Wall clock time and date at job start Tue Mar 31 2020 05:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46845 * 2 1 4 4 C 1.53001 * 109.47008 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.46931 * 59.05654 * 4 3 2 6 6 C 1.52998 * 109.47263 * 299.05947 * 4 3 2 7 7 C 1.52997 * 109.47134 * 179.05489 * 4 3 2 8 8 H 1.09001 * 110.33447 * 56.23917 * 7 4 3 9 9 C 1.54907 * 110.37616 * 178.61216 * 7 4 3 10 10 C 1.55129 * 101.65860 * 155.89971 * 9 7 4 11 11 C 1.54318 * 103.01887 * 324.34875 * 10 9 7 12 12 N 1.47443 * 107.23537 * 22.27927 * 11 10 9 13 13 C 1.46903 * 111.00169 * 123.25598 * 12 11 10 14 14 C 1.53000 * 109.46765 * 85.31948 * 13 12 11 15 15 C 1.53008 * 109.47181 * 305.99030 * 14 13 12 16 16 C 1.53001 * 109.47186 * 65.98888 * 14 13 12 17 17 C 1.52999 * 109.47122 * 185.99119 * 14 13 12 18 18 C 1.50697 * 109.47091 * 180.02562 * 17 14 13 19 19 H 1.07994 * 120.00500 * 359.97438 * 18 17 14 20 20 C 1.37885 * 120.00057 * 180.02562 * 18 17 14 21 21 N 1.31513 * 119.99649 * 359.97438 * 20 18 17 22 22 Si 1.86791 * 120.00306 * 179.97438 * 20 18 17 23 23 H 1.48509 * 109.47134 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47189 * 119.99464 * 22 20 18 25 25 H 1.48499 * 109.47523 * 240.00077 * 22 20 18 26 26 H 1.08990 * 109.47626 * 300.00276 * 1 2 3 27 27 H 1.09003 * 109.46929 * 60.00589 * 1 2 3 28 28 H 1.09007 * 109.47139 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47414 * 239.99416 * 2 1 3 30 30 H 1.09003 * 109.46929 * 119.99410 * 2 1 3 31 31 H 1.09002 * 109.47295 * 59.99909 * 3 2 1 32 32 H 1.09003 * 109.46875 * 299.99444 * 3 2 1 33 33 H 1.08999 * 109.47019 * 65.43323 * 6 4 3 34 34 H 1.09005 * 109.46759 * 185.43190 * 6 4 3 35 35 H 1.08993 * 109.47182 * 305.43199 * 6 4 3 36 36 H 1.09000 * 110.99273 * 273.99476 * 9 7 4 37 37 H 1.09003 * 110.98838 * 37.80531 * 9 7 4 38 38 H 1.08996 * 110.71376 * 205.96449 * 10 9 7 39 39 H 1.09005 * 110.70946 * 82.72744 * 10 9 7 40 40 H 1.09006 * 109.88907 * 262.87561 * 11 10 9 41 41 H 1.08997 * 110.02791 * 141.76395 * 11 10 9 42 42 H 1.08998 * 109.47176 * 205.31887 * 13 12 11 43 43 H 1.09002 * 109.46979 * 325.31965 * 13 12 11 44 44 H 1.08995 * 109.47254 * 71.59449 * 15 14 13 45 45 H 1.08995 * 109.46830 * 191.60347 * 15 14 13 46 46 H 1.09000 * 109.46857 * 311.60020 * 15 14 13 47 47 H 1.08993 * 109.46861 * 59.99856 * 16 14 13 48 48 H 1.08998 * 109.47233 * 180.02562 * 16 14 13 49 49 H 1.08997 * 109.46947 * 300.00044 * 16 14 13 50 50 H 1.09000 * 109.47274 * 300.00008 * 17 14 13 51 51 H 1.09002 * 109.47208 * 59.99825 * 17 14 13 52 52 H 0.97006 * 120.00049 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9336 0.9140 -0.8805 6 6 4.0794 0.7421 1.2619 7 6 4.0799 2.8849 -0.0231 8 1 3.6703 3.4454 0.8172 9 6 5.6283 2.9101 0.0123 10 6 5.9343 4.2861 -0.6354 11 6 4.8299 4.4203 -1.7048 12 7 3.7208 3.5368 -1.3007 13 6 2.4667 4.2910 -1.1725 14 6 1.7905 4.3923 -2.5411 15 6 2.7759 4.9775 -3.5549 16 6 1.3548 2.9990 -2.9991 17 6 0.5645 5.3018 -2.4381 18 6 -0.1020 5.4011 -3.7861 19 1 0.3080 4.8691 -4.6317 20 6 -1.2348 6.1721 -3.9400 21 7 -1.7338 6.8203 -2.9103 22 14 -2.0605 6.2958 -5.6109 23 1 -1.3081 5.4786 -6.5966 24 1 -3.4546 5.7938 -5.5125 25 1 -2.0748 7.7135 -6.0523 26 1 -0.3634 0.5138 0.8898 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6765 1.9564 0.8900 32 1 1.6766 1.9563 -0.8901 33 1 3.7978 -0.3104 1.2318 34 1 5.1651 0.8265 1.3108 35 1 3.6385 1.2113 2.1413 36 1 5.9962 2.8707 1.0376 37 1 6.0458 2.0973 -0.5821 38 1 6.9210 4.2833 -1.0986 39 1 5.8559 5.0851 0.1019 40 1 5.2151 4.1111 -2.6765 41 1 4.4824 5.4522 -1.7551 42 1 1.8034 3.7774 -0.4765 43 1 2.6814 5.2920 -0.7982 44 1 3.5443 4.2388 -3.7827 45 1 2.2433 5.2415 -4.4685 46 1 3.2420 5.8691 -3.1355 47 1 0.6529 2.5822 -2.2770 48 1 0.8734 3.0711 -3.9744 49 1 2.2283 2.3511 -3.0725 50 1 -0.1376 4.8850 -1.7160 51 1 0.8748 6.2945 -2.1118 52 1 -2.5310 7.3624 -3.0184 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093845281.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:09 Heat of formation + Delta-G solvation = -36.687613 kcal Electronic energy + Delta-G solvation = -24453.344781 eV Core-core repulsion = 21451.178777 eV Total energy + Delta-G solvation = -3002.166004 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.71665 -36.54011 -35.72077 -32.59533 -32.02612 -30.78512 -27.97632 -26.84675 -26.61955 -25.97775 -25.37259 -22.95189 -22.42082 -20.66831 -20.33009 -19.50937 -17.76111 -16.25776 -15.91271 -15.48869 -15.08706 -14.47232 -14.20109 -13.86993 -13.66571 -13.38311 -13.23970 -12.87347 -12.77018 -12.38510 -12.12410 -12.08566 -12.00600 -11.86076 -11.67430 -11.48310 -11.31728 -11.01271 -10.95409 -10.79563 -10.71273 -10.65674 -10.59804 -10.52708 -10.26844 -10.17628 -10.14353 -9.99225 -9.82448 -9.39829 -8.92749 -8.75264 -8.28147 -7.87431 -5.92738 -3.92121 3.34530 3.42431 3.46181 4.22204 4.52420 4.67199 4.75895 5.06850 5.08381 5.12702 5.23027 5.33499 5.43280 5.47959 5.50813 5.55968 5.60226 5.71634 5.77948 5.83796 5.85184 5.87055 5.94274 5.97294 6.04093 6.04761 6.10687 6.13928 6.21495 6.25543 6.31153 6.31546 6.39943 6.42139 6.46904 6.61079 6.65641 6.70899 6.76885 6.90335 6.93449 7.27832 7.31846 7.37619 7.46361 7.61508 7.76691 7.91550 8.08390 8.53741 9.13674 9.70395 11.19013 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.016704 B = 0.005106 C = 0.004204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.796565 B = 5481.924020 C = 6659.124641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.131 4.131 4 C -0.071 4.071 5 H 0.074 0.926 6 C -0.148 4.148 7 C 0.076 3.924 8 H 0.049 0.951 9 C -0.121 4.121 10 C -0.146 4.146 11 C 0.044 3.956 12 N -0.516 5.516 13 C 0.056 3.944 14 C -0.049 4.049 15 C -0.128 4.128 16 C -0.117 4.117 17 C 0.032 3.968 18 C -0.503 4.503 19 H 0.060 0.940 20 C 0.054 3.946 21 N -0.898 5.898 22 Si 0.886 3.114 23 H -0.273 1.273 24 H -0.286 1.286 25 H -0.286 1.286 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.047 0.953 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.093 0.907 33 H 0.055 0.945 34 H 0.051 0.949 35 H 0.050 0.950 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.061 0.939 40 H 0.073 0.927 41 H 0.059 0.941 42 H 0.068 0.932 43 H 0.030 0.970 44 H 0.041 0.959 45 H 0.060 0.940 46 H 0.034 0.966 47 H 0.039 0.961 48 H 0.053 0.947 49 H 0.043 0.957 50 H 0.013 0.987 51 H 0.011 0.989 52 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.170 -10.753 7.520 18.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.168 4.168 4 C -0.090 4.090 5 H 0.093 0.907 6 C -0.206 4.206 7 C -0.033 4.033 8 H 0.067 0.933 9 C -0.159 4.159 10 C -0.184 4.184 11 C -0.084 4.084 12 N -0.239 5.239 13 C -0.071 4.071 14 C -0.050 4.050 15 C -0.185 4.185 16 C -0.174 4.174 17 C -0.005 4.005 18 C -0.541 4.541 19 H 0.078 0.922 20 C -0.146 4.146 21 N -0.538 5.538 22 Si 0.714 3.286 23 H -0.198 1.198 24 H -0.212 1.212 25 H -0.212 1.212 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.111 0.889 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.091 0.909 41 H 0.077 0.923 42 H 0.087 0.913 43 H 0.048 0.952 44 H 0.060 0.940 45 H 0.079 0.921 46 H 0.053 0.947 47 H 0.058 0.942 48 H 0.072 0.928 49 H 0.062 0.938 50 H 0.031 0.969 51 H 0.029 0.971 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 12.938 -11.005 7.179 18.440 hybrid contribution -0.537 0.937 -0.171 1.094 sum 12.401 -10.067 7.008 17.443 Atomic orbital electron populations 1.21785 0.96136 1.00990 1.02232 1.21533 0.95640 0.97388 1.01233 1.21992 0.94759 0.96629 1.03446 1.21020 0.95596 0.94455 0.97916 0.90740 1.21913 1.00567 1.00295 0.97821 1.22598 0.93986 0.95211 0.91467 0.93344 1.22712 0.95593 0.97356 1.00288 1.22836 0.99508 0.97354 0.98725 1.23016 0.90837 0.96416 0.98133 1.63425 1.02658 1.29883 1.27940 1.22640 0.90288 0.95090 0.99127 1.20525 0.96097 0.96469 0.91912 1.21894 0.98093 0.98480 1.00036 1.21678 0.99126 0.95741 1.00876 1.19135 0.90822 0.93513 0.97037 1.21281 1.09650 1.27708 0.95464 0.92229 1.25012 0.97385 0.95971 0.96249 1.69982 1.22629 1.31560 1.29670 0.86634 0.79449 0.77655 0.84862 1.19764 1.21201 1.21246 0.93024 0.92236 0.93365 0.92367 0.92653 0.92963 0.88898 0.92633 0.92953 0.93128 0.91554 0.90876 0.91325 0.91987 0.90869 0.92258 0.91341 0.95180 0.93974 0.92071 0.94709 0.94236 0.92759 0.93774 0.96902 0.97105 0.93304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.91 37.16 0.37 -1.48 16 2 C -0.12 -1.40 5.61 -26.73 -0.15 -1.55 16 3 C -0.13 -1.70 3.52 -26.73 -0.09 -1.79 16 4 C -0.07 -0.83 2.20 -90.62 -0.20 -1.03 16 5 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 6 C -0.15 -1.45 8.56 37.16 0.32 -1.13 16 7 C 0.08 0.95 2.03 -66.19 -0.13 0.82 16 8 H 0.05 0.66 7.79 -51.93 -0.40 0.25 16 9 C -0.12 -1.30 5.27 -24.60 -0.13 -1.42 16 10 C -0.15 -1.62 6.94 -24.91 -0.17 -1.79 16 11 C 0.04 0.59 4.95 -2.84 -0.01 0.58 16 12 N -0.52 -7.54 3.84 -223.38 -0.86 -8.40 16 13 C 0.06 0.98 3.29 -3.82 -0.01 0.96 16 14 C -0.05 -0.99 0.61 -154.50 -0.09 -1.09 16 15 C -0.13 -2.46 7.00 37.16 0.26 -2.20 16 16 C -0.12 -2.26 6.94 37.16 0.26 -2.00 16 17 C 0.03 0.82 4.04 -27.88 -0.11 0.71 16 18 C -0.50 -13.81 7.49 -34.44 -0.26 -14.07 16 19 H 0.06 1.61 5.75 -52.49 -0.30 1.31 16 20 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 21 N -0.90 -27.01 13.29 55.43 0.74 -26.28 16 22 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 23 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.05 0.51 8.14 -51.92 -0.42 0.09 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.58 6.58 -51.93 -0.34 0.24 16 31 H 0.05 0.70 8.11 -51.93 -0.42 0.28 16 32 H 0.09 1.41 3.35 -51.93 -0.17 1.24 16 33 H 0.05 0.51 6.75 -51.93 -0.35 0.16 16 34 H 0.05 0.47 6.86 -51.93 -0.36 0.11 16 35 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.63 7.90 -51.93 -0.41 0.22 16 37 H 0.07 0.77 8.06 -51.93 -0.42 0.35 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.99 7.29 -51.93 -0.38 0.61 16 41 H 0.06 0.88 5.71 -51.93 -0.30 0.58 16 42 H 0.07 1.21 5.63 -51.93 -0.29 0.91 16 43 H 0.03 0.55 7.46 -51.93 -0.39 0.16 16 44 H 0.04 0.73 6.42 -51.93 -0.33 0.40 16 45 H 0.06 1.30 6.32 -51.93 -0.33 0.97 16 46 H 0.03 0.64 6.67 -51.93 -0.35 0.30 16 47 H 0.04 0.75 6.77 -51.93 -0.35 0.40 16 48 H 0.05 1.13 6.62 -51.93 -0.34 0.79 16 49 H 0.04 0.78 7.76 -51.93 -0.40 0.38 16 50 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 51 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 52 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 369.33 15.07 5.57 5.57 Total: -1.00 -28.48 369.33 -9.84 -38.32 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -10.00 Total: -0.91 kcal Atomic # 6 Polarization: -24.77 SS G_CDS: -0.26 Total: -25.03 kcal Atomic # 7 Polarization: -34.55 SS G_CDS: -0.12 Total: -34.68 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -28.48 -9.84 -38.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093845281.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.633 kcal (2) G-P(sol) polarization free energy of solvation -28.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds