Wall clock time and date at job start Tue Mar 31 2020 05:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47357 * 2 1 4 4 C 1.52999 * 109.46890 * 120.00228 * 2 1 3 5 5 C 1.53006 * 109.47488 * 175.00006 * 4 2 1 6 6 H 1.09005 * 109.49672 * 55.07466 * 5 4 2 7 7 C 1.53117 * 109.50198 * 295.00187 * 5 4 2 8 8 C 1.53113 * 109.15970 * 182.36329 * 7 5 4 9 9 C 1.53037 * 109.27901 * 57.65021 * 8 7 5 10 10 N 1.46844 * 109.52598 * 300.82027 * 9 8 7 11 11 C 1.46897 * 111.00017 * 185.84164 * 10 9 8 12 12 C 1.52999 * 109.47319 * 87.06679 * 11 10 9 13 13 C 1.52998 * 109.47134 * 54.75917 * 12 11 10 14 14 C 1.52996 * 109.46930 * 294.75991 * 12 11 10 15 15 C 1.52993 * 109.47141 * 174.75881 * 12 11 10 16 16 C 1.50701 * 109.47414 * 179.97438 * 15 12 11 17 17 H 1.08003 * 119.99876 * 359.97438 * 16 15 12 18 18 C 1.37876 * 120.00337 * 180.27456 * 16 15 12 19 19 N 1.31512 * 119.99694 * 359.72968 * 18 16 15 20 20 Si 1.86805 * 120.00098 * 179.72462 * 18 16 15 21 21 H 1.48492 * 109.46972 * 60.00213 * 20 18 16 22 22 H 1.48503 * 109.46906 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.46862 * 300.00065 * 20 18 16 24 24 C 1.46845 * 111.19772 * 61.74050 * 10 9 8 25 25 H 1.08997 * 109.47502 * 299.99817 * 1 2 3 26 26 H 1.08996 * 109.46932 * 60.00304 * 1 2 3 27 27 H 1.08998 * 109.46966 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47410 * 239.99818 * 2 1 3 29 29 H 1.08999 * 109.47429 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47293 * 300.00025 * 3 2 1 31 31 H 1.09004 * 109.47009 * 59.99573 * 3 2 1 32 32 H 1.09003 * 109.47616 * 55.00143 * 4 2 1 33 33 H 1.08999 * 109.47297 * 294.99978 * 4 2 1 34 34 H 1.08996 * 109.52391 * 62.45541 * 7 5 4 35 35 H 1.09004 * 109.52130 * 302.26484 * 7 5 4 36 36 H 1.09000 * 109.50546 * 297.70725 * 8 7 5 37 37 H 1.09004 * 109.50571 * 177.59467 * 8 7 5 38 38 H 1.09007 * 109.45799 * 180.80284 * 9 8 7 39 39 H 1.09000 * 109.45589 * 60.83438 * 9 8 7 40 40 H 1.08999 * 109.47061 * 327.06387 * 11 10 9 41 41 H 1.09003 * 109.46933 * 207.06989 * 11 10 9 42 42 H 1.09001 * 109.47486 * 179.97438 * 13 12 11 43 43 H 1.08997 * 109.46992 * 300.00227 * 13 12 11 44 44 H 1.09001 * 109.47007 * 60.00097 * 13 12 11 45 45 H 1.08995 * 109.47162 * 310.92019 * 14 12 11 46 46 H 1.08999 * 109.47593 * 70.92323 * 14 12 11 47 47 H 1.09005 * 109.47194 * 190.92042 * 14 12 11 48 48 H 1.09005 * 109.47026 * 59.99922 * 15 12 11 49 49 H 1.09001 * 109.47280 * 300.00074 * 15 12 11 50 50 H 0.97009 * 119.99500 * 180.02562 * 19 18 16 51 51 H 1.09001 * 109.45966 * 58.27398 * 24 10 9 52 52 H 1.08998 * 109.46478 * 178.24402 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5648 -0.8312 1.1881 6 1 3.9960 0.1610 1.0542 7 6 3.9661 -1.7258 0.0120 8 6 5.4895 -1.8783 -0.0065 9 6 5.9553 -2.4604 1.3300 10 7 5.5481 -1.5679 2.4227 11 6 6.0974 -2.0232 3.7068 12 6 7.4963 -1.4346 3.9005 13 6 7.4323 0.0880 3.7645 14 6 8.4399 -2.0023 2.8385 15 6 8.0154 -1.8009 5.2923 16 6 9.3936 -1.2218 5.4830 17 1 9.8534 -0.6500 4.6905 18 6 10.0700 -1.4271 6.6667 19 7 9.5103 -2.1239 7.6315 20 14 11.7814 -0.7157 6.9001 21 1 11.7248 0.7626 6.7710 22 1 12.2877 -1.0763 8.2487 23 1 12.6924 -1.2683 5.8658 24 6 4.0864 -1.4436 2.4899 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6053 -1.7199 1.2951 33 1 1.7516 -0.1584 2.1370 34 1 3.6341 -1.2712 -0.9213 35 1 3.5033 -2.7062 0.1257 36 1 5.9511 -0.9027 -0.1591 37 1 5.7784 -2.5487 -0.8159 38 1 7.0411 -2.5568 1.3254 39 1 5.5042 -3.4419 1.4755 40 1 6.1573 -3.1115 3.7109 41 1 5.4483 -1.6920 4.5175 42 1 8.4288 0.5074 3.9030 43 1 7.0624 0.3489 2.7730 44 1 6.7600 0.4924 4.5212 45 1 8.3393 -3.0871 2.8055 46 1 8.1849 -1.5840 1.8648 47 1 9.4680 -1.7403 3.0884 48 1 8.0610 -2.8857 5.3892 49 1 7.3431 -1.3965 6.0490 50 1 9.9861 -2.2680 8.4645 51 1 3.6441 -2.4299 2.6300 52 1 3.8147 -0.8015 3.3278 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093716581.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:41 Heat of formation + Delta-G solvation = -40.637148 kcal Electronic energy + Delta-G solvation = -23637.093378 eV Core-core repulsion = 20634.756109 eV Total energy + Delta-G solvation = -3002.337269 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.51976 -37.34335 -35.58408 -32.86039 -31.74358 -31.31817 -27.36837 -27.09022 -26.69558 -26.08264 -25.72659 -23.49873 -22.21540 -21.71560 -19.95470 -19.40632 -17.78874 -16.15351 -15.70974 -15.40989 -15.00205 -14.55375 -14.40553 -14.34714 -13.83136 -13.58719 -13.40605 -13.03346 -12.78832 -12.71729 -12.42261 -12.35628 -11.98866 -11.95518 -11.82482 -11.56179 -11.38017 -11.02899 -10.95341 -10.83453 -10.78694 -10.72312 -10.68489 -10.45999 -10.40066 -10.20671 -10.18701 -10.05980 -9.78364 -9.54709 -8.88307 -8.78649 -8.27254 -7.83413 -5.92159 -3.91819 3.37355 3.41727 3.44181 4.17376 4.52560 4.59865 4.72080 4.75153 4.92945 5.00093 5.08231 5.30724 5.42023 5.43480 5.46000 5.49288 5.57347 5.57731 5.66001 5.67364 5.70523 5.75086 5.80948 5.82853 5.89358 5.96180 6.00185 6.06195 6.06944 6.08597 6.16283 6.20185 6.27842 6.33549 6.37963 6.42776 6.52567 6.64256 6.79794 6.88970 6.93701 7.30869 7.33246 7.36122 7.52858 7.58956 7.76355 7.92458 8.08787 8.53916 9.13473 9.70513 11.19553 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.031894 B = 0.003267 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.700469 B = 8569.049326 C = 8760.374358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 C -0.149 4.149 4 C -0.109 4.109 5 C -0.085 4.085 6 H 0.081 0.919 7 C -0.114 4.114 8 C -0.116 4.116 9 C 0.040 3.960 10 N -0.529 5.529 11 C 0.066 3.934 12 C -0.051 4.051 13 C -0.113 4.113 14 C -0.132 4.132 15 C 0.033 3.967 16 C -0.505 4.505 17 H 0.059 0.941 18 C 0.054 3.946 19 N -0.899 5.899 20 Si 0.887 3.113 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.278 1.278 24 C 0.061 3.939 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.054 0.946 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.094 0.906 39 H 0.022 0.978 40 H 0.031 0.969 41 H 0.062 0.938 42 H 0.051 0.949 43 H 0.045 0.955 44 H 0.035 0.965 45 H 0.035 0.965 46 H 0.043 0.957 47 H 0.064 0.936 48 H 0.011 0.989 49 H 0.013 0.987 50 H 0.259 0.741 51 H 0.024 0.976 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.378 2.204 -16.282 22.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.116 4.116 3 C -0.206 4.206 4 C -0.147 4.147 5 C -0.103 4.103 6 H 0.100 0.900 7 C -0.151 4.151 8 C -0.154 4.154 9 C -0.088 4.088 10 N -0.253 5.253 11 C -0.061 4.061 12 C -0.051 4.051 13 C -0.170 4.170 14 C -0.188 4.188 15 C -0.004 4.004 16 C -0.543 4.543 17 H 0.077 0.923 18 C -0.146 4.146 19 N -0.539 5.539 20 Si 0.715 3.285 21 H -0.203 1.203 22 H -0.215 1.215 23 H -0.204 1.204 24 C -0.067 4.067 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.112 0.888 39 H 0.041 0.959 40 H 0.050 0.950 41 H 0.080 0.920 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.054 0.946 45 H 0.054 0.946 46 H 0.062 0.938 47 H 0.082 0.918 48 H 0.029 0.971 49 H 0.032 0.968 50 H 0.068 0.932 51 H 0.042 0.958 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -15.157 2.594 -16.189 22.328 hybrid contribution 0.562 -0.578 0.547 0.974 sum -14.595 2.016 -15.642 21.488 Atomic orbital electron populations 1.21847 0.95646 1.01451 1.01533 1.21137 0.95211 0.96502 0.98704 1.21893 1.01579 0.95818 1.01356 1.21659 0.95205 1.00182 0.97674 1.21238 0.94338 1.00170 0.94591 0.90037 1.21654 0.96087 0.99298 0.98083 1.21579 0.95573 1.01595 0.96653 1.22517 1.02335 0.93072 0.90892 1.61886 1.08700 1.49991 1.04691 1.22317 0.97539 0.97070 0.89189 1.20546 0.91314 0.95368 0.97914 1.21557 1.00721 0.95219 0.99507 1.21968 1.00982 0.98656 0.97240 1.19124 0.95684 0.96304 0.89324 1.21212 1.00892 1.32516 0.99708 0.92320 1.25015 0.97778 0.95545 0.96282 1.69963 1.37841 1.40556 1.05515 0.86735 0.85070 0.79579 0.77073 1.20320 1.21484 1.20378 1.22132 0.88385 0.98718 0.97464 0.92790 0.92985 0.92931 0.91129 0.92093 0.93185 0.92789 0.92314 0.91928 0.92128 0.92745 0.91263 0.92201 0.88793 0.95931 0.95050 0.91952 0.92981 0.93616 0.94618 0.94628 0.93808 0.91756 0.97053 0.96849 0.93168 0.95784 0.91136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.19 37.16 0.34 -0.74 16 2 C -0.10 -0.79 2.78 -90.62 -0.25 -1.04 16 3 C -0.15 -1.23 8.95 37.15 0.33 -0.90 16 4 C -0.11 -1.00 4.16 -26.73 -0.11 -1.11 16 5 C -0.08 -0.91 2.21 -90.54 -0.20 -1.11 16 6 H 0.08 0.95 6.35 -51.93 -0.33 0.62 16 7 C -0.11 -1.16 4.98 -26.61 -0.13 -1.30 16 8 C -0.12 -1.32 6.09 -26.65 -0.16 -1.48 16 9 C 0.04 0.54 4.90 -3.84 -0.02 0.52 16 10 N -0.53 -7.94 3.49 -234.68 -0.82 -8.76 16 11 C 0.07 1.18 4.25 -3.83 -0.02 1.16 16 12 C -0.05 -1.03 0.61 -154.52 -0.09 -1.13 16 13 C -0.11 -2.23 7.98 37.16 0.30 -1.94 16 14 C -0.13 -2.52 6.85 37.16 0.25 -2.27 16 15 C 0.03 0.85 4.04 -27.89 -0.11 0.73 16 16 C -0.50 -13.97 7.50 -34.44 -0.26 -14.23 16 17 H 0.06 1.58 5.74 -52.48 -0.30 1.28 16 18 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 19 N -0.90 -27.15 13.29 55.43 0.74 -26.41 16 20 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 C 0.06 0.80 4.64 -3.84 -0.02 0.78 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.58 6.40 -51.93 -0.33 0.25 16 29 H 0.06 0.54 6.46 -51.93 -0.34 0.21 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.56 6.59 -51.93 -0.34 0.21 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.09 1.37 4.21 -51.93 -0.22 1.16 16 39 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.03 0.57 7.79 -51.93 -0.40 0.17 16 41 H 0.06 1.13 7.61 -51.93 -0.40 0.74 16 42 H 0.05 1.10 6.62 -51.93 -0.34 0.76 16 43 H 0.04 0.82 7.47 -51.93 -0.39 0.44 16 44 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.03 0.66 7.81 -51.93 -0.41 0.25 16 46 H 0.04 0.74 6.15 -51.93 -0.32 0.43 16 47 H 0.06 1.35 6.33 -51.93 -0.33 1.03 16 48 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 49 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 50 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 51 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 52 H 0.07 0.94 7.90 -51.93 -0.41 0.53 16 LS Contribution 376.10 15.07 5.67 5.67 Total: -1.00 -28.70 376.10 -10.02 -38.72 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -10.33 Total: -3.41 kcal Atomic # 6 Polarization: -22.34 SS G_CDS: -0.25 Total: -22.59 kcal Atomic # 7 Polarization: -35.08 SS G_CDS: -0.08 Total: -35.17 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -28.70 -10.02 -38.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093716581.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.922 kcal (2) G-P(sol) polarization free energy of solvation -28.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds