Wall clock time and date at job start Tue Mar 31 2020 05:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46903 * 110.99531 * 2 1 4 4 C 1.52999 * 109.47282 * 85.49202 * 3 2 1 5 5 C 1.52999 * 109.46988 * 300.48315 * 4 3 2 6 6 C 1.53000 * 109.47111 * 60.47793 * 4 3 2 7 7 C 1.52992 * 109.47638 * 180.48149 * 4 3 2 8 8 C 1.50701 * 109.47541 * 179.97438 * 7 4 3 9 9 H 1.08001 * 119.99771 * 0.02562 * 8 7 4 10 10 C 1.37873 * 120.00023 * 180.02562 * 8 7 4 11 11 N 1.31515 * 120.00346 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 120.00002 * 179.97438 * 10 8 7 13 13 H 1.48495 * 109.46889 * 359.97438 * 12 10 8 14 14 H 1.48496 * 109.47096 * 120.00202 * 12 10 8 15 15 H 1.48500 * 109.46979 * 240.00141 * 12 10 8 16 16 C 1.46897 * 111.00317 * 236.04812 * 2 1 3 17 17 C 1.53001 * 109.47258 * 298.95173 * 16 2 1 18 18 C 1.52996 * 109.47184 * 180.02562 * 17 16 2 19 19 C 1.53000 * 109.46972 * 299.99674 * 18 17 16 20 20 C 1.53001 * 109.47223 * 180.02562 * 19 18 17 21 21 C 1.53002 * 109.47103 * 300.00449 * 19 18 17 22 22 C 1.53001 * 109.46900 * 60.00152 * 19 18 17 23 23 C 1.52996 * 109.47184 * 299.99718 * 22 19 18 24 24 H 1.09007 * 109.46715 * 190.50263 * 1 2 3 25 25 H 1.08992 * 109.47204 * 310.50282 * 1 2 3 26 26 H 1.08997 * 109.47120 * 70.50815 * 1 2 3 27 27 H 1.09004 * 109.46980 * 205.48946 * 3 2 1 28 28 H 1.08996 * 109.47231 * 325.49245 * 3 2 1 29 29 H 1.09004 * 109.47203 * 68.60605 * 5 4 3 30 30 H 1.08997 * 109.47298 * 188.60374 * 5 4 3 31 31 H 1.08997 * 109.47239 * 308.60933 * 5 4 3 32 32 H 1.09004 * 109.46974 * 60.00872 * 6 4 3 33 33 H 1.09004 * 109.47492 * 179.97438 * 6 4 3 34 34 H 1.08999 * 109.47779 * 300.00500 * 6 4 3 35 35 H 1.09001 * 109.47466 * 300.00217 * 7 4 3 36 36 H 1.09003 * 109.47243 * 60.00064 * 7 4 3 37 37 H 0.97000 * 120.00013 * 179.97438 * 11 10 8 38 38 H 1.08998 * 109.47070 * 178.95118 * 16 2 1 39 39 H 1.09004 * 109.46954 * 59.99581 * 17 16 2 40 40 H 1.09000 * 109.46726 * 300.00013 * 17 16 2 41 41 H 1.08998 * 109.47072 * 180.02562 * 18 17 16 42 42 H 1.08998 * 109.47289 * 59.99855 * 18 17 16 43 43 H 1.09000 * 109.47184 * 59.99605 * 20 19 18 44 44 H 1.08992 * 109.47256 * 180.02562 * 20 19 18 45 45 H 1.09004 * 109.46579 * 300.00422 * 20 19 18 46 46 H 1.08999 * 109.47348 * 60.00256 * 21 19 18 47 47 H 1.09000 * 109.47132 * 180.02562 * 21 19 18 48 48 H 1.08998 * 109.47148 * 299.99688 * 21 19 18 49 49 H 1.09004 * 109.46954 * 60.00360 * 22 19 18 50 50 H 1.09000 * 109.46726 * 179.97438 * 22 19 18 51 51 H 1.08998 * 109.47289 * 300.00145 * 23 22 19 52 52 H 1.09008 * 109.47047 * 179.97438 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 2.0722 1.8883 1.4380 5 6 0.6758 1.8673 2.0628 6 6 3.0086 0.9932 2.2522 7 6 2.6091 3.3209 1.4372 8 6 2.6842 3.8302 2.8535 9 1 2.3799 3.1952 3.6725 10 6 3.1415 5.1066 3.1039 11 7 3.5125 5.8796 2.1067 12 14 3.2339 5.7380 4.8595 13 1 2.7617 4.6822 5.7908 14 1 4.6387 6.0933 5.1844 15 1 2.3742 6.9408 4.9988 16 6 1.9955 -0.7659 -1.1376 17 6 1.5264 -2.2186 -1.0352 18 6 2.0753 -3.0165 -2.2197 19 6 1.5640 -2.4064 -3.5263 20 6 2.1124 -3.2046 -4.7108 21 6 0.0348 -2.4511 -3.5459 22 6 2.0331 -0.9537 -3.6286 23 6 1.4842 -0.1558 -2.4442 24 1 -0.3633 -1.0105 0.1873 25 1 -0.3633 0.6674 0.7813 26 1 -0.3633 0.3429 -0.9687 27 1 2.9916 1.3783 -0.4423 28 1 1.3349 2.0141 -0.5822 29 1 0.3562 0.8348 2.2038 30 1 0.7016 2.3745 3.0272 31 1 -0.0254 2.3776 1.4025 32 1 4.0036 1.0082 1.8072 33 1 3.0638 1.3616 3.2766 34 1 2.6262 -0.0275 2.2529 35 1 3.6040 3.3359 0.9921 36 1 1.9419 3.9586 0.8572 37 1 3.8338 6.7777 2.2828 38 1 3.0849 -0.7341 -1.1239 39 1 0.4369 -2.2505 -1.0487 40 1 1.8911 -2.6534 -0.1045 41 1 1.7408 -4.0513 -2.1470 42 1 3.1648 -2.9846 -2.2056 43 1 1.7780 -4.2394 -4.6376 44 1 1.7485 -2.7697 -5.6416 45 1 3.2019 -3.1731 -4.6968 46 1 -0.3562 -1.8826 -2.7021 47 1 -0.3295 -2.0169 -4.4770 48 1 -0.2994 -3.4860 -3.4730 49 1 3.1226 -0.9218 -3.6147 50 1 1.6692 -0.5192 -4.5597 51 1 0.3948 -0.1877 -2.4582 52 1 1.8188 0.8791 -2.5169 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093508407.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:45 Heat of formation + Delta-G solvation = -28.094316 kcal Electronic energy + Delta-G solvation = -24071.631859 eV Core-core repulsion = 21069.838488 eV Total energy + Delta-G solvation = -3001.793371 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.15697 -37.77917 -35.14889 -32.38943 -31.13701 -30.84790 -27.78251 -27.40698 -27.00800 -26.12919 -25.62660 -23.67625 -22.89015 -22.10688 -19.91266 -18.39766 -17.75052 -16.14373 -15.86282 -15.34567 -15.01933 -14.63689 -14.38037 -14.11058 -14.03690 -13.36891 -13.24678 -12.99455 -12.73628 -12.49766 -12.43189 -12.13438 -12.03782 -11.94953 -11.90010 -11.75660 -11.38140 -11.21905 -11.07242 -10.87639 -10.79299 -10.71107 -10.57453 -10.39986 -10.29052 -10.26785 -10.11075 -10.03324 -9.87676 -9.53388 -8.88818 -8.77520 -8.28108 -7.77506 -5.92627 -3.92156 3.34687 3.42485 3.46308 4.23153 4.52233 4.53366 4.57804 4.74848 4.96085 5.13522 5.26896 5.31124 5.40654 5.41767 5.43457 5.50799 5.52360 5.54037 5.64744 5.69339 5.75689 5.77003 5.82142 5.86375 5.88805 5.95549 6.02924 6.04111 6.11611 6.13584 6.19319 6.22318 6.26914 6.33032 6.42018 6.45138 6.50551 6.64497 6.77908 6.88112 6.92652 7.30038 7.31493 7.35745 7.53038 7.59578 7.76511 7.91955 8.08577 8.53861 9.13697 9.70407 11.19129 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.037173 B = 0.003431 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.059121 B = 8159.866794 C = 8354.471450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.001 4.001 2 N -0.527 5.527 3 C 0.067 3.933 4 C -0.052 4.052 5 C -0.131 4.131 6 C -0.115 4.115 7 C 0.033 3.967 8 C -0.504 4.504 9 H 0.060 0.940 10 C 0.053 3.947 11 N -0.898 5.898 12 Si 0.886 3.114 13 H -0.273 1.273 14 H -0.286 1.286 15 H -0.286 1.286 16 C 0.087 3.913 17 C -0.111 4.111 18 C -0.106 4.106 19 C -0.066 4.066 20 C -0.141 4.141 21 C -0.144 4.144 22 C -0.103 4.103 23 C -0.156 4.156 24 H 0.058 0.942 25 H 0.090 0.910 26 H 0.022 0.978 27 H 0.061 0.939 28 H 0.031 0.969 29 H 0.045 0.955 30 H 0.061 0.939 31 H 0.036 0.964 32 H 0.035 0.965 33 H 0.052 0.948 34 H 0.044 0.956 35 H 0.013 0.987 36 H 0.011 0.989 37 H 0.257 0.743 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.052 0.948 44 H 0.052 0.948 45 H 0.053 0.947 46 H 0.062 0.938 47 H 0.050 0.950 48 H 0.051 0.949 49 H 0.061 0.939 50 H 0.057 0.943 51 H 0.068 0.932 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.400 -17.737 -11.469 21.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 N -0.249 5.249 3 C -0.060 4.060 4 C -0.052 4.052 5 C -0.188 4.188 6 C -0.172 4.172 7 C -0.005 4.005 8 C -0.542 4.542 9 H 0.078 0.922 10 C -0.147 4.147 11 N -0.539 5.539 12 Si 0.715 3.285 13 H -0.198 1.198 14 H -0.212 1.212 15 H -0.212 1.212 16 C -0.022 4.022 17 C -0.149 4.149 18 C -0.144 4.144 19 C -0.066 4.066 20 C -0.198 4.198 21 C -0.201 4.201 22 C -0.141 4.141 23 C -0.195 4.195 24 H 0.077 0.923 25 H 0.108 0.892 26 H 0.040 0.960 27 H 0.079 0.921 28 H 0.050 0.950 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.031 0.969 36 H 0.029 0.971 37 H 0.067 0.933 38 H 0.095 0.905 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.078 0.922 42 H 0.080 0.920 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.072 0.928 46 H 0.080 0.920 47 H 0.069 0.931 48 H 0.070 0.930 49 H 0.079 0.921 50 H 0.076 0.924 51 H 0.086 0.914 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.175 -17.792 -11.053 21.576 hybrid contribution -0.134 1.010 0.034 1.019 sum -5.309 -16.782 -11.018 20.766 Atomic orbital electron populations 1.22963 0.88669 1.02197 1.01083 1.62203 1.07237 1.14810 1.40639 1.22286 0.98523 0.86826 0.98384 1.20552 0.95289 0.97641 0.91739 1.21977 0.96242 0.99248 1.01309 1.21583 0.97764 0.97847 1.00004 1.19128 0.95658 0.88671 0.97009 1.21292 1.41827 0.98196 0.92875 0.92209 1.25018 0.95873 0.97178 0.96595 1.69980 1.44814 1.08562 1.30498 0.86623 0.77540 0.78828 0.85548 1.19759 1.21195 1.21236 1.21763 0.99408 0.93117 0.87915 1.21611 1.00898 0.94479 0.97929 1.21575 1.00482 0.98627 0.93719 1.20544 0.95586 0.95314 0.95123 1.21863 1.00808 0.99613 0.97531 1.21959 0.94922 1.01400 1.01780 1.21517 1.00499 0.94120 0.97942 1.22300 1.01498 0.99690 0.95983 0.92339 0.89206 0.96003 0.92080 0.95022 0.93573 0.91971 0.94507 0.94595 0.92857 0.93746 0.96878 0.97059 0.93288 0.90491 0.91735 0.91405 0.92174 0.92012 0.92869 0.92901 0.92751 0.91951 0.93105 0.93039 0.92058 0.92418 0.91374 0.91945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.02 8.06 60.06 0.48 0.47 16 2 N -0.53 -7.73 3.77 -234.89 -0.88 -8.62 16 3 C 0.07 1.18 3.14 -3.82 -0.01 1.16 16 4 C -0.05 -1.05 0.60 -154.51 -0.09 -1.14 16 5 C -0.13 -2.50 6.67 37.16 0.25 -2.25 16 6 C -0.11 -2.27 8.06 37.16 0.30 -1.97 16 7 C 0.03 0.84 4.04 -27.89 -0.11 0.72 16 8 C -0.50 -13.92 7.53 -34.44 -0.26 -14.18 16 9 H 0.06 1.62 5.72 -52.49 -0.30 1.32 16 10 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 11 N -0.90 -27.10 13.29 55.43 0.74 -26.37 16 12 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 13 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 14 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 15 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 16 C 0.09 1.09 2.13 -67.71 -0.14 0.94 16 17 C -0.11 -1.20 4.72 -26.73 -0.13 -1.32 16 18 C -0.11 -0.98 4.73 -26.73 -0.13 -1.11 16 19 C -0.07 -0.58 0.77 -154.51 -0.12 -0.70 16 20 C -0.14 -1.11 8.47 37.16 0.31 -0.79 16 21 C -0.14 -1.25 7.78 37.16 0.29 -0.96 16 22 C -0.10 -1.03 4.73 -26.73 -0.13 -1.16 16 23 C -0.16 -1.82 4.33 -26.73 -0.12 -1.94 16 24 H 0.06 0.70 6.69 -51.93 -0.35 0.36 16 25 H 0.09 1.29 3.89 -51.93 -0.20 1.09 16 26 H 0.02 0.28 5.95 -51.93 -0.31 -0.03 16 27 H 0.06 1.10 7.65 -51.93 -0.40 0.70 16 28 H 0.03 0.57 7.71 -51.93 -0.40 0.17 16 29 H 0.05 0.78 6.20 -51.93 -0.32 0.46 16 30 H 0.06 1.30 6.38 -51.93 -0.33 0.97 16 31 H 0.04 0.68 7.49 -51.93 -0.39 0.29 16 32 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.05 1.13 6.62 -51.93 -0.34 0.78 16 34 H 0.04 0.80 7.62 -51.93 -0.40 0.40 16 35 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 37 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.08 1.05 7.93 -51.93 -0.41 0.63 16 39 H 0.06 0.69 4.86 -51.93 -0.25 0.43 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.06 0.59 4.81 -51.93 -0.25 0.34 16 47 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 48 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 50 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 51 H 0.07 0.80 4.54 -51.93 -0.24 0.56 16 52 H 0.06 0.83 7.25 -51.92 -0.38 0.45 16 LS Contribution 364.60 15.07 5.49 5.49 Total: -1.00 -28.64 364.60 -9.27 -37.91 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -9.89 Total: -2.41 kcal Atomic # 6 Polarization: -23.08 SS G_CDS: 0.30 Total: -22.78 kcal Atomic # 7 Polarization: -34.84 SS G_CDS: -0.15 Total: -34.98 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -28.64 -9.27 -37.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093508407.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.812 kcal (2) G-P(sol) polarization free energy of solvation -28.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds