2 1 4 4 C 1.53006 * 109.46987 * 120.00011 * 2 1 3 5 5 H 1.08999 * 109.57048 * 302.26525 * 4 2 1 6 6 C 1.54514 * 109.56904 * 182.01507 * 4 2 1 7 7 C 1.45878 * 111.67652 * 162.94195 * 6 4 2 8 8 C 1.53985 * 112.65987 * 61.49149 * 7 6 4 9 9 N 1.44298 * 108.35667 * 278.59073 * 8 7 6 10 10 C 1.46904 * 111.00322 * 221.36895 * 9 8 7 11 11 C 1.53001 * 109.46959 * 81.40031 * 10 9 8 12 12 C 1.53000 * 109.47066 * 294.60086 * 11 10 9 13 13 C 1.53002 * 109.46938 * 54.59920 * 11 10 9 14 14 C 1.52995 * 109.46883 * 174.59530 * 11 10 9 15 15 C 1.50697 * 109.46870 * 179.97438 * 14 11 10 16 16 H 1.08002 * 120.00247 * 0.02562 * 15 14 11 17 17 C 1.37883 * 120.00061 * 180.02562 * 15 14 11 18 18 N 1.31511 * 119.99536 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00238 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46939 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.46955 * 119.99559 * 19 17 15 22 22 H 1.48495 * 109.47052 * 240.00364 * 19 17 15 23 23 C 1.47988 * 113.62559 * 95.34638 * 9 8 7 24 24 C 1.50536 * 109.57290 * 62.63855 * 4 2 1 25 25 H 1.09001 * 109.46880 * 299.51500 * 1 2 3 26 26 H 1.08999 * 109.47111 * 59.51228 * 1 2 3 27 27 H 1.08997 * 109.47121 * 179.51959 * 1 2 3 28 28 H 1.08997 * 109.46796 * 239.99983 * 2 1 3 29 29 H 1.08995 * 109.47444 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47318 * 300.00593 * 3 2 1 31 31 H 1.09008 * 109.47486 * 59.99865 * 3 2 1 32 32 H 1.08996 * 109.04544 * 42.37189 * 6 4 2 33 33 H 1.09009 * 108.98106 * 283.46010 * 6 4 2 34 34 H 1.09003 * 108.83985 * 300.67916 * 7 6 4 35 35 H 1.08995 * 108.85129 * 182.31723 * 7 6 4 36 36 H 1.08999 * 109.69458 * 38.32579 * 8 7 6 37 37 H 1.09005 * 109.69276 * 158.86500 * 8 7 6 38 38 H 1.08997 * 109.46867 * 201.40102 * 10 9 8 39 39 H 1.08997 * 109.46621 * 321.40078 * 10 9 8 40 40 H 1.08996 * 109.47200 * 67.04459 * 12 11 10 41 41 H 1.08999 * 109.46749 * 187.04775 * 12 11 10 42 42 H 1.09005 * 109.46817 * 307.04385 * 12 11 10 43 43 H 1.08998 * 109.47275 * 59.99549 * 13 11 10 44 44 H 1.09002 * 109.46907 * 179.97438 * 13 11 10 45 45 H 1.09001 * 109.46789 * 299.99789 * 13 11 10 46 46 H 1.08991 * 109.47706 * 300.00008 * 14 11 10 47 47 H 1.09005 * 109.46826 * 60.00487 * 14 11 10 48 48 H 0.97004 * 119.99360 * 180.02562 * 18 17 15 49 49 H 1.09000 * 108.71479 * 197.18446 * 23 9 8 50 50 H 1.08998 * 108.57776 * 79.12297 * 23 9 8 51 51 H 1.09005 * 108.79165 * 332.46178 * 24 4 2 52 52 H 1.09002 * 108.78710 * 90.78471 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6448 -0.2327 2.1399 6 6 3.5843 -0.6784 1.2775 7 6 4.1076 -0.9828 2.6047 8 6 3.7268 -2.3962 3.0828 9 7 2.3834 -2.3517 3.6077 10 6 2.2708 -3.1512 4.8350 11 6 2.7823 -2.3351 6.0238 12 6 4.2807 -2.0746 5.8567 13 6 2.0363 -1.0007 6.0851 14 6 2.5412 -3.1140 7.3184 15 6 3.0456 -2.3105 8.4893 16 1 3.4929 -1.3411 8.3265 17 6 2.9360 -2.8130 9.7686 18 7 2.3917 -3.9937 9.9669 19 14 3.5605 -1.8168 11.2202 20 1 4.1242 -0.5322 10.7330 21 1 2.4373 -1.5421 12.1519 22 1 4.6159 -2.5837 11.9295 23 6 1.3489 -2.7401 2.6233 24 6 1.5935 -2.1586 1.2194 25 1 -0.3633 0.5063 0.8943 26 1 -0.3633 0.5214 -0.8856 27 1 -0.3633 -1.0276 -0.0086 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.6767 1.9564 0.8900 32 1 3.9179 0.3166 0.9833 33 1 3.9722 -1.4080 0.5664 34 1 3.7151 -0.2537 3.3136 35 1 5.1942 -0.8996 2.5824 36 1 3.7710 -3.0918 2.2448 37 1 4.4158 -2.7178 3.8638 38 1 1.2271 -3.4186 4.9999 39 1 2.8667 -4.0582 4.7335 40 1 4.4419 -1.4149 5.0041 41 1 4.6704 -1.6038 6.7592 42 1 4.7971 -3.0195 5.6878 43 1 0.9689 -1.1863 6.2041 44 1 2.4004 -0.4195 6.9324 45 1 2.2080 -0.4458 5.1627 46 1 1.4739 -3.2996 7.4375 47 1 3.0727 -4.0647 7.2747 48 1 2.3143 -4.3471 10.8670 49 1 0.3788 -2.3946 2.9807 50 1 1.3276 -3.8275 2.5525 51 1 0.6696 -2.2274 0.6450 52 1 2.3598 -2.7540 0.7231 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093440708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:36 Heat of formation + Delta-G solvation = -40.135997 kcal Electronic energy + Delta-G solvation = -24192.380927 eV Core-core repulsion = 21190.065390 eV Total energy + Delta-G solvation = -3002.315537 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.84107 -38.74905 -36.40978 -34.45880 -33.94895 -32.13953 -28.99697 -28.85284 -27.84202 -27.61892 -26.00892 -25.43188 -24.09275 -21.85705 -20.91484 -20.23161 -19.53630 -18.29844 -17.18462 -16.51548 -16.42220 -15.92018 -15.36739 -15.28009 -15.15011 -14.75842 -14.43060 -14.29481 -14.16647 -13.98849 -13.86331 -13.37987 -13.19351 -12.94285 -12.77623 -12.75707 -12.63630 -12.48177 -12.31036 -12.24490 -12.09124 -12.01528 -11.98509 -11.62240 -11.56030 -11.48313 -11.27437 -11.20280 -10.89341 -10.80801 -10.78570 -10.52631 -10.49929 -8.92633 -8.13141 -6.19739 1.40117 1.41037 1.53462 2.44234 3.05079 3.20714 3.75688 3.92656 4.02452 4.09601 4.19780 4.24151 4.27871 4.36005 4.44105 4.50819 4.57060 4.68217 4.72601 4.75620 4.83124 4.87276 4.90759 4.92797 4.98404 5.00344 5.03215 5.06007 5.10756 5.13609 5.23603 5.25232 5.28466 5.30911 5.34541 5.39340 5.48987 5.51475 5.54128 5.57052 5.59741 5.63255 5.69156 5.73157 5.82473 5.91720 5.95557 6.25845 6.42499 6.54639 6.95537 7.47359 8.99456 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.029042 B = 0.003690 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.886287 B = 7585.794852 C = 7702.357194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.088 4.088 3 C -0.148 4.148 4 C -0.069 4.069 5 H 0.063 0.937 6 C -0.109 4.109 7 C -0.108 4.108 8 C 0.050 3.950 9 N -0.538 5.538 10 C 0.081 3.919 11 C -0.047 4.047 12 C -0.125 4.125 13 C -0.101 4.101 14 C 0.040 3.960 15 C -0.511 4.511 16 H 0.065 0.935 17 C -0.005 4.005 18 N -0.939 5.939 19 Si 0.956 3.044 20 H -0.261 1.261 21 H -0.282 1.282 22 H -0.282 1.282 23 C 0.062 3.938 24 C -0.109 4.109 25 H 0.046 0.954 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.071 0.929 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.047 0.953 32 H 0.072 0.928 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.038 0.962 37 H 0.071 0.929 38 H 0.052 0.948 39 H 0.022 0.978 40 H 0.076 0.924 41 H 0.040 0.960 42 H 0.034 0.966 43 H 0.026 0.974 44 H 0.034 0.966 45 H 0.068 0.932 46 H -0.018 1.018 47 H -0.019 1.019 48 H 0.259 0.741 49 H 0.062 0.938 50 H 0.022 0.978 51 H 0.081 0.919 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.166 7.765 -22.636 23.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.106 4.106 3 C -0.205 4.205 4 C -0.088 4.088 5 H 0.081 0.919 6 C -0.146 4.146 7 C -0.146 4.146 8 C -0.078 4.078 9 N -0.262 5.262 10 C -0.047 4.047 11 C -0.048 4.048 12 C -0.182 4.182 13 C -0.158 4.158 14 C 0.003 3.997 15 C -0.549 4.549 16 H 0.083 0.917 17 C -0.201 4.201 18 N -0.580 5.580 19 Si 0.781 3.219 20 H -0.185 1.185 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.065 4.065 24 C -0.147 4.147 25 H 0.066 0.934 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.056 0.944 37 H 0.090 0.910 38 H 0.071 0.929 39 H 0.040 0.960 40 H 0.094 0.906 41 H 0.059 0.941 42 H 0.053 0.947 43 H 0.045 0.955 44 H 0.053 0.947 45 H 0.087 0.913 46 H 0.001 0.999 47 H 0.000 1.000 48 H 0.068 0.932 49 H 0.081 0.919 50 H 0.040 0.960 51 H 0.100 0.900 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.039 8.115 -22.420 23.844 hybrid contribution 0.157 -1.072 1.266 1.666 sum 0.195 7.044 -21.154 22.297 Atomic orbital electron populations 1.21908 0.95325 1.01814 1.01556 1.21119 0.95601 0.96216 0.97689 1.21906 1.01356 0.95779 1.01485 1.20866 0.95187 0.94874 0.97872 0.91860 1.20686 0.95171 1.01981 0.96780 1.20437 1.00005 0.96456 0.97745 1.22174 0.89728 0.97333 0.98582 1.60641 1.04527 1.56120 1.04943 1.22010 0.99372 0.93339 0.89985 1.20412 0.95688 0.95810 0.92877 1.21942 0.94997 1.00092 1.01152 1.21436 0.97833 0.96208 1.00311 1.19007 0.93995 0.94047 0.92684 1.21645 1.37689 1.03687 0.91856 0.91687 1.25920 0.96030 0.96073 1.02125 1.70121 1.46749 1.19260 1.21904 0.85531 0.77939 0.79162 0.79256 1.18475 1.20823 1.20786 1.22431 0.94892 0.96897 0.92253 1.21486 1.02211 0.96418 0.94568 0.93437 0.92250 0.92279 0.91089 0.92000 0.92371 0.93430 0.90985 0.92473 0.92333 0.91843 0.94353 0.91027 0.92939 0.95985 0.90558 0.94139 0.94655 0.95476 0.94715 0.91337 0.99939 1.00023 0.93209 0.91919 0.95956 0.90021 0.92467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 8.95 71.98 0.64 -1.54 16 2 C -0.09 -1.32 2.47 -10.79 -0.03 -1.35 16 3 C -0.15 -2.13 8.85 71.98 0.64 -1.49 16 4 C -0.07 -1.27 1.47 -11.07 -0.02 -1.29 16 5 H 0.06 1.45 7.80 -2.39 -0.02 1.44 16 6 C -0.11 -1.96 4.66 28.93 0.13 -1.83 16 7 C -0.11 -2.35 4.51 28.74 0.13 -2.22 16 8 C 0.05 1.27 4.25 87.12 0.37 1.64 16 9 N -0.54 -15.19 2.90 -896.14 -2.60 -17.79 16 10 C 0.08 2.87 4.12 86.30 0.36 3.22 16 11 C -0.05 -1.93 0.61 -52.18 -0.03 -1.96 16 12 C -0.13 -4.71 6.76 71.98 0.49 -4.22 16 13 C -0.10 -3.94 8.00 71.98 0.58 -3.37 16 14 C 0.04 2.13 4.04 29.85 0.12 2.25 16 15 C -0.51 -28.78 7.56 25.60 0.19 -28.59 16 16 H 0.07 3.54 5.71 -2.91 -0.02 3.52 16 17 C -0.01 -0.29 5.46 84.66 0.46 0.17 16 18 N -0.94 -58.17 13.29 21.45 0.28 -57.88 16 19 Si 0.96 45.08 29.54 68.60 2.03 47.11 16 20 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 21 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 22 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 23 C 0.06 1.52 5.25 86.40 0.45 1.97 16 24 C -0.11 -2.06 4.71 30.10 0.14 -1.92 16 25 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.06 0.84 6.13 -2.39 -0.01 0.82 16 28 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.06 0.85 6.04 -2.39 -0.01 0.83 16 30 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 32 H 0.07 1.17 5.62 -2.39 -0.01 1.16 16 33 H 0.06 0.97 7.58 -2.38 -0.02 0.95 16 34 H 0.06 1.46 7.73 -2.39 -0.02 1.45 16 35 H 0.06 1.25 8.14 -2.39 -0.02 1.24 16 36 H 0.04 0.92 6.79 -2.39 -0.02 0.90 16 37 H 0.07 2.02 4.40 -2.38 -0.01 2.01 16 38 H 0.05 1.94 7.81 -2.39 -0.02 1.92 16 39 H 0.02 0.80 7.83 -2.39 -0.02 0.78 16 40 H 0.08 2.43 4.96 -2.39 -0.01 2.42 16 41 H 0.04 1.68 6.42 -2.39 -0.02 1.66 16 42 H 0.03 1.31 7.51 -2.38 -0.02 1.29 16 43 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.03 1.45 6.62 -2.39 -0.02 1.43 16 45 H 0.07 2.36 7.44 -2.39 -0.02 2.34 16 46 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 47 H -0.02 -1.08 8.14 -2.38 -0.02 -1.10 16 48 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 49 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 50 H 0.02 0.55 8.02 -2.39 -0.02 0.53 16 51 H 0.08 1.34 5.60 -2.38 -0.01 1.33 16 52 H 0.06 1.06 6.65 -2.39 -0.02 1.04 16 Total: -1.00 -62.16 365.08 5.20 -56.97 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: 0.85 Total: 12.12 kcal Atomic # 6 Polarization: -45.16 SS G_CDS: 4.63 Total: -40.52 kcal Atomic # 7 Polarization: -73.35 SS G_CDS: -2.31 Total: -75.67 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -62.16 5.20 -56.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093440708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.830 kcal (2) G-P(sol) polarization free energy of solvation -62.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds