Wall clock time and date at job start Tue Mar 31 2020 05:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.47212 * 2 1 4 4 C 1.52997 * 109.47269 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47131 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47131 * 179.97438 * 5 4 3 7 7 C 1.53006 * 109.47127 * 180.02562 * 6 5 4 8 8 C 1.52997 * 109.47127 * 180.02562 * 7 6 5 9 9 C 1.52996 * 109.47131 * 179.97438 * 8 7 6 10 10 N 1.46896 * 109.47438 * 179.97438 * 9 8 7 11 11 C 1.46843 * 111.00258 * 294.21859 * 10 9 8 12 12 C 1.53035 * 109.52488 * 174.15905 * 11 10 9 13 13 C 1.53115 * 109.28198 * 59.17597 * 12 11 10 14 14 C 1.50699 * 109.57805 * 182.41122 * 13 12 11 15 15 H 1.07994 * 120.00243 * 119.70971 * 14 13 12 16 16 C 1.37882 * 119.99826 * 299.71191 * 14 13 12 17 17 N 1.31508 * 119.99900 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00035 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46772 * 60.00110 * 18 16 14 20 20 H 1.48495 * 109.47096 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46950 * 300.00332 * 18 16 14 22 22 C 1.53117 * 109.15892 * 302.34661 * 13 12 11 23 23 C 1.46841 * 111.00407 * 170.00191 * 10 9 8 24 24 H 1.08996 * 109.46698 * 60.00429 * 1 2 3 25 25 H 1.09002 * 109.47097 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47142 * 300.00375 * 1 2 3 27 27 H 1.08992 * 109.47513 * 239.99180 * 2 1 3 28 28 H 1.09004 * 109.47006 * 119.99571 * 2 1 3 29 29 H 1.08998 * 109.46876 * 59.99211 * 3 2 1 30 30 H 1.09001 * 109.46289 * 299.99699 * 3 2 1 31 31 H 1.09001 * 109.46832 * 59.99780 * 4 3 2 32 32 H 1.08992 * 109.47303 * 300.00077 * 4 3 2 33 33 H 1.09001 * 109.46993 * 59.99869 * 5 4 3 34 34 H 1.09004 * 109.47298 * 300.00283 * 5 4 3 35 35 H 1.09001 * 109.46832 * 60.00325 * 6 5 4 36 36 H 1.08993 * 109.47194 * 299.99846 * 6 5 4 37 37 H 1.09001 * 109.46801 * 300.00272 * 7 6 5 38 38 H 1.09001 * 109.46998 * 59.99868 * 7 6 5 39 39 H 1.08996 * 109.46952 * 300.00302 * 8 7 6 40 40 H 1.09001 * 109.46832 * 60.00321 * 8 7 6 41 41 H 1.09000 * 109.47380 * 300.00763 * 9 8 7 42 42 H 1.09001 * 109.46997 * 60.00426 * 9 8 7 43 43 H 1.09007 * 109.45803 * 294.17042 * 11 10 9 44 44 H 1.09003 * 109.46921 * 54.13491 * 11 10 9 45 45 H 1.08997 * 109.50241 * 299.23141 * 12 11 10 46 46 H 1.09004 * 109.50497 * 179.11966 * 12 11 10 47 47 H 1.08999 * 109.52640 * 62.25021 * 13 12 11 48 48 H 0.97002 * 120.00209 * 179.97438 * 17 16 14 49 49 H 1.09005 * 109.50645 * 297.71420 * 22 13 12 50 50 H 1.09001 * 109.50417 * 177.59487 * 22 13 12 51 51 H 1.09002 * 109.46006 * 305.85836 * 23 10 9 52 52 H 1.08998 * 109.46599 * 65.83290 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0800 2.8850 0.0000 6 6 5.6100 2.8850 0.0013 7 6 6.1200 4.3276 0.0013 8 6 7.6500 4.3276 0.0019 9 6 8.1599 5.7701 0.0013 10 7 9.6289 5.7702 0.0025 11 6 10.1542 5.2088 1.2536 12 6 11.6771 5.0900 1.1612 13 6 12.2780 6.4758 0.9099 14 6 13.7728 6.3582 0.7588 15 1 14.2487 6.6676 -0.1599 16 6 14.5328 5.8554 1.7935 17 7 13.9532 5.4780 2.9121 18 14 16.3856 5.7089 1.6061 19 1 16.9654 7.0529 1.3551 20 1 16.9658 5.1434 2.8505 21 1 16.6982 4.8136 0.4633 22 6 11.6784 7.0583 -0.3729 23 6 10.1554 7.1201 -0.2360 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5139 -0.8898 28 1 1.8933 -0.5138 0.8901 29 1 1.6766 1.9564 0.8899 30 1 1.6767 1.9562 -0.8901 31 1 3.9337 0.9286 -0.8891 32 1 3.9330 0.9289 0.8908 33 1 3.7163 3.3994 0.8895 34 1 3.7170 3.3984 -0.8904 35 1 5.9740 2.3706 -0.8881 36 1 5.9726 2.3719 0.8919 37 1 5.7573 4.8411 -0.8892 38 1 5.7559 4.8417 0.8908 39 1 8.0129 3.8139 0.8921 40 1 8.0136 3.8137 -0.8879 41 1 7.7969 6.2835 -0.8891 42 1 7.7963 6.2844 0.8909 43 1 9.8907 5.8636 2.0843 44 1 9.7222 4.2217 1.4185 45 1 11.9410 4.4244 0.3394 46 1 12.0682 4.6879 2.0959 47 1 12.0472 7.1308 1.7500 48 1 14.4878 5.1240 3.6399 49 1 11.9422 6.4237 -1.2190 50 1 12.0702 8.0626 -0.5344 51 1 9.7242 7.5211 -1.1533 52 1 9.8920 7.7659 0.6016 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397222274.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:49 Heat of formation + Delta-G solvation = -61.249051 kcal Electronic energy + Delta-G solvation = -21756.937080 eV Core-core repulsion = 18753.706012 eV Total energy + Delta-G solvation = -3003.231068 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -38.37826 -37.15160 -35.47284 -33.94246 -32.39556 -30.95249 -29.73656 -28.77149 -26.28242 -24.81894 -22.89002 -22.18695 -21.56134 -21.28612 -20.82921 -20.24458 -18.52816 -16.39612 -16.33789 -15.54842 -15.22100 -14.58596 -14.47662 -14.39397 -13.99985 -13.77135 -13.62056 -13.12104 -12.92967 -12.68092 -12.59586 -12.33896 -12.23845 -11.97758 -11.70964 -11.56828 -11.32272 -11.25490 -11.17811 -10.94350 -10.89287 -10.86627 -10.71628 -10.64069 -10.54200 -10.36535 -10.15806 -10.12855 -9.91233 -9.35152 -8.90284 -8.64323 -8.24738 -7.66702 -5.92946 -3.98201 3.35565 3.39842 3.42843 4.28200 4.48240 4.52429 4.56702 4.72644 4.80818 4.92830 5.02160 5.04153 5.23477 5.27825 5.35398 5.37232 5.42694 5.48295 5.53627 5.61837 5.66137 5.70081 5.74616 5.78071 5.79573 5.89403 5.92425 5.94919 5.98356 5.99694 6.05526 6.11862 6.19532 6.21138 6.28419 6.38433 6.40773 6.48605 6.69094 6.71103 6.91517 7.14181 7.23245 7.50409 7.68740 7.78485 7.89708 8.10535 8.21327 8.53241 9.05298 9.65801 11.13203 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.034551 B = 0.002077 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.200557 B =13478.265841 C =14037.505014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.121 4.121 5 C -0.120 4.120 6 C -0.119 4.119 7 C -0.117 4.117 8 C -0.116 4.116 9 C 0.055 3.945 10 N -0.537 5.537 11 C 0.056 3.944 12 C -0.104 4.104 13 C 0.048 3.952 14 C -0.510 4.510 15 H 0.053 0.947 16 C 0.060 3.940 17 N -0.893 5.893 18 Si 0.890 3.110 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.278 1.278 22 C -0.106 4.106 23 C 0.061 3.939 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.063 0.937 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.024 0.976 43 H 0.020 0.980 44 H 0.057 0.943 45 H 0.042 0.958 46 H 0.091 0.909 47 H 0.019 0.981 48 H 0.259 0.741 49 H 0.056 0.944 50 H 0.048 0.952 51 H 0.056 0.944 52 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.108 -6.779 -5.144 24.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.158 4.158 4 C -0.159 4.159 5 C -0.157 4.157 6 C -0.157 4.157 7 C -0.155 4.155 8 C -0.154 4.154 9 C -0.073 4.073 10 N -0.262 5.262 11 C -0.071 4.071 12 C -0.142 4.142 13 C 0.029 3.971 14 C -0.549 4.549 15 H 0.072 0.928 16 C -0.140 4.140 17 N -0.532 5.532 18 Si 0.718 3.282 19 H -0.204 1.204 20 H -0.214 1.214 21 H -0.203 1.203 22 C -0.144 4.144 23 C -0.067 4.067 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.042 0.958 43 H 0.038 0.962 44 H 0.076 0.924 45 H 0.061 0.939 46 H 0.109 0.891 47 H 0.038 0.962 48 H 0.069 0.931 49 H 0.075 0.925 50 H 0.067 0.933 51 H 0.074 0.926 52 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -22.894 -7.146 -5.343 24.571 hybrid contribution 0.721 0.439 0.662 1.073 sum -22.172 -6.707 -4.681 23.633 Atomic orbital electron populations 1.21783 0.96039 1.01496 1.01748 1.21552 0.95731 0.97131 1.01992 1.21637 0.95686 0.96570 1.01945 1.21625 0.95072 0.97130 1.02071 1.21611 0.95771 0.96478 1.01857 1.21597 0.94860 0.97088 1.02147 1.21562 0.95804 0.96497 1.01658 1.21605 0.94051 0.96941 1.02791 1.22067 0.88997 0.96521 0.99717 1.61992 1.05449 1.22360 1.36431 1.22307 0.98958 0.97546 0.88326 1.21655 0.89277 1.00373 1.02932 1.18678 0.94296 0.92553 0.91568 1.21184 0.91856 1.41605 1.00214 0.92827 1.24968 0.98274 0.95474 0.95302 1.69869 1.35184 1.43456 1.04666 0.86696 0.85926 0.78311 0.77264 1.20390 1.21396 1.20324 1.21679 0.91562 0.99940 1.01244 1.22099 0.97682 0.88364 0.98558 0.92817 0.92886 0.92810 0.92101 0.92088 0.92126 0.92134 0.92069 0.92047 0.92191 0.92181 0.92001 0.92044 0.92249 0.92369 0.91832 0.91319 0.91738 0.95826 0.96210 0.92430 0.93894 0.89056 0.96242 0.93092 0.92521 0.93281 0.92598 0.96002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.91 37.16 0.37 -0.51 16 2 C -0.13 -0.80 5.93 -26.73 -0.16 -0.96 16 3 C -0.12 -0.82 5.21 -26.73 -0.14 -0.96 16 4 C -0.12 -0.91 5.21 -26.73 -0.14 -1.05 16 5 C -0.12 -0.97 5.21 -26.73 -0.14 -1.11 16 6 C -0.12 -1.12 5.21 -26.73 -0.14 -1.25 16 7 C -0.12 -1.22 5.21 -26.73 -0.14 -1.36 16 8 C -0.12 -1.51 5.14 -26.73 -0.14 -1.65 16 9 C 0.06 0.82 4.96 -3.83 -0.02 0.81 16 10 N -0.54 -9.95 4.66 -234.68 -1.09 -11.05 16 11 C 0.06 1.13 5.29 -3.84 -0.02 1.11 16 12 C -0.10 -2.52 5.12 -26.65 -0.14 -2.66 16 13 C 0.05 1.21 2.16 -91.65 -0.20 1.02 16 14 C -0.51 -14.28 8.57 -34.44 -0.29 -14.58 16 15 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 16 C 0.06 1.70 5.31 -17.82 -0.09 1.60 16 17 N -0.89 -25.76 11.37 55.43 0.63 -25.13 16 18 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 C -0.11 -2.31 5.32 -26.65 -0.14 -2.45 16 23 C 0.06 1.14 5.46 -3.84 -0.02 1.12 16 24 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 26 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.88 6.43 -51.93 -0.33 0.55 16 40 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.06 0.89 7.99 -51.93 -0.41 0.47 16 42 H 0.02 0.35 8.12 -51.93 -0.42 -0.07 16 43 H 0.02 0.41 8.14 -51.92 -0.42 -0.01 16 44 H 0.06 1.08 6.21 -51.93 -0.32 0.75 16 45 H 0.04 1.07 8.14 -51.93 -0.42 0.64 16 46 H 0.09 2.44 6.17 -51.93 -0.32 2.12 16 47 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 49 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 50 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 51 H 0.06 0.93 8.02 -51.93 -0.42 0.51 16 52 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 394.25 15.07 5.94 5.94 Total: -1.00 -28.14 394.25 -12.17 -40.31 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -11.07 Total: -3.75 kcal Atomic # 6 Polarization: -21.32 SS G_CDS: -1.55 Total: -22.87 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: -0.46 Total: -36.18 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -28.14 -12.17 -40.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397222274.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.939 kcal (2) G-P(sol) polarization free energy of solvation -28.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds