Wall clock time and date at job start Tue Mar 31 2020 05:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.46769 * 2 1 4 4 C 1.52992 * 109.47352 * 119.99720 * 2 1 3 5 5 H 1.09003 * 108.74072 * 307.49851 * 4 2 1 6 6 C 1.50463 * 108.77166 * 65.80483 * 4 2 1 7 7 C 1.54511 * 108.85591 * 212.95382 * 6 4 2 8 8 C 1.45861 * 111.59116 * 282.80663 * 7 6 4 9 9 N 1.47802 * 112.91802 * 61.32305 * 8 7 6 10 10 C 1.46901 * 111.00047 * 153.86764 * 9 8 7 11 11 C 1.52995 * 109.46949 * 67.58192 * 10 9 8 12 12 C 1.53002 * 109.47201 * 67.71202 * 11 10 9 13 13 C 1.52994 * 109.47435 * 307.70781 * 11 10 9 14 14 C 1.53003 * 109.47000 * 187.70503 * 11 10 9 15 15 C 1.50703 * 109.47020 * 179.97438 * 14 11 10 16 16 H 1.07993 * 120.00143 * 0.02562 * 15 14 11 17 17 C 1.37881 * 119.99710 * 180.27386 * 15 14 11 18 18 N 1.31513 * 119.99563 * 179.72727 * 17 15 14 19 19 Si 1.86793 * 120.00096 * 359.73224 * 17 15 14 20 20 H 1.48499 * 109.47099 * 89.99886 * 19 17 15 21 21 H 1.48507 * 109.47064 * 209.99492 * 19 17 15 22 22 H 1.48502 * 109.47245 * 329.99594 * 19 17 15 23 23 C 1.44264 * 109.46654 * 276.74331 * 9 8 7 24 24 C 1.54064 * 111.98475 * 96.43577 * 23 9 8 25 25 H 1.09005 * 109.46860 * 184.64372 * 1 2 3 26 26 H 1.09000 * 109.47620 * 304.64023 * 1 2 3 27 27 H 1.09001 * 109.47661 * 64.64623 * 1 2 3 28 28 H 1.09004 * 109.47197 * 240.00228 * 2 1 3 29 29 H 1.09000 * 109.46835 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.46689 * 299.99856 * 3 2 1 31 31 H 1.08992 * 109.47055 * 59.99755 * 3 2 1 32 32 H 1.09002 * 109.57530 * 93.14268 * 6 4 2 33 33 H 1.09002 * 109.67689 * 332.82961 * 6 4 2 34 34 H 1.08995 * 109.05298 * 162.25972 * 7 6 4 35 35 H 1.09002 * 109.05321 * 43.35099 * 7 6 4 36 36 H 1.09001 * 108.79070 * 300.44147 * 8 7 6 37 37 H 1.08998 * 108.70426 * 182.15259 * 8 7 6 38 38 H 1.09004 * 109.46743 * 307.58692 * 10 9 8 39 39 H 1.08996 * 109.47486 * 187.58533 * 10 9 8 40 40 H 1.08995 * 109.47258 * 157.12811 * 12 11 10 41 41 H 1.09001 * 109.46523 * 277.12620 * 12 11 10 42 42 H 1.09004 * 109.47250 * 37.11970 * 12 11 10 43 43 H 1.09000 * 109.47097 * 326.82561 * 13 11 10 44 44 H 1.09000 * 109.47286 * 86.82992 * 13 11 10 45 45 H 1.09007 * 109.47608 * 206.82732 * 13 11 10 46 46 H 1.09000 * 109.47054 * 60.00656 * 14 11 10 47 47 H 1.08997 * 109.47452 * 300.00006 * 14 11 10 48 48 H 0.97008 * 120.00189 * 180.02562 * 18 17 15 49 49 H 1.09006 * 108.97877 * 217.08031 * 23 9 8 50 50 H 1.09003 * 108.97896 * 335.78884 * 23 9 8 51 51 H 1.09006 * 108.92208 * 198.18901 * 24 23 9 52 52 H 1.09003 * 108.84715 * 79.58826 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2492 5 1 1.5643 -0.2817 2.1260 6 6 1.6510 -2.1721 1.1634 7 6 1.3777 -2.7009 2.5893 8 6 2.6176 -2.9610 3.3121 9 7 3.4444 -1.7490 3.4914 10 6 4.3033 -1.8683 4.6771 11 6 5.3548 -2.9537 4.4379 12 6 6.3275 -2.4908 3.3514 13 6 4.6641 -4.2428 3.9887 14 6 6.1245 -3.2126 5.7347 15 6 7.1598 -4.2821 5.4993 16 1 7.2591 -4.7318 4.5225 17 6 7.9766 -4.6901 6.5324 18 7 8.8765 -5.6273 6.3283 19 14 7.8051 -3.9119 8.2218 20 1 6.8223 -4.6832 9.0246 21 1 9.1221 -3.9230 8.9080 22 1 7.3347 -2.5109 8.0761 23 6 4.2313 -1.5238 2.3034 24 6 3.5649 -0.5102 1.3537 25 1 -0.3633 -1.0244 0.0832 26 1 -0.3634 0.5841 0.8455 27 1 -0.3634 0.4400 -0.9287 28 1 1.8933 -0.5138 -0.8900 29 1 3.1299 1.4426 -0.0005 30 1 1.6765 1.9564 -0.8901 31 1 1.6765 1.9564 0.8899 32 1 2.4632 -2.7419 0.7121 33 1 0.7513 -2.2756 0.5568 34 1 0.8042 -3.6254 2.5220 35 1 0.7945 -1.9610 3.1375 36 1 3.1963 -3.7024 2.7612 37 1 2.3716 -3.3666 4.2934 38 1 3.6949 -2.1360 5.5410 39 1 4.7999 -0.9161 4.8634 40 1 7.2693 -3.0300 3.4533 41 1 5.8981 -2.6918 2.3699 42 1 6.5079 -1.4210 3.4569 43 1 3.6901 -4.3204 4.4717 44 1 4.5330 -4.2267 2.9067 45 1 5.2773 -5.0998 4.2676 46 1 5.4316 -3.5424 6.5088 47 1 6.6166 -2.2942 6.0547 48 1 9.4510 -5.9146 7.0552 49 1 5.2116 -1.1459 2.5939 50 1 4.3594 -2.4704 1.7784 51 1 4.0047 -0.6133 0.3616 52 1 3.7578 0.4973 1.7223 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093440709.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:39 Heat of formation + Delta-G solvation = 13.756831 kcal Electronic energy + Delta-G solvation = -24445.968202 eV Core-core repulsion = 21445.989633 eV Total energy + Delta-G solvation = -2999.978569 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.41117 -37.83180 -34.97580 -32.98480 -32.04693 -31.23465 -28.16209 -27.83393 -27.27706 -26.91342 -24.42169 -23.90287 -22.13321 -20.72465 -20.29453 -19.03731 -18.17591 -16.66922 -15.76153 -15.71188 -14.95566 -14.82012 -14.27283 -14.13382 -13.98791 -13.54752 -13.49016 -13.21714 -12.93097 -12.66496 -12.38852 -12.20532 -12.10643 -12.02889 -11.58959 -11.50121 -11.34464 -11.31485 -10.97599 -10.81063 -10.69994 -10.58443 -10.46672 -10.33686 -10.23862 -10.08082 -9.97288 -9.83403 -9.81126 -9.59632 -9.44838 -9.01819 -8.51994 -7.59372 -6.02779 -3.98948 3.30873 3.38851 3.42556 4.28620 4.46401 4.64203 4.79006 4.86091 5.03395 5.22078 5.23460 5.30590 5.40709 5.44044 5.48750 5.51701 5.53515 5.56989 5.67049 5.69649 5.77846 5.81505 5.86645 5.90564 5.95808 6.00190 6.09915 6.11427 6.16409 6.19490 6.25304 6.27944 6.30397 6.33526 6.38261 6.41960 6.49186 6.52148 6.62682 6.64325 6.66780 6.89258 7.13354 7.21043 7.29949 7.41556 7.52070 7.61795 7.81912 8.56315 9.02324 9.60433 11.10249 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.035438 B = 0.003802 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.916240 B = 7362.945078 C = 7520.576792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.097 4.097 3 C -0.148 4.148 4 C -0.069 4.069 5 H 0.072 0.928 6 C -0.113 4.113 7 C -0.115 4.115 8 C 0.031 3.969 9 N -0.521 5.521 10 C 0.061 3.939 11 C -0.081 4.081 12 C -0.148 4.148 13 C -0.150 4.150 14 C -0.001 4.001 15 C -0.509 4.509 16 H 0.077 0.923 17 C 0.065 3.935 18 N -0.905 5.905 19 Si 0.876 3.124 20 H -0.279 1.279 21 H -0.290 1.290 22 H -0.266 1.266 23 C 0.032 3.968 24 C -0.106 4.106 25 H 0.057 0.943 26 H 0.052 0.948 27 H 0.048 0.952 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.046 0.954 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.050 0.950 42 H 0.043 0.957 43 H 0.050 0.950 44 H 0.043 0.957 45 H 0.073 0.927 46 H 0.009 0.991 47 H 0.014 0.986 48 H 0.262 0.738 49 H 0.090 0.910 50 H 0.042 0.958 51 H 0.053 0.947 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.521 10.443 -11.375 21.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.115 4.115 3 C -0.205 4.205 4 C -0.088 4.088 5 H 0.091 0.909 6 C -0.151 4.151 7 C -0.153 4.153 8 C -0.096 4.096 9 N -0.243 5.243 10 C -0.067 4.067 11 C -0.083 4.083 12 C -0.205 4.205 13 C -0.206 4.206 14 C -0.039 4.039 15 C -0.547 4.547 16 H 0.094 0.906 17 C -0.136 4.136 18 N -0.545 5.545 19 Si 0.704 3.296 20 H -0.205 1.205 21 H -0.216 1.216 22 H -0.191 1.191 23 C -0.097 4.097 24 C -0.144 4.144 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.068 0.932 42 H 0.062 0.938 43 H 0.069 0.931 44 H 0.062 0.938 45 H 0.091 0.909 46 H 0.027 0.973 47 H 0.032 0.968 48 H 0.071 0.929 49 H 0.108 0.892 50 H 0.060 0.940 51 H 0.071 0.929 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.707 10.770 -11.210 22.099 hybrid contribution 0.578 -0.374 0.928 1.155 sum -15.130 10.397 -10.282 21.041 Atomic orbital electron populations 1.21918 0.95736 1.01742 1.01174 1.21291 0.95339 0.96179 0.98723 1.21892 1.01334 0.96135 1.01134 1.20857 0.95795 0.95045 0.97083 0.90932 1.21476 1.00737 0.96134 0.96723 1.20665 0.98065 1.00649 0.95885 1.21783 0.95033 0.92385 1.00362 1.61785 1.23207 1.36172 1.03162 1.22505 0.93756 0.98476 0.91959 1.21049 0.95042 0.94328 0.97876 1.22513 1.01266 0.99454 0.97256 1.22603 1.00172 0.99433 0.98397 1.19591 0.95206 0.96958 0.92169 1.21133 1.15898 1.19300 0.98374 0.90550 1.25026 0.95105 0.94756 0.98711 1.69914 1.21970 1.29976 1.32626 0.86834 0.77257 0.80579 0.84914 1.20474 1.21574 1.19064 1.22792 0.97591 0.98151 0.91124 1.22123 0.94687 0.99423 0.98146 0.92388 0.92863 0.93319 0.91797 0.92328 0.93468 0.92829 0.92464 0.92088 0.92451 0.92011 0.91956 0.91575 0.91496 0.91361 0.90894 0.93165 0.93810 0.93122 0.93834 0.90852 0.97251 0.96757 0.92869 0.89191 0.94001 0.92850 0.92397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.04 37.16 0.34 -0.91 16 2 C -0.10 -0.89 2.35 -90.62 -0.21 -1.10 16 3 C -0.15 -1.30 8.63 37.16 0.32 -0.98 16 4 C -0.07 -0.73 1.46 -91.21 -0.13 -0.86 16 5 H 0.07 0.87 7.36 -51.93 -0.38 0.49 16 6 C -0.11 -1.20 4.96 -27.21 -0.13 -1.33 16 7 C -0.11 -1.30 5.53 -29.32 -0.16 -1.47 16 8 C 0.03 0.42 3.14 -6.71 -0.02 0.39 16 9 N -0.52 -7.36 4.45 -239.56 -1.07 -8.42 16 10 C 0.06 0.99 4.63 -3.83 -0.02 0.97 16 11 C -0.08 -1.52 0.52 -154.51 -0.08 -1.60 16 12 C -0.15 -2.68 6.91 37.16 0.26 -2.42 16 13 C -0.15 -2.71 6.82 37.15 0.25 -2.45 16 14 C 0.00 -0.03 3.10 -27.88 -0.09 -0.12 16 15 C -0.51 -13.87 7.49 -34.44 -0.26 -14.13 16 16 H 0.08 2.23 6.46 -52.49 -0.34 1.89 16 17 C 0.06 1.85 5.47 -17.82 -0.10 1.75 16 18 N -0.91 -27.63 13.96 55.43 0.77 -26.85 16 19 Si 0.88 21.68 27.46 -169.99 -4.67 17.01 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 22 H -0.27 -6.35 6.55 56.52 0.37 -5.98 16 23 C 0.03 0.43 3.04 -4.68 -0.01 0.41 16 24 C -0.11 -1.21 4.27 -25.50 -0.11 -1.32 16 25 H 0.06 0.48 6.14 -51.93 -0.32 0.16 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.60 8.13 -51.93 -0.42 0.17 16 29 H 0.06 0.52 6.57 -51.93 -0.34 0.18 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.65 7.15 -51.93 -0.37 0.28 16 33 H 0.06 0.58 5.75 -51.93 -0.30 0.28 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.72 7.59 -51.93 -0.39 0.33 16 36 H 0.06 0.88 3.93 -51.93 -0.20 0.68 16 37 H 0.07 0.92 6.16 -51.93 -0.32 0.60 16 38 H 0.07 1.09 7.84 -51.93 -0.41 0.69 16 39 H 0.07 1.11 7.95 -51.93 -0.41 0.69 16 40 H 0.07 1.55 6.24 -51.93 -0.32 1.23 16 41 H 0.05 0.81 4.57 -51.93 -0.24 0.57 16 42 H 0.04 0.73 6.57 -51.93 -0.34 0.39 16 43 H 0.05 0.84 5.20 -51.93 -0.27 0.57 16 44 H 0.04 0.72 4.70 -51.93 -0.24 0.48 16 45 H 0.07 1.57 6.25 -51.93 -0.32 1.24 16 46 H 0.01 0.22 7.56 -51.93 -0.39 -0.18 16 47 H 0.01 0.34 7.21 -51.93 -0.37 -0.04 16 48 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 49 H 0.09 1.29 4.10 -51.93 -0.21 1.08 16 50 H 0.04 0.59 4.58 -51.93 -0.24 0.36 16 51 H 0.05 0.58 7.90 -51.93 -0.41 0.17 16 52 H 0.06 0.67 7.33 -51.93 -0.38 0.29 16 LS Contribution 346.26 15.07 5.22 5.22 Total: -1.00 -28.25 346.26 -9.15 -37.39 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -9.24 Total: 0.82 kcal Atomic # 6 Polarization: -25.00 SS G_CDS: -0.16 Total: -25.17 kcal Atomic # 7 Polarization: -34.98 SS G_CDS: -0.29 Total: -35.28 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.01 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -28.25 -9.15 -37.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093440709.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.151 kcal (2) G-P(sol) polarization free energy of solvation -28.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds