Wall clock time and date at job start Tue Mar 31 2020 05:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.52997 * 109.47164 * 239.99836 * 2 1 3 5 5 C 1.52999 * 109.46626 * 119.99539 * 2 1 3 6 6 C 1.53002 * 109.47302 * 60.00257 * 5 2 1 7 7 C 1.52993 * 109.47392 * 179.97438 * 6 5 2 8 8 C 1.52997 * 109.47024 * 60.00071 * 7 6 5 9 9 C 1.53006 * 109.47164 * 60.00057 * 8 7 6 10 10 N 1.46895 * 109.47374 * 175.00207 * 9 8 7 11 11 C 1.46891 * 111.00390 * 179.97438 * 10 9 8 12 12 C 1.52999 * 109.47740 * 179.97438 * 11 10 9 13 13 C 1.52995 * 109.47512 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.47181 * 180.02562 * 13 12 11 15 15 H 1.08001 * 120.00217 * 0.02562 * 14 13 12 16 16 C 1.37885 * 120.00107 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00008 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 119.99795 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47085 * 89.99935 * 18 16 14 20 20 H 1.48496 * 109.46957 * 209.99801 * 18 16 14 21 21 H 1.48497 * 109.47296 * 329.99947 * 18 16 14 22 22 C 1.52997 * 109.47232 * 299.99958 * 8 7 6 23 23 C 1.52997 * 109.47592 * 300.00035 * 5 2 1 24 24 H 1.09004 * 109.47297 * 300.00280 * 1 2 3 25 25 H 1.09001 * 109.46998 * 59.99868 * 1 2 3 26 26 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47153 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47289 * 299.99953 * 3 2 1 29 29 H 1.09004 * 109.47261 * 59.99697 * 3 2 1 30 30 H 1.09000 * 109.47140 * 299.99948 * 4 2 1 31 31 H 1.09001 * 109.47375 * 59.99966 * 4 2 1 32 32 H 1.09002 * 109.46777 * 180.02562 * 4 2 1 33 33 H 1.09002 * 109.46719 * 180.02562 * 5 2 1 34 34 H 1.09004 * 109.47006 * 59.99583 * 6 5 2 35 35 H 1.09002 * 109.46838 * 300.00086 * 6 5 2 36 36 H 1.09002 * 109.47722 * 300.00185 * 7 6 5 37 37 H 1.09000 * 109.47250 * 180.02562 * 7 6 5 38 38 H 1.09001 * 109.47375 * 180.02562 * 8 7 6 39 39 H 1.09007 * 109.46744 * 294.99886 * 9 8 7 40 40 H 1.08995 * 109.46794 * 55.00131 * 9 8 7 41 41 H 1.00909 * 111.00042 * 303.95547 * 10 9 8 42 42 H 1.09001 * 109.47359 * 300.00191 * 11 10 9 43 43 H 1.09004 * 109.47151 * 59.99758 * 11 10 9 44 44 H 1.09001 * 109.47219 * 300.00727 * 12 11 10 45 45 H 1.09004 * 109.46628 * 59.99888 * 12 11 10 46 46 H 1.09002 * 109.47220 * 299.99868 * 13 12 11 47 47 H 1.08993 * 109.47181 * 60.00378 * 13 12 11 48 48 H 0.97001 * 120.00267 * 180.02562 * 17 16 14 49 49 H 1.09004 * 109.47261 * 179.97438 * 22 8 7 50 50 H 1.09002 * 109.47153 * 299.99992 * 22 8 7 51 51 H 1.09000 * 109.47140 * 300.00346 * 23 5 2 52 52 H 1.09002 * 109.47045 * 60.00253 * 23 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0399 -0.7212 1.2493 6 6 1.5299 -2.1637 1.2494 7 6 2.0403 -2.8850 2.4984 8 6 1.5307 -2.1639 3.7478 9 6 0.0006 -2.1639 3.7483 10 7 -0.4887 -1.5787 5.0036 11 6 -1.9571 -1.5615 5.0394 12 6 -2.4281 -0.9471 6.3590 13 6 -3.9575 -0.9298 6.3965 14 6 -4.4213 -0.3240 7.6960 15 1 -3.6977 0.0152 8.4224 16 6 -5.7697 -0.2018 7.9572 17 7 -6.1745 0.3264 9.0915 18 14 -7.0214 -0.7879 6.7006 19 1 -7.3533 -2.2120 6.9595 20 1 -8.2529 0.0348 6.8078 21 1 -6.4529 -0.6526 5.3354 22 6 2.0407 -0.7214 3.7478 23 6 1.5299 0.0001 2.4985 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1301 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6767 -1.7489 -1.2492 31 1 1.6767 -0.2075 -2.1392 32 1 3.1301 -0.7216 -1.2489 33 1 3.1300 -0.7208 1.2496 34 1 1.8933 -2.6776 0.3594 35 1 0.4399 -2.1636 1.2493 36 1 3.1303 -2.8851 2.4981 37 1 1.6773 -3.9128 2.4982 38 1 1.8947 -2.6775 4.6377 39 1 -0.3629 -1.5743 2.9066 40 1 -0.3626 -3.1876 3.6588 41 1 -0.1129 -2.0687 5.8017 42 1 -2.3339 -0.9676 4.2067 43 1 -2.3344 -2.5810 4.9586 44 1 -2.0512 -1.5413 7.1915 45 1 -2.0507 0.0724 6.4402 46 1 -4.3347 -0.3358 5.5640 47 1 -4.3344 -1.9493 6.3155 48 1 -7.1230 0.4120 9.2755 49 1 1.6772 -0.2075 4.6377 50 1 3.1307 -0.7214 3.7475 51 1 1.8933 1.0278 2.4985 52 1 0.4399 0.0001 2.4985 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183731721.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:57 Heat of formation + Delta-G solvation = -54.393187 kcal Electronic energy + Delta-G solvation = -23147.367006 eV Core-core repulsion = 20144.433231 eV Total energy + Delta-G solvation = -3002.933775 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.23522 -37.19485 -35.43416 -33.26842 -31.49469 -31.02183 -29.73733 -27.55407 -27.45277 -26.88648 -24.36616 -22.69032 -22.49697 -21.86945 -20.13046 -18.96610 -18.20676 -16.69366 -16.23894 -15.65219 -15.05791 -14.67614 -14.56307 -14.27289 -14.19314 -13.91304 -13.66883 -13.47638 -13.24717 -12.72180 -12.52878 -12.44027 -12.34745 -12.04753 -11.93579 -11.87682 -11.75194 -11.60734 -11.28610 -11.22606 -11.01633 -10.87783 -10.78033 -10.75878 -10.67789 -10.07668 -9.93795 -9.90842 -9.85337 -9.69093 -9.50610 -9.13577 -8.50676 -8.14061 -6.01042 -3.98503 3.32409 3.39685 3.43904 4.32576 4.43192 4.48016 4.54284 4.58056 4.76525 4.85626 4.97796 5.14317 5.23824 5.28234 5.30828 5.32941 5.37359 5.46362 5.49026 5.51588 5.54073 5.59921 5.65839 5.67921 5.71972 5.74812 5.76469 5.79397 5.86913 5.89600 5.91896 5.95730 6.05022 6.08958 6.16540 6.22346 6.22823 6.26344 6.35959 6.45543 6.53009 6.59928 6.63910 6.95851 7.28858 7.40549 7.48343 7.64902 7.84046 8.58628 9.04769 9.61766 11.12619 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.022158 B = 0.003055 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.338911 B = 9163.714324 C = 9657.173412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.065 4.065 3 C -0.144 4.144 4 C -0.143 4.143 5 C -0.073 4.073 6 C -0.119 4.119 7 C -0.113 4.113 8 C -0.084 4.084 9 C 0.060 3.940 10 N -0.688 5.688 11 C 0.058 3.942 12 C -0.099 4.099 13 C -0.013 4.013 14 C -0.518 4.518 15 H 0.072 0.928 16 C 0.064 3.936 17 N -0.905 5.905 18 Si 0.880 3.120 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.266 1.266 22 C -0.105 4.105 23 C -0.118 4.118 24 H 0.061 0.939 25 H 0.050 0.950 26 H 0.056 0.944 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.065 0.935 39 H 0.076 0.924 40 H 0.020 0.980 41 H 0.336 0.664 42 H 0.064 0.936 43 H 0.021 0.979 44 H 0.050 0.950 45 H 0.061 0.939 46 H 0.015 0.985 47 H 0.008 0.992 48 H 0.262 0.738 49 H 0.075 0.925 50 H 0.050 0.950 51 H 0.059 0.941 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.592 -4.255 -20.272 28.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.065 4.065 3 C -0.201 4.201 4 C -0.200 4.200 5 C -0.092 4.092 6 C -0.156 4.156 7 C -0.151 4.151 8 C -0.103 4.103 9 C -0.070 4.070 10 N -0.318 5.318 11 C -0.071 4.071 12 C -0.137 4.137 13 C -0.051 4.051 14 C -0.556 4.556 15 H 0.090 0.910 16 C -0.136 4.136 17 N -0.545 5.545 18 Si 0.708 3.292 19 H -0.204 1.204 20 H -0.214 1.214 21 H -0.190 1.190 22 C -0.142 4.142 23 C -0.155 4.155 24 H 0.080 0.920 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.094 0.906 40 H 0.039 0.961 41 H 0.154 0.846 42 H 0.083 0.917 43 H 0.039 0.961 44 H 0.069 0.931 45 H 0.080 0.920 46 H 0.033 0.967 47 H 0.026 0.974 48 H 0.072 0.928 49 H 0.094 0.906 50 H 0.069 0.931 51 H 0.078 0.922 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 19.473 -3.553 -20.406 28.430 hybrid contribution -1.001 -1.281 -0.401 1.675 sum 18.472 -4.834 -20.807 28.240 Atomic orbital electron populations 1.21999 0.94669 1.01896 1.01842 1.20541 0.95717 0.95285 0.94934 1.21928 1.00653 0.95671 1.01820 1.21927 1.00675 1.00386 0.97003 1.21164 0.99618 0.94453 0.93947 1.21728 1.01263 0.95297 0.97320 1.21546 1.00335 0.98585 0.94653 1.21114 0.94977 0.96728 0.97488 1.22114 0.94336 0.96791 0.93723 1.60509 1.08961 1.58554 1.03781 1.22119 0.86106 0.98605 1.00265 1.21432 0.97893 1.00446 0.93892 1.19540 0.91693 0.96158 0.97698 1.21165 0.92705 1.39894 1.01833 0.91036 1.25047 0.98555 0.94815 0.95209 1.69918 1.15379 1.45451 1.23702 0.86766 0.80919 0.78810 0.82711 1.20399 1.21409 1.19035 1.21433 0.99001 0.94989 0.98819 1.21723 1.01721 0.98530 0.93497 0.92029 0.93112 0.92491 0.92966 0.93029 0.92113 0.92450 0.93019 0.92961 0.91725 0.92213 0.91437 0.92132 0.92410 0.91699 0.90566 0.96143 0.84649 0.91712 0.96071 0.93141 0.91983 0.96673 0.97363 0.92799 0.90601 0.93132 0.92203 0.90931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 7.77 37.16 0.29 -0.99 16 2 C -0.06 -0.51 0.57 -154.51 -0.09 -0.60 16 3 C -0.14 -1.12 8.12 37.16 0.30 -0.82 16 4 C -0.14 -1.03 8.12 37.16 0.30 -0.73 16 5 C -0.07 -0.61 1.55 -90.62 -0.14 -0.75 16 6 C -0.12 -0.99 4.22 -26.73 -0.11 -1.10 16 7 C -0.11 -0.97 5.45 -26.74 -0.15 -1.12 16 8 C -0.08 -0.83 2.81 -90.62 -0.25 -1.09 16 9 C 0.06 0.70 4.37 -3.82 -0.02 0.68 16 10 N -0.69 -9.54 5.95 -113.78 -0.68 -10.22 16 11 C 0.06 0.96 5.69 -3.83 -0.02 0.93 16 12 C -0.10 -1.99 5.41 -26.73 -0.14 -2.14 16 13 C -0.01 -0.32 4.04 -27.89 -0.11 -0.43 16 14 C -0.52 -15.12 9.66 -34.44 -0.33 -15.45 16 15 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 16 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 17 N -0.91 -28.43 13.96 55.43 0.77 -27.66 16 18 Si 0.88 22.13 27.47 -169.99 -4.67 17.46 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 21 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 22 C -0.10 -1.06 5.34 -26.71 -0.14 -1.20 16 23 C -0.12 -1.14 4.23 -26.71 -0.11 -1.25 16 24 H 0.06 0.59 6.43 -51.93 -0.33 0.26 16 25 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.49 6.43 -51.93 -0.33 0.16 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.50 6.43 -51.93 -0.33 0.17 16 30 H 0.06 0.41 6.43 -51.93 -0.33 0.07 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.46 6.43 -51.93 -0.33 0.13 16 35 H 0.07 0.62 4.83 -51.93 -0.25 0.37 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.92 4.83 -51.93 -0.25 0.67 16 40 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 41 H 0.34 4.46 8.73 -39.29 -0.34 4.12 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 44 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 46 H 0.01 0.37 7.20 -51.93 -0.37 -0.01 16 47 H 0.01 0.20 7.57 -51.93 -0.39 -0.20 16 48 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 49 H 0.08 0.89 7.75 -51.93 -0.40 0.49 16 50 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 51 H 0.06 0.58 6.43 -51.93 -0.33 0.24 16 52 H 0.07 0.81 4.61 -51.93 -0.24 0.57 16 LS Contribution 373.48 15.07 5.63 5.63 Total: -1.00 -29.91 373.48 -9.96 -39.87 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -10.18 Total: -0.85 kcal Atomic # 6 Polarization: -23.40 SS G_CDS: -0.83 Total: -24.23 kcal Atomic # 7 Polarization: -37.97 SS G_CDS: 0.10 Total: -37.88 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.67 Total: 17.46 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.91 -9.96 -39.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183731721.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.526 kcal (2) G-P(sol) polarization free energy of solvation -29.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds