Wall clock time and date at job start Tue Mar 31 2020 05:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46911 * 2 1 4 4 C 1.52996 * 109.47343 * 59.99742 * 3 2 1 5 5 C 1.53002 * 109.47454 * 299.99687 * 3 2 1 6 6 C 1.52997 * 109.47092 * 179.97438 * 3 2 1 7 7 C 1.53002 * 109.47415 * 180.02562 * 6 3 2 8 8 C 1.53000 * 109.47233 * 180.02562 * 7 6 3 9 9 C 1.52997 * 109.47060 * 299.99657 * 8 7 6 10 10 N 1.46894 * 109.47515 * 180.02562 * 9 8 7 11 11 C 1.46903 * 111.00270 * 154.99879 * 10 9 8 12 12 C 1.53002 * 109.46994 * 180.02562 * 11 10 9 13 13 C 1.53001 * 109.46780 * 180.02562 * 12 11 10 14 14 C 1.50699 * 109.46895 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00211 * 0.02562 * 14 13 12 16 16 C 1.37887 * 119.99831 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00007 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99741 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47529 * 59.99823 * 18 16 14 20 20 H 1.48504 * 109.47092 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47180 * 300.00003 * 18 16 14 22 22 C 1.52999 * 109.47317 * 59.99960 * 9 8 7 23 23 C 1.52997 * 109.47232 * 300.00075 * 6 3 2 24 24 H 1.09004 * 109.46724 * 60.00450 * 1 2 3 25 25 H 1.08992 * 109.47098 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.47585 * 300.00728 * 1 2 3 27 27 H 1.09002 * 109.47398 * 240.00028 * 2 1 3 28 28 H 1.08996 * 109.47325 * 119.99693 * 2 1 3 29 29 H 1.09001 * 109.47372 * 179.97438 * 4 3 2 30 30 H 1.08996 * 109.47261 * 300.00175 * 4 3 2 31 31 H 1.09004 * 109.47368 * 59.99791 * 4 3 2 32 32 H 1.09002 * 109.46838 * 300.00606 * 5 3 2 33 33 H 1.08996 * 109.46698 * 60.00102 * 5 3 2 34 34 H 1.09001 * 109.47142 * 180.02562 * 5 3 2 35 35 H 1.09002 * 109.47497 * 59.99850 * 6 3 2 36 36 H 1.08992 * 109.47063 * 59.99950 * 7 6 3 37 37 H 1.09004 * 109.46733 * 299.99664 * 7 6 3 38 38 H 1.09002 * 109.47398 * 59.99826 * 8 7 6 39 39 H 1.09001 * 109.47194 * 180.02562 * 8 7 6 40 40 H 1.09002 * 109.47153 * 300.00319 * 9 8 7 41 41 H 1.00907 * 110.99954 * 31.04955 * 10 9 8 42 42 H 1.09000 * 109.47021 * 300.00052 * 11 10 9 43 43 H 1.08998 * 109.47037 * 60.00492 * 11 10 9 44 44 H 1.09000 * 109.47032 * 299.99742 * 12 11 10 45 45 H 1.08998 * 109.47074 * 60.00211 * 12 11 10 46 46 H 1.09000 * 109.47036 * 299.99627 * 13 12 11 47 47 H 1.08998 * 109.47236 * 60.00198 * 13 12 11 48 48 H 0.96999 * 119.99663 * 179.97438 * 17 16 14 49 49 H 1.09000 * 109.47486 * 180.02562 * 22 9 8 50 50 H 1.09002 * 109.46716 * 60.00091 * 22 9 8 51 51 H 1.09002 * 109.47153 * 299.99992 * 23 6 3 52 52 H 1.09001 * 109.47289 * 60.00075 * 23 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5299 2.1638 1.2492 5 6 1.5300 2.1638 -1.2493 6 6 3.5699 1.4426 0.0006 7 6 4.0800 2.8851 0.0013 8 6 5.6100 2.8851 0.0013 9 6 6.1199 2.1634 1.2502 10 7 7.5889 2.1638 1.2506 11 6 8.1151 2.0438 2.6169 12 6 9.6445 2.0485 2.5767 13 6 10.1925 1.9228 3.9996 14 6 11.6990 1.9268 3.9599 15 1 12.2140 2.0111 3.0144 16 6 12.4197 1.8240 5.1309 17 7 11.7925 1.7220 6.2823 18 14 14.2871 1.8298 5.0817 19 1 14.7626 3.1005 4.4782 20 1 14.8190 1.7076 6.4629 21 1 14.7642 0.6850 4.2651 22 6 5.6100 0.7209 1.2497 23 6 4.0794 0.7215 1.2502 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8898 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.8936 3.1914 1.2494 30 1 0.4400 2.1638 1.2492 31 1 1.8932 1.6500 2.1392 32 1 1.8934 1.6499 -2.1392 33 1 0.4401 2.1638 -1.2493 34 1 1.8937 3.1914 -1.2494 35 1 3.9337 0.9286 -0.8891 36 1 3.7163 3.3986 0.8912 37 1 3.7170 3.3991 -0.8888 38 1 5.9734 2.3716 -0.8889 39 1 5.9733 3.9128 0.0022 40 1 5.7566 2.6768 2.1404 41 1 7.9504 2.9885 0.7952 42 1 7.7651 2.8843 3.2162 43 1 7.7658 1.1112 3.0601 44 1 9.9948 1.2082 1.9773 45 1 9.9934 2.9813 2.1336 46 1 9.8423 2.7629 4.5994 47 1 9.8436 0.9899 4.4423 48 1 12.2996 1.6493 7.1060 49 1 5.9729 0.2068 2.1397 50 1 5.9733 0.2074 0.3595 51 1 3.7157 1.2355 2.1399 52 1 3.7162 -0.3062 1.2502 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236840639.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:17 Heat of formation + Delta-G solvation = -57.465544 kcal Electronic energy + Delta-G solvation = -22736.352471 eV Core-core repulsion = 19733.285469 eV Total energy + Delta-G solvation = -3003.067003 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.12814 -37.40262 -34.96355 -33.17810 -31.47778 -31.09351 -30.04005 -27.99743 -27.58916 -25.86316 -24.48369 -22.65010 -22.46667 -21.24421 -20.24719 -19.60356 -18.35889 -16.25122 -16.03239 -15.45555 -15.11842 -14.88763 -14.59760 -14.33706 -14.31063 -14.09467 -13.71568 -13.41435 -12.98456 -12.62722 -12.55523 -12.38873 -12.18888 -12.01038 -11.92708 -11.75907 -11.60061 -11.51342 -11.25434 -11.08060 -11.05536 -10.81426 -10.71329 -10.63506 -10.53293 -10.45030 -10.34721 -10.03014 -9.84663 -9.63471 -9.26794 -9.01442 -8.30681 -8.07642 -5.95990 -3.97941 3.36158 3.39992 3.42976 4.27092 4.41224 4.48978 4.52915 4.58623 4.78128 4.84129 5.01031 5.11892 5.19367 5.21578 5.29732 5.34480 5.37655 5.39567 5.43972 5.48951 5.51583 5.54751 5.66780 5.70472 5.70909 5.75880 5.80280 5.81242 5.86208 5.92347 5.94644 5.97915 6.02241 6.07365 6.15570 6.21442 6.25122 6.31291 6.35423 6.41335 6.50872 6.78169 6.85951 7.19101 7.46144 7.71832 7.74217 7.88677 8.04764 8.48233 9.09131 9.65659 11.15473 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.042412 B = 0.002398 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.034499 B =11675.078882 C =11942.761356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.116 4.116 3 C -0.059 4.059 4 C -0.148 4.148 5 C -0.145 4.145 6 C -0.074 4.074 7 C -0.113 4.113 8 C -0.120 4.120 9 C 0.088 3.912 10 N -0.690 5.690 11 C 0.060 3.940 12 C -0.107 4.107 13 C 0.022 3.978 14 C -0.519 4.519 15 H 0.054 0.946 16 C 0.055 3.945 17 N -0.897 5.897 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 C -0.106 4.106 23 C -0.117 4.117 24 H 0.055 0.945 25 H 0.049 0.951 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.056 0.944 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.057 0.943 40 H 0.038 0.962 41 H 0.336 0.664 42 H 0.022 0.978 43 H 0.065 0.935 44 H 0.055 0.945 45 H 0.044 0.956 46 H 0.013 0.987 47 H 0.015 0.985 48 H 0.260 0.740 49 H 0.061 0.939 50 H 0.066 0.934 51 H 0.062 0.938 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.016 0.187 -14.335 27.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.153 4.153 3 C -0.059 4.059 4 C -0.205 4.205 5 C -0.202 4.202 6 C -0.093 4.093 7 C -0.151 4.151 8 C -0.158 4.158 9 C -0.022 4.022 10 N -0.320 5.320 11 C -0.068 4.068 12 C -0.145 4.145 13 C -0.015 4.015 14 C -0.557 4.557 15 H 0.073 0.927 16 C -0.146 4.146 17 N -0.537 5.537 18 Si 0.720 3.280 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.144 4.144 23 C -0.155 4.155 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.056 0.944 41 H 0.154 0.846 42 H 0.040 0.960 43 H 0.084 0.916 44 H 0.074 0.926 45 H 0.062 0.938 46 H 0.031 0.969 47 H 0.034 0.966 48 H 0.070 0.930 49 H 0.080 0.920 50 H 0.084 0.916 51 H 0.081 0.919 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -23.928 -0.502 -14.265 27.862 hybrid contribution 0.913 0.885 0.493 1.364 sum -23.015 0.384 -13.772 26.824 Atomic orbital electron populations 1.21896 0.96245 1.01271 1.01894 1.21630 0.95584 0.96030 1.02084 1.20549 0.94793 0.95113 0.95490 1.22037 1.00602 1.00407 0.97413 1.21976 1.00768 1.00355 0.97096 1.21168 0.93384 0.96067 0.98637 1.21656 0.94977 0.96587 1.01876 1.21715 0.95605 0.99880 0.98607 1.21497 0.88197 0.95944 0.96576 1.60578 1.06090 1.45691 1.19663 1.22148 0.97252 0.99936 0.87489 1.21620 0.91356 1.00558 1.00941 1.19059 0.95423 0.97016 0.90039 1.21232 0.91842 1.49910 0.92709 0.92735 1.25038 0.98513 0.95429 0.95599 1.69958 1.35471 1.50594 0.97632 0.86651 0.85793 0.78597 0.76915 1.20280 1.21330 1.20225 1.21523 0.94058 0.96378 1.02490 1.21719 0.95676 1.00268 0.97794 0.92645 0.93170 0.92514 0.92187 0.91610 0.92504 0.92788 0.92321 0.92874 0.92662 0.92478 0.91292 0.91823 0.91845 0.91282 0.92379 0.94380 0.84603 0.95987 0.91606 0.92624 0.93752 0.96880 0.96625 0.93009 0.92048 0.91551 0.91914 0.91825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.01 9.21 37.16 0.34 -0.67 16 2 C -0.12 -0.84 4.64 -26.73 -0.12 -0.96 16 3 C -0.06 -0.44 0.35 -154.51 -0.05 -0.49 16 4 C -0.15 -1.10 7.41 37.16 0.28 -0.82 16 5 C -0.14 -0.99 7.77 37.16 0.29 -0.70 16 6 C -0.07 -0.63 1.55 -90.62 -0.14 -0.77 16 7 C -0.11 -0.99 4.50 -26.73 -0.12 -1.11 16 8 C -0.12 -1.25 5.19 -26.73 -0.14 -1.39 16 9 C 0.09 1.11 2.49 -67.72 -0.17 0.94 16 10 N -0.69 -10.43 6.31 -106.73 -0.67 -11.10 16 11 C 0.06 1.09 5.48 -3.82 -0.02 1.07 16 12 C -0.11 -2.29 5.41 -26.73 -0.14 -2.43 16 13 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 14 C -0.52 -15.10 9.11 -34.44 -0.31 -15.41 16 15 H 0.05 1.54 7.74 -52.49 -0.41 1.14 16 16 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -27.52 13.29 55.43 0.74 -26.78 16 18 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 C -0.11 -1.28 5.43 -26.71 -0.14 -1.43 16 23 C -0.12 -1.13 4.50 -26.71 -0.12 -1.25 16 24 H 0.05 0.34 6.43 -51.93 -0.33 0.01 16 25 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 26 H 0.06 0.36 6.43 -51.93 -0.33 0.03 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.50 6.43 -51.93 -0.33 0.17 16 29 H 0.06 0.43 6.43 -51.93 -0.33 0.10 16 30 H 0.05 0.37 6.43 -51.93 -0.33 0.04 16 31 H 0.06 0.46 6.43 -51.93 -0.33 0.13 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.05 0.35 6.43 -51.93 -0.33 0.02 16 34 H 0.06 0.39 6.43 -51.93 -0.33 0.06 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.58 6.43 -51.93 -0.33 0.24 16 37 H 0.06 0.51 6.43 -51.93 -0.33 0.17 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.59 8.12 -51.93 -0.42 0.17 16 40 H 0.04 0.52 7.80 -51.93 -0.40 0.11 16 41 H 0.34 4.79 8.35 -39.29 -0.33 4.46 16 42 H 0.02 0.40 8.05 -51.93 -0.42 -0.02 16 43 H 0.07 1.22 7.44 -51.93 -0.39 0.84 16 44 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 45 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 46 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 48 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 49 H 0.06 0.83 7.46 -51.93 -0.39 0.44 16 50 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 51 H 0.06 0.62 6.43 -51.93 -0.33 0.29 16 52 H 0.06 0.58 6.43 -51.93 -0.33 0.25 16 LS Contribution 375.75 15.07 5.66 5.66 Total: -1.00 -29.78 375.75 -10.24 -40.01 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -10.12 Total: -1.40 kcal Atomic # 6 Polarization: -22.64 SS G_CDS: -0.82 Total: -23.46 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: 0.06 Total: -37.88 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -29.78 -10.24 -40.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236840639.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.451 kcal (2) G-P(sol) polarization free energy of solvation -29.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds