Wall clock time and date at job start Tue Mar 31 2020 05:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46918 * 2 1 4 4 C 1.52997 * 109.46891 * 120.00021 * 2 1 3 5 5 H 1.09001 * 109.47300 * 299.99993 * 4 2 1 6 6 C 1.52999 * 109.46989 * 60.00174 * 4 2 1 7 7 C 1.53004 * 109.46825 * 179.97438 * 6 4 2 8 8 C 1.52992 * 109.47693 * 299.99814 * 7 6 4 9 9 C 1.53011 * 109.46817 * 59.99669 * 8 7 6 10 10 C 1.52994 * 109.47390 * 300.00523 * 9 8 7 11 11 H 1.09003 * 109.47340 * 179.97438 * 10 9 8 12 12 N 1.46906 * 109.47113 * 299.99726 * 10 9 8 13 13 C 1.46901 * 110.99793 * 275.00325 * 12 10 9 14 14 C 1.53000 * 109.46769 * 180.02562 * 13 12 10 15 15 C 1.53002 * 109.47233 * 299.99531 * 14 13 12 16 16 C 1.52996 * 109.47328 * 60.00000 * 14 13 12 17 17 C 1.53001 * 109.46886 * 180.02562 * 14 13 12 18 18 C 1.50697 * 109.47291 * 179.97438 * 17 14 13 19 19 H 1.08006 * 119.99920 * 359.97438 * 18 17 14 20 20 C 1.37876 * 120.00428 * 179.97438 * 18 17 14 21 21 N 1.31519 * 119.99563 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00432 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.46678 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47258 * 119.99423 * 22 20 18 25 25 H 1.48493 * 109.47346 * 240.00028 * 22 20 18 26 26 H 1.08998 * 109.47549 * 300.00196 * 1 2 3 27 27 H 1.09010 * 109.47006 * 59.99640 * 1 2 3 28 28 H 1.08992 * 109.47116 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47143 * 240.00111 * 2 1 3 30 30 H 1.09001 * 109.47123 * 60.00099 * 3 2 1 31 31 H 1.09005 * 109.47105 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47759 * 299.99908 * 3 2 1 33 33 H 1.09001 * 109.47247 * 59.99787 * 6 4 2 34 34 H 1.09005 * 109.47349 * 299.99804 * 6 4 2 35 35 H 1.09004 * 109.46693 * 179.97438 * 7 6 4 36 36 H 1.08993 * 109.46820 * 60.00724 * 7 6 4 37 37 H 1.08996 * 109.47325 * 300.00659 * 8 7 6 38 38 H 1.08996 * 109.47812 * 180.02562 * 8 7 6 39 39 H 1.08995 * 109.46871 * 179.97438 * 9 8 7 40 40 H 1.08996 * 109.46365 * 60.00402 * 9 8 7 41 41 H 1.00899 * 110.99995 * 151.04723 * 12 10 9 42 42 H 1.09002 * 109.47401 * 59.99808 * 13 12 10 43 43 H 1.09001 * 109.46874 * 299.99821 * 13 12 10 44 44 H 1.09000 * 109.46986 * 60.00203 * 15 14 13 45 45 H 1.08993 * 109.47662 * 180.02562 * 15 14 13 46 46 H 1.09002 * 109.47075 * 300.00932 * 15 14 13 47 47 H 1.08992 * 109.47554 * 59.99639 * 16 14 13 48 48 H 1.09004 * 109.47108 * 179.97438 * 16 14 13 49 49 H 1.09000 * 109.46870 * 299.99783 * 16 14 13 50 50 H 1.09001 * 109.47109 * 299.99380 * 17 14 13 51 51 H 1.09002 * 109.47508 * 59.99571 * 17 14 13 52 52 H 0.97000 * 119.99425 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 1 1.6766 -0.2074 2.1392 6 6 1.5299 -2.1637 1.2492 7 6 2.0404 -2.8852 2.4981 8 6 3.5704 -2.8853 2.4977 9 6 4.0804 -1.4427 2.4976 10 6 3.5700 -0.7212 1.2487 11 1 3.9329 0.3066 1.2489 12 7 4.0592 -1.4136 0.0489 13 6 5.4065 -0.9526 -0.3122 14 6 5.8807 -1.6941 -1.5637 15 6 5.9143 -3.1978 -1.2836 16 6 4.9183 -1.4118 -2.7191 17 6 7.2841 -1.2144 -1.9395 18 6 7.7515 -1.9451 -3.1718 19 1 7.1117 -2.6786 -3.6400 20 6 8.9959 -1.6773 -3.7018 21 7 9.7747 -0.7837 -3.1320 22 14 9.5750 -2.5825 -5.2297 23 1 8.5201 -3.5287 -5.6741 24 1 9.8493 -1.6028 -6.3114 25 1 10.8159 -3.3363 -4.9181 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.8933 -2.6776 0.3592 34 1 0.4399 -2.1638 1.2491 35 1 1.6767 -3.9127 2.4983 36 1 1.6773 -2.3715 3.3882 37 1 3.9334 -3.3989 1.6075 38 1 3.9341 -3.3996 3.3871 39 1 5.1704 -1.4427 2.4977 40 1 3.7174 -0.9290 3.3878 41 1 3.4186 -1.2977 -0.7219 42 1 6.0921 -1.1532 0.5111 43 1 5.3824 0.1186 -0.5122 44 1 4.9147 -3.5399 -1.0156 45 1 6.2525 -3.7261 -2.1750 46 1 6.5999 -3.3988 -0.4604 47 1 4.8943 -0.3406 -2.9187 48 1 5.2564 -1.9397 -3.6109 49 1 3.9186 -1.7539 -2.4511 50 1 7.2606 -0.1431 -2.1390 51 1 7.9696 -1.4158 -1.1163 52 1 10.6500 -0.5951 -3.5051 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229700945.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:23 Heat of formation + Delta-G solvation = -50.332133 kcal Electronic energy + Delta-G solvation = -24279.350252 eV Core-core repulsion = 21276.592577 eV Total energy + Delta-G solvation = -3002.757675 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.85717 -37.01120 -35.02814 -33.44281 -32.02947 -29.88315 -28.67782 -27.24427 -26.80193 -26.28231 -24.95163 -23.07723 -22.51710 -21.74322 -19.97182 -18.75560 -17.89008 -16.26250 -15.85443 -15.74520 -14.83679 -14.46135 -14.22188 -13.95541 -13.51699 -13.46095 -13.32840 -13.25153 -12.82972 -12.60352 -12.35104 -12.32419 -11.98013 -11.74357 -11.66306 -11.61039 -11.16749 -11.14881 -11.05962 -10.94335 -10.84251 -10.72654 -10.64013 -10.46619 -10.39106 -10.19873 -10.07052 -9.86022 -9.74149 -9.60148 -8.95895 -8.76588 -8.29340 -7.89675 -5.93780 -3.93551 3.33833 3.41705 3.45220 4.46697 4.55082 4.59939 4.66794 4.80778 5.03422 5.17339 5.20354 5.37043 5.42217 5.44533 5.45437 5.54105 5.60695 5.65169 5.72800 5.77017 5.77492 5.82982 5.84345 5.88317 5.93382 6.01999 6.04284 6.07451 6.18336 6.23426 6.28565 6.37182 6.39146 6.41110 6.43766 6.47275 6.58387 6.67516 6.73115 6.85810 6.87586 7.25855 7.30880 7.32317 7.54187 7.73841 7.83428 7.91207 8.07148 8.51944 9.12273 9.69206 11.17958 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.023170 B = 0.004085 C = 0.003842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.194166 B = 6853.122927 C = 7285.332917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.097 4.097 3 C -0.150 4.150 4 C -0.081 4.081 5 H 0.068 0.932 6 C -0.109 4.109 7 C -0.114 4.114 8 C -0.110 4.110 9 C -0.105 4.105 10 C 0.089 3.911 11 H 0.041 0.959 12 N -0.677 5.677 13 C 0.071 3.929 14 C -0.057 4.057 15 C -0.114 4.114 16 C -0.128 4.128 17 C 0.034 3.966 18 C -0.505 4.505 19 H 0.059 0.941 20 C 0.054 3.946 21 N -0.898 5.898 22 Si 0.886 3.114 23 H -0.273 1.273 24 H -0.286 1.286 25 H -0.286 1.286 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.072 0.928 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.050 0.950 37 H 0.080 0.920 38 H 0.047 0.953 39 H 0.060 0.940 40 H 0.052 0.948 41 H 0.337 0.663 42 H 0.064 0.936 43 H 0.019 0.981 44 H 0.042 0.958 45 H 0.052 0.948 46 H 0.038 0.962 47 H 0.039 0.961 48 H 0.063 0.937 49 H 0.032 0.968 50 H 0.011 0.989 51 H 0.014 0.986 52 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.018 0.295 10.266 20.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.116 4.116 3 C -0.208 4.208 4 C -0.099 4.099 5 H 0.087 0.913 6 C -0.146 4.146 7 C -0.151 4.151 8 C -0.148 4.148 9 C -0.143 4.143 10 C -0.021 4.021 11 H 0.059 0.941 12 N -0.311 5.311 13 C -0.058 4.058 14 C -0.057 4.057 15 C -0.172 4.172 16 C -0.185 4.185 17 C -0.004 4.004 18 C -0.543 4.543 19 H 0.077 0.923 20 C -0.146 4.146 21 N -0.538 5.538 22 Si 0.715 3.285 23 H -0.198 1.198 24 H -0.212 1.212 25 H -0.212 1.212 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.090 0.910 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.099 0.901 38 H 0.066 0.934 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.159 0.841 42 H 0.082 0.918 43 H 0.038 0.962 44 H 0.061 0.939 45 H 0.071 0.929 46 H 0.057 0.943 47 H 0.058 0.942 48 H 0.082 0.918 49 H 0.050 0.950 50 H 0.030 0.970 51 H 0.032 0.968 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -17.632 -0.167 10.592 20.570 hybrid contribution 0.397 0.601 -1.184 1.386 sum -17.235 0.435 9.408 19.641 Atomic orbital electron populations 1.21865 0.95323 1.01761 1.01363 1.21203 0.95721 0.96131 0.98540 1.21906 1.01434 0.95984 1.01437 1.21335 0.94847 0.96201 0.97555 0.91341 1.21543 0.99067 0.94952 0.99085 1.21469 0.96515 0.99594 0.97552 1.21388 0.94698 0.96742 1.01960 1.21487 1.00470 0.96213 0.96140 1.21515 0.93228 0.95356 0.92001 0.94084 1.60643 1.04218 1.59550 1.06695 1.22121 0.89373 0.95976 0.98317 1.20601 0.97839 0.95399 0.91884 1.21582 0.99465 0.95503 1.00612 1.21756 0.96833 1.00334 0.99575 1.19121 0.88977 0.95998 0.96292 1.21287 1.00455 1.21784 1.10778 0.92277 1.25015 0.97014 0.95397 0.97185 1.69983 1.09863 1.33490 1.40459 0.86624 0.78709 0.79739 0.83468 1.19782 1.21225 1.21181 0.92987 0.92983 0.92338 0.90980 0.92918 0.92384 0.92833 0.90917 0.92680 0.92681 0.93087 0.90094 0.93444 0.92122 0.92948 0.84069 0.91774 0.96245 0.93888 0.92892 0.94274 0.94221 0.91838 0.94951 0.97027 0.96767 0.93276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 8.84 37.16 0.33 -0.93 16 2 C -0.10 -0.97 2.27 -90.62 -0.21 -1.17 16 3 C -0.15 -1.53 8.84 37.16 0.33 -1.21 16 4 C -0.08 -0.83 1.55 -90.62 -0.14 -0.97 16 5 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 6 C -0.11 -1.10 4.69 -26.73 -0.13 -1.22 16 7 C -0.11 -1.15 5.92 -26.73 -0.16 -1.31 16 8 C -0.11 -1.27 5.77 -26.73 -0.15 -1.43 16 9 C -0.10 -1.26 5.53 -26.73 -0.15 -1.41 16 10 C 0.09 1.08 1.95 -67.71 -0.13 0.95 16 11 H 0.04 0.54 6.09 -51.93 -0.32 0.22 16 12 N -0.68 -9.39 4.04 -106.72 -0.43 -9.82 16 13 C 0.07 1.22 4.45 -3.82 -0.02 1.20 16 14 C -0.06 -1.13 0.60 -154.51 -0.09 -1.22 16 15 C -0.11 -2.21 8.06 37.16 0.30 -1.91 16 16 C -0.13 -2.37 7.89 37.16 0.29 -2.08 16 17 C 0.03 0.85 4.04 -27.88 -0.11 0.74 16 18 C -0.50 -13.87 7.65 -34.44 -0.26 -14.13 16 19 H 0.06 1.59 5.68 -52.48 -0.30 1.29 16 20 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 21 N -0.90 -27.02 13.29 55.43 0.74 -26.29 16 22 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 23 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.43 8.14 -51.92 -0.42 0.01 16 28 H 0.06 0.48 6.43 -51.93 -0.33 0.15 16 29 H 0.07 0.80 6.21 -51.93 -0.32 0.47 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.67 6.43 -51.93 -0.33 0.34 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.83 7.48 -51.93 -0.39 0.44 16 34 H 0.05 0.50 6.43 -51.93 -0.33 0.17 16 35 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.08 1.09 7.60 -51.93 -0.39 0.69 16 38 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.81 7.46 -51.93 -0.39 0.42 16 40 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.34 4.62 4.04 -39.29 -0.16 4.46 16 42 H 0.06 1.16 7.44 -51.93 -0.39 0.77 16 43 H 0.02 0.35 8.06 -51.93 -0.42 -0.07 16 44 H 0.04 0.74 7.60 -51.93 -0.39 0.35 16 45 H 0.05 1.10 6.61 -51.93 -0.34 0.76 16 46 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 47 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.06 1.29 6.62 -51.93 -0.34 0.94 16 49 H 0.03 0.51 6.57 -51.93 -0.34 0.17 16 50 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 51 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 52 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 372.59 15.07 5.61 5.61 Total: -1.00 -28.14 372.59 -9.62 -37.76 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -10.13 Total: 0.67 kcal Atomic # 6 Polarization: -24.24 SS G_CDS: -0.40 Total: -24.64 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: 0.31 Total: -36.10 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -28.14 -9.62 -37.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229700945.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.569 kcal (2) G-P(sol) polarization free energy of solvation -28.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds