Wall clock time and date at job start Tue Mar 31 2020 05:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46960 * 2 1 4 4 C 1.53000 * 109.47683 * 240.00033 * 2 1 3 5 5 C 1.50695 * 109.46852 * 59.99862 * 4 2 1 6 6 H 1.07997 * 120.00644 * 0.02562 * 5 4 2 7 7 C 1.37883 * 120.00140 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99544 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00325 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.46882 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47298 * 119.99648 * 9 7 5 12 12 H 1.48505 * 109.46939 * 239.99916 * 9 7 5 13 13 C 1.52997 * 109.47050 * 119.99894 * 2 1 3 14 14 N 1.46901 * 109.47372 * 300.00419 * 13 2 1 15 15 C 1.46900 * 111.00638 * 180.02562 * 14 13 2 16 16 C 1.52991 * 109.47497 * 180.02562 * 15 14 13 17 17 C 1.52999 * 109.47258 * 179.97438 * 16 15 14 18 18 C 1.53003 * 109.47400 * 179.97438 * 17 16 15 19 19 C 1.52994 * 109.47126 * 180.02562 * 18 17 16 20 20 C 1.54961 * 110.92578 * 71.54077 * 19 18 17 21 21 C 1.54270 * 104.16191 * 156.29427 * 20 19 18 22 22 C 1.53869 * 106.63967 * 336.44607 * 21 20 19 23 23 C 1.54268 * 106.60115 * 359.97438 * 22 21 20 24 24 H 1.08992 * 109.47645 * 299.99723 * 1 2 3 25 25 H 1.09001 * 109.46686 * 60.00333 * 1 2 3 26 26 H 1.09003 * 109.46649 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47546 * 179.97438 * 3 2 1 28 28 H 1.08995 * 109.47184 * 299.99843 * 3 2 1 29 29 H 1.09005 * 109.46888 * 60.00036 * 3 2 1 30 30 H 1.08995 * 109.47270 * 179.97438 * 4 2 1 31 31 H 1.08999 * 109.46590 * 300.00233 * 4 2 1 32 32 H 0.97003 * 120.00276 * 180.02562 * 8 7 5 33 33 H 1.09001 * 109.47568 * 180.02562 * 13 2 1 34 34 H 1.09004 * 109.47475 * 60.00124 * 13 2 1 35 35 H 1.00911 * 110.99861 * 303.95527 * 14 13 2 36 36 H 1.08999 * 109.46865 * 59.99454 * 15 14 13 37 37 H 1.09005 * 109.46890 * 300.00161 * 15 14 13 38 38 H 1.08999 * 109.47591 * 59.99798 * 16 15 14 39 39 H 1.09000 * 109.47025 * 299.99463 * 16 15 14 40 40 H 1.09001 * 109.47169 * 60.00211 * 17 16 15 41 41 H 1.09000 * 109.46864 * 299.99807 * 17 16 15 42 42 H 1.08995 * 109.46922 * 59.99869 * 18 17 16 43 43 H 1.09000 * 109.47141 * 299.99866 * 18 17 16 44 44 H 1.09001 * 110.67554 * 308.23161 * 19 18 17 45 45 H 1.08997 * 110.47708 * 37.64024 * 20 19 18 46 46 H 1.09002 * 110.53308 * 274.97416 * 20 19 18 47 47 H 1.09002 * 110.03399 * 217.13605 * 21 20 19 48 48 H 1.08995 * 110.02943 * 95.75505 * 21 20 19 49 49 H 1.08999 * 110.03405 * 119.26051 * 22 21 20 50 50 H 1.09001 * 110.03705 * 240.64196 * 22 21 20 51 51 H 1.08997 * 110.48788 * 142.28685 * 23 22 21 52 52 H 1.09000 * 110.48806 * 264.79985 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.5378 -0.0108 -2.4796 6 1 0.9172 0.8675 -2.3806 7 6 1.8706 -0.4821 -3.7320 8 7 2.6259 -1.5519 -3.8525 9 14 1.2485 0.3989 -5.2572 10 1 0.4239 1.5658 -4.8530 11 1 2.4038 0.8648 -6.0655 12 1 0.4229 -0.5340 -6.0655 13 6 2.0400 -0.7212 1.2492 14 7 1.5502 -0.0288 2.4487 15 6 2.0217 -0.6945 3.6704 16 6 1.4920 0.0533 4.8955 17 6 1.9825 -0.6405 6.1679 18 6 1.4534 0.1077 7.3932 19 6 1.9445 -0.5857 8.6655 20 6 3.4629 -0.3545 8.8709 21 6 3.6717 -0.5436 10.3877 22 6 2.3127 -0.2729 11.0566 23 6 1.3245 0.0722 9.9234 24 1 -0.3634 0.5137 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.1301 -0.7208 -1.2494 31 1 1.6768 -1.7489 -1.2492 32 1 2.8604 -1.8834 -4.7335 33 1 3.1300 -0.7209 1.2495 34 1 1.6767 -1.7489 1.2493 35 1 1.8196 0.9436 2.4402 36 1 3.1116 -0.6939 3.6870 37 1 1.6586 -1.7221 3.6874 38 1 0.4022 0.0523 4.8788 39 1 1.8548 1.0810 4.8788 40 1 3.0724 -0.6398 6.1850 41 1 1.6195 -1.6681 6.1845 42 1 0.3636 0.1074 7.3763 43 1 1.8168 1.1352 7.3764 44 1 1.7172 -1.6513 8.6352 45 1 3.7387 0.6564 8.5710 46 1 4.0408 -1.0903 8.3117 47 1 4.4155 0.1643 10.7534 48 1 3.9937 -1.5639 10.5959 49 1 1.9747 -1.1621 11.5888 50 1 2.3971 0.5658 11.7476 51 1 0.3424 -0.3524 10.1311 52 1 1.2529 1.1522 9.7954 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174644835.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:40 Heat of formation + Delta-G solvation = -62.753423 kcal Electronic energy + Delta-G solvation = -21884.006150 eV Core-core repulsion = 18880.709848 eV Total energy + Delta-G solvation = -3003.296302 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -38.83754 -37.73714 -35.72225 -33.60506 -32.15445 -30.17125 -29.00698 -27.14877 -26.50107 -26.28219 -24.71502 -22.86350 -21.79882 -21.28827 -20.38784 -20.13312 -17.78905 -16.32361 -16.20436 -15.83046 -15.35001 -15.00149 -14.68705 -14.22186 -14.05852 -13.67512 -13.65141 -13.17459 -12.78495 -12.63948 -12.54260 -12.15904 -11.95895 -11.75530 -11.67890 -11.45192 -11.40576 -11.25414 -10.96763 -10.90773 -10.83338 -10.75499 -10.74042 -10.71613 -10.54030 -10.51660 -10.44849 -10.21389 -10.04976 -9.64724 -8.97939 -8.78487 -8.29893 -8.02270 -5.94178 -3.94087 3.33844 3.41563 3.45288 4.18230 4.30248 4.35314 4.47946 4.55668 4.80317 4.95360 5.04964 5.10272 5.13618 5.24106 5.31520 5.34265 5.40117 5.41629 5.48579 5.54722 5.61389 5.63962 5.72639 5.73586 5.76277 5.81562 5.82592 5.87319 5.95542 5.96978 6.02666 6.05402 6.14758 6.26295 6.27737 6.33349 6.38961 6.55343 6.70329 6.83025 6.86460 7.24454 7.27920 7.29956 7.46576 7.72053 7.76174 7.89177 8.06500 8.51213 9.11623 9.68558 11.17539 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.054848 B = 0.002035 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.378062 B =13755.638754 C =13932.670362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.059 4.059 3 C -0.129 4.129 4 C 0.033 3.967 5 C -0.505 4.505 6 H 0.060 0.940 7 C 0.053 3.947 8 N -0.898 5.898 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.285 1.285 13 C 0.070 3.930 14 N -0.688 5.688 15 C 0.057 3.943 16 C -0.116 4.116 17 C -0.117 4.117 18 C -0.110 4.110 19 C -0.093 4.093 20 C -0.120 4.120 21 C -0.127 4.127 22 C -0.126 4.126 23 C -0.122 4.122 24 H 0.042 0.958 25 H 0.054 0.946 26 H 0.039 0.961 27 H 0.039 0.961 28 H 0.064 0.936 29 H 0.033 0.967 30 H 0.012 0.988 31 H 0.015 0.985 32 H 0.258 0.742 33 H 0.022 0.978 34 H 0.065 0.935 35 H 0.337 0.663 36 H 0.022 0.978 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.057 0.943 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.074 0.926 45 H 0.065 0.935 46 H 0.064 0.936 47 H 0.060 0.940 48 H 0.061 0.939 49 H 0.060 0.940 50 H 0.060 0.940 51 H 0.063 0.937 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.226 2.922 27.317 27.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.060 4.060 3 C -0.186 4.186 4 C -0.004 4.004 5 C -0.544 4.544 6 H 0.078 0.922 7 C -0.147 4.147 8 N -0.538 5.538 9 Si 0.716 3.284 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.212 1.212 13 C -0.059 4.059 14 N -0.320 5.320 15 C -0.072 4.072 16 C -0.154 4.154 17 C -0.155 4.155 18 C -0.148 4.148 19 C -0.112 4.112 20 C -0.158 4.158 21 C -0.164 4.164 22 C -0.163 4.163 23 C -0.159 4.159 24 H 0.061 0.939 25 H 0.073 0.927 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.083 0.917 29 H 0.052 0.948 30 H 0.031 0.969 31 H 0.033 0.967 32 H 0.067 0.933 33 H 0.040 0.960 34 H 0.083 0.917 35 H 0.155 0.845 36 H 0.040 0.960 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.093 0.907 45 H 0.084 0.916 46 H 0.083 0.917 47 H 0.079 0.921 48 H 0.080 0.920 49 H 0.079 0.921 50 H 0.079 0.921 51 H 0.082 0.918 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.750 2.484 27.191 27.315 hybrid contribution 0.779 0.547 -0.953 1.346 sum 0.028 3.030 26.239 26.413 Atomic orbital electron populations 1.21595 0.95022 1.00548 1.00139 1.20634 0.95870 0.95004 0.94466 1.21768 0.99651 0.96794 1.00402 1.19129 0.95875 0.95214 0.90224 1.21289 1.30615 1.11868 0.90613 0.92221 1.25033 0.95458 0.95151 0.99089 1.69980 1.37428 1.23223 1.23143 0.86597 0.78569 0.79734 0.83472 1.19772 1.21217 1.21171 1.22098 0.96222 0.98092 0.89448 1.60583 1.63729 1.06324 1.01365 1.21949 0.96633 0.98724 0.89922 1.21566 1.01604 0.99048 0.93208 1.21561 1.00698 0.99510 0.93778 1.21581 1.00636 0.99221 0.93333 1.22183 0.94950 0.99867 0.94170 1.22452 0.96087 1.01693 0.95544 1.22142 0.97222 1.01363 0.95702 1.22128 0.95216 1.01118 0.97869 1.22426 0.98311 1.00668 0.94523 0.93883 0.92724 0.94214 0.94153 0.91726 0.94799 0.96943 0.96686 0.93251 0.96022 0.91692 0.84468 0.95959 0.91459 0.91231 0.92417 0.92143 0.92036 0.91917 0.92014 0.90728 0.91605 0.91710 0.92091 0.92050 0.92069 0.92103 0.91849 0.91613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.30 8.06 37.16 0.30 -2.00 16 2 C -0.06 -1.21 0.60 -154.51 -0.09 -1.31 16 3 C -0.13 -2.44 7.89 37.16 0.29 -2.15 16 4 C 0.03 0.85 4.04 -27.89 -0.11 0.74 16 5 C -0.51 -14.00 7.65 -34.44 -0.26 -14.27 16 6 H 0.06 1.61 5.68 -52.49 -0.30 1.31 16 7 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 8 N -0.90 -27.11 13.29 55.43 0.74 -26.37 16 9 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 10 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 13 C 0.07 1.25 4.65 -3.83 -0.02 1.24 16 14 N -0.69 -10.33 5.71 -113.78 -0.65 -10.98 16 15 C 0.06 0.72 5.68 -3.83 -0.02 0.70 16 16 C -0.12 -1.20 5.47 -26.74 -0.15 -1.34 16 17 C -0.12 -1.02 5.11 -26.73 -0.14 -1.15 16 18 C -0.11 -0.85 4.72 -26.73 -0.13 -0.98 16 19 C -0.09 -0.67 2.86 -88.59 -0.25 -0.92 16 20 C -0.12 -0.85 5.71 -25.03 -0.14 -0.99 16 21 C -0.13 -0.82 6.80 -25.61 -0.17 -1.00 16 22 C -0.13 -0.79 6.80 -25.62 -0.17 -0.96 16 23 C -0.12 -0.81 6.27 -25.07 -0.16 -0.97 16 24 H 0.04 0.77 7.60 -51.93 -0.39 0.37 16 25 H 0.05 1.15 6.62 -51.93 -0.34 0.81 16 26 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.06 1.32 6.62 -51.93 -0.34 0.98 16 29 H 0.03 0.54 6.57 -51.93 -0.34 0.20 16 30 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 33 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.34 4.84 6.77 -39.29 -0.27 4.57 16 36 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.53 7.66 -51.93 -0.40 0.13 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.48 8.00 -51.93 -0.42 0.07 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.07 0.48 7.95 -51.93 -0.41 0.07 16 46 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 47 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 50 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 51 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 52 H 0.07 0.44 8.05 -51.93 -0.42 0.02 16 LS Contribution 392.13 15.07 5.91 5.91 Total: -1.00 -28.91 392.13 -11.15 -40.06 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -10.80 Total: -1.43 kcal Atomic # 6 Polarization: -22.63 SS G_CDS: -1.32 Total: -23.95 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: 0.09 Total: -37.35 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -28.91 -11.15 -40.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174644835.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.697 kcal (2) G-P(sol) polarization free energy of solvation -28.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds