Wall clock time and date at job start Tue Mar 31 2020 05:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46998 * 2 1 4 4 C 1.53006 * 109.46888 * 239.99955 * 2 1 3 5 5 H 1.08997 * 109.46768 * 175.34510 * 4 2 1 6 6 C 1.53003 * 109.46846 * 55.34385 * 4 2 1 7 7 C 1.52998 * 109.46744 * 179.97438 * 6 4 2 8 8 C 1.53000 * 109.47131 * 60.00091 * 7 6 4 9 9 C 1.53002 * 109.47401 * 299.99961 * 8 7 6 10 10 C 1.52998 * 109.46946 * 59.99926 * 9 8 7 11 11 H 1.08997 * 109.47500 * 59.99628 * 10 9 8 12 12 N 1.46902 * 109.47096 * 180.02562 * 10 9 8 13 13 C 1.46896 * 110.99748 * 275.00053 * 12 10 9 14 14 C 1.52998 * 109.47002 * 180.02562 * 13 12 10 15 15 C 1.53002 * 109.47071 * 299.99617 * 14 13 12 16 16 C 1.52997 * 109.47276 * 59.99815 * 14 13 12 17 17 C 1.53001 * 109.47272 * 179.97438 * 14 13 12 18 18 C 1.50700 * 109.46982 * 179.97438 * 17 14 13 19 19 H 1.07990 * 120.00194 * 0.02562 * 18 17 14 20 20 C 1.37887 * 119.99711 * 180.02562 * 18 17 14 21 21 N 1.31509 * 120.00066 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99671 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47149 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.46724 * 119.99992 * 22 20 18 25 25 H 1.48500 * 109.46807 * 239.99446 * 22 20 18 26 26 H 1.09002 * 109.47120 * 60.00006 * 1 2 3 27 27 H 1.09003 * 109.46816 * 299.99791 * 1 2 3 28 28 H 1.09004 * 109.47057 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47123 * 120.00471 * 2 1 3 30 30 H 1.08991 * 109.47226 * 65.71045 * 3 2 1 31 31 H 1.09010 * 109.46607 * 185.70913 * 3 2 1 32 32 H 1.09001 * 109.47505 * 305.70633 * 3 2 1 33 33 H 1.08996 * 109.47264 * 300.00118 * 6 4 2 34 34 H 1.09003 * 109.47044 * 60.00663 * 6 4 2 35 35 H 1.08994 * 109.47341 * 180.02562 * 7 6 4 36 36 H 1.09007 * 109.47583 * 300.00608 * 7 6 4 37 37 H 1.08997 * 109.47137 * 60.00197 * 8 7 6 38 38 H 1.09003 * 109.47025 * 179.97438 * 8 7 6 39 39 H 1.09004 * 109.46950 * 180.02562 * 9 8 7 40 40 H 1.08996 * 109.46893 * 299.99751 * 9 8 7 41 41 H 1.00901 * 110.99824 * 38.95525 * 12 10 9 42 42 H 1.09007 * 109.47057 * 299.99551 * 13 12 10 43 43 H 1.09000 * 109.47704 * 59.99980 * 13 12 10 44 44 H 1.09003 * 109.46677 * 60.00127 * 15 14 13 45 45 H 1.09001 * 109.47299 * 179.97438 * 15 14 13 46 46 H 1.08998 * 109.47429 * 300.00459 * 15 14 13 47 47 H 1.08998 * 109.47463 * 59.99975 * 16 14 13 48 48 H 1.09001 * 109.47185 * 180.02562 * 16 14 13 49 49 H 1.09003 * 109.47210 * 300.00325 * 16 14 13 50 50 H 1.08996 * 109.47167 * 300.00262 * 17 14 13 51 51 H 1.09001 * 109.46868 * 60.00375 * 17 14 13 52 52 H 0.97001 * 120.00246 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 1 3.1268 -0.6496 -1.2920 6 6 1.4366 -0.0708 -2.4958 7 6 1.9470 -0.7916 -3.7450 8 6 1.5353 -2.2641 -3.6881 9 6 2.1387 -2.9147 -2.4417 10 6 1.6282 -2.1938 -1.1924 11 1 0.5415 -2.2657 -1.1499 12 7 2.2080 -2.8180 0.0044 13 6 1.4157 -3.9801 0.4281 14 6 2.0487 -4.6017 1.6747 15 6 3.4766 -5.0477 1.3532 16 6 2.0791 -3.5670 2.8012 17 6 1.2232 -5.8118 2.1164 18 6 1.8471 -6.4244 3.3439 19 1 2.7425 -5.9935 3.7668 20 6 1.2747 -7.5351 3.9269 21 7 0.1840 -8.0595 3.4122 22 14 2.0476 -8.2939 5.4488 23 1 3.2583 -7.5215 5.8266 24 1 1.0713 -8.2634 6.5674 25 1 2.4277 -9.7005 5.1619 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 0.8899 30 1 1.7626 1.9259 0.9366 31 1 3.1253 1.4441 -0.1022 32 1 1.5957 1.9850 -0.8345 33 1 0.3498 -0.1424 -2.4530 34 1 1.7303 0.9781 -2.5365 35 1 1.5175 -0.3280 -4.6330 36 1 3.0339 -0.7197 -3.7875 37 1 0.4486 -2.3362 -3.6457 38 1 1.8986 -2.7776 -4.5784 39 1 1.8457 -3.9638 -2.4015 40 1 3.2254 -2.8427 -2.4842 41 1 3.1712 -3.0746 -0.1522 42 1 0.3986 -3.6623 0.6576 43 1 1.3937 -4.7172 -0.3746 44 1 4.0644 -4.1853 1.0387 45 1 3.9277 -5.4902 2.2414 46 1 3.4550 -5.7849 0.5506 47 1 1.0619 -3.2492 3.0303 48 1 2.5304 -4.0097 3.6891 49 1 2.6669 -2.7046 2.4868 50 1 0.2062 -5.4938 2.3455 51 1 1.2013 -6.5492 1.3140 52 1 -0.2189 -8.8406 3.8226 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229700937.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:20 Heat of formation + Delta-G solvation = -53.860987 kcal Electronic energy + Delta-G solvation = -23981.116791 eV Core-core repulsion = 20978.206094 eV Total energy + Delta-G solvation = -3002.910697 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.72737 -37.18291 -34.95082 -33.78430 -32.10894 -29.55589 -28.54149 -27.13385 -26.79821 -26.28250 -24.90782 -23.43612 -22.56996 -21.34873 -20.41551 -18.96319 -17.70956 -16.21041 -15.77805 -15.02505 -14.90877 -14.57136 -14.44774 -14.25250 -13.81179 -13.60330 -13.24659 -13.07710 -12.79761 -12.66720 -12.36146 -12.24472 -11.96718 -11.86069 -11.70910 -11.44198 -11.30397 -11.11102 -10.96703 -10.86334 -10.80189 -10.74106 -10.67868 -10.46812 -10.22753 -10.20502 -10.11636 -10.05240 -9.86393 -9.62744 -8.96006 -8.77260 -8.29681 -7.90291 -5.94053 -3.93840 3.33712 3.41577 3.45166 4.40389 4.52442 4.60724 4.72174 4.93757 5.05282 5.09976 5.18594 5.31102 5.40996 5.41903 5.43192 5.51982 5.58371 5.65968 5.71026 5.71478 5.77822 5.85921 5.93178 5.94590 6.00201 6.00540 6.03571 6.08074 6.08662 6.15356 6.19171 6.32011 6.33799 6.40415 6.43959 6.56453 6.57894 6.66760 6.72531 6.85367 6.87344 7.25488 7.30285 7.31467 7.51330 7.73134 7.79842 7.90034 8.06776 8.51599 9.11985 9.68908 11.17681 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.025315 B = 0.003776 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.817371 B = 7414.032366 C = 7908.945002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.147 4.147 4 C -0.065 4.065 5 H 0.064 0.936 6 C -0.118 4.118 7 C -0.119 4.119 8 C -0.115 4.115 9 C -0.150 4.150 10 C 0.091 3.909 11 H 0.076 0.924 12 N -0.678 5.678 13 C 0.072 3.928 14 C -0.057 4.057 15 C -0.128 4.128 16 C -0.115 4.115 17 C 0.033 3.967 18 C -0.505 4.505 19 H 0.059 0.941 20 C 0.054 3.946 21 N -0.898 5.898 22 Si 0.886 3.114 23 H -0.273 1.273 24 H -0.285 1.285 25 H -0.286 1.286 26 H 0.049 0.951 27 H 0.047 0.953 28 H 0.056 0.944 29 H 0.090 0.910 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.056 0.944 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.336 0.664 42 H 0.063 0.937 43 H 0.021 0.979 44 H 0.033 0.967 45 H 0.062 0.938 46 H 0.039 0.961 47 H 0.038 0.962 48 H 0.052 0.948 49 H 0.042 0.958 50 H 0.014 0.986 51 H 0.011 0.989 52 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.288 16.562 -12.746 21.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.103 4.103 3 C -0.204 4.204 4 C -0.084 4.084 5 H 0.083 0.917 6 C -0.156 4.156 7 C -0.157 4.157 8 C -0.153 4.153 9 C -0.189 4.189 10 C -0.020 4.020 11 H 0.094 0.906 12 N -0.308 5.308 13 C -0.057 4.057 14 C -0.058 4.058 15 C -0.185 4.185 16 C -0.172 4.172 17 C -0.004 4.004 18 C -0.543 4.543 19 H 0.077 0.923 20 C -0.146 4.146 21 N -0.538 5.538 22 Si 0.715 3.285 23 H -0.198 1.198 24 H -0.212 1.212 25 H -0.212 1.212 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.108 0.892 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.156 0.844 42 H 0.081 0.919 43 H 0.039 0.961 44 H 0.052 0.948 45 H 0.081 0.919 46 H 0.058 0.942 47 H 0.057 0.943 48 H 0.071 0.929 49 H 0.061 0.939 50 H 0.032 0.968 51 H 0.030 0.970 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.857 16.850 -12.260 21.033 hybrid contribution 0.510 -1.337 0.087 1.434 sum 3.366 15.513 -12.173 20.004 Atomic orbital electron populations 1.21900 0.96022 1.01721 1.00731 1.21017 0.95282 0.94826 0.99217 1.21894 1.00588 0.96946 1.01010 1.21093 0.99682 0.93805 0.93865 0.91728 1.21703 1.00791 0.99004 0.94065 1.21543 1.00764 0.95530 0.97816 1.21463 1.00650 0.95606 0.97572 1.22288 1.00598 0.99953 0.96035 1.21628 0.99347 0.93359 0.87650 0.90589 1.60655 1.06099 1.31033 1.33040 1.22094 0.97049 0.89865 0.96667 1.20610 0.95445 0.96763 0.92962 1.21761 0.96634 0.98706 1.01440 1.21585 1.00355 0.97180 0.98077 1.19122 0.94532 0.90785 0.95959 1.21287 1.10649 1.11339 1.11056 0.92263 1.25016 0.95076 0.97218 0.97304 1.69976 1.20208 1.22972 1.40636 0.86625 0.79341 0.79122 0.83454 1.19774 1.21167 1.21224 0.93248 0.93382 0.92472 0.89206 0.93215 0.93141 0.93233 0.91711 0.92010 0.92498 0.92304 0.92140 0.92503 0.92053 0.92140 0.84443 0.91851 0.96081 0.94810 0.91859 0.94226 0.94267 0.92874 0.93868 0.96763 0.97028 0.93265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 8.46 37.16 0.31 -1.29 16 2 C -0.09 -0.93 2.61 -90.62 -0.24 -1.17 16 3 C -0.15 -1.41 8.79 37.16 0.33 -1.08 16 4 C -0.07 -0.68 1.68 -90.61 -0.15 -0.84 16 5 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 6 C -0.12 -1.08 4.47 -26.73 -0.12 -1.20 16 7 C -0.12 -1.05 5.92 -26.73 -0.16 -1.20 16 8 C -0.11 -1.11 5.92 -26.73 -0.16 -1.27 16 9 C -0.15 -1.67 5.17 -26.73 -0.14 -1.81 16 10 C 0.09 1.08 1.66 -67.71 -0.11 0.96 16 11 H 0.08 0.99 6.22 -51.93 -0.32 0.67 16 12 N -0.68 -9.39 4.61 -106.73 -0.49 -9.88 16 13 C 0.07 1.22 4.45 -3.83 -0.02 1.21 16 14 C -0.06 -1.14 0.60 -154.51 -0.09 -1.23 16 15 C -0.13 -2.38 7.89 37.16 0.29 -2.09 16 16 C -0.11 -2.21 8.06 37.16 0.30 -1.91 16 17 C 0.03 0.85 4.04 -27.88 -0.11 0.73 16 18 C -0.50 -13.87 7.65 -34.44 -0.26 -14.14 16 19 H 0.06 1.59 5.68 -52.49 -0.30 1.29 16 20 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 21 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 22 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 23 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 H 0.05 0.48 6.35 -51.93 -0.33 0.15 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.70 6.56 -51.93 -0.34 0.36 16 29 H 0.09 1.18 7.46 -51.93 -0.39 0.79 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.47 8.14 -51.92 -0.42 0.05 16 32 H 0.05 0.43 6.84 -51.93 -0.36 0.08 16 33 H 0.06 0.61 6.35 -51.93 -0.33 0.28 16 34 H 0.06 0.53 6.68 -51.93 -0.35 0.18 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.52 8.14 -51.92 -0.42 0.09 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.76 7.46 -51.93 -0.39 0.38 16 40 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 41 H 0.34 4.61 6.51 -39.29 -0.26 4.35 16 42 H 0.06 1.13 8.06 -51.93 -0.42 0.72 16 43 H 0.02 0.37 7.44 -51.93 -0.39 -0.02 16 44 H 0.03 0.53 6.57 -51.93 -0.34 0.19 16 45 H 0.06 1.28 6.62 -51.93 -0.34 0.94 16 46 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 48 H 0.05 1.10 6.62 -51.93 -0.34 0.76 16 49 H 0.04 0.74 7.60 -51.93 -0.39 0.35 16 50 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 51 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 52 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 374.76 15.07 5.65 5.65 Total: -1.00 -28.08 374.76 -9.77 -37.85 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -10.21 Total: 0.83 kcal Atomic # 6 Polarization: -24.44 SS G_CDS: -0.43 Total: -24.87 kcal Atomic # 7 Polarization: -36.40 SS G_CDS: 0.24 Total: -36.15 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -28.08 -9.77 -37.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229700937.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.014 kcal (2) G-P(sol) polarization free energy of solvation -28.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds