Wall clock time and date at job start Tue Mar 31 2020 05:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47213 * 2 1 4 4 C 1.52993 * 109.46957 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47153 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.47409 * 180.02562 * 5 4 3 7 7 C 1.52998 * 109.47409 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.47409 * 180.02562 * 7 6 5 9 9 C 1.52998 * 109.47409 * 180.02562 * 8 7 6 10 10 N 1.46897 * 109.47268 * 180.02562 * 9 8 7 11 11 C 1.46854 * 110.99665 * 293.95495 * 10 9 8 12 12 C 1.53037 * 109.51886 * 185.84309 * 11 10 9 13 13 C 1.53126 * 109.27801 * 300.81620 * 12 11 10 14 14 C 1.53124 * 109.15878 * 57.65645 * 13 12 11 15 15 H 1.08999 * 109.50059 * 62.28737 * 14 13 12 16 16 C 1.50696 * 109.50007 * 182.40592 * 14 13 12 17 17 H 1.07997 * 120.00077 * 120.00524 * 16 14 13 18 18 C 1.37872 * 120.00039 * 299.99707 * 16 14 13 19 19 N 1.31516 * 120.00300 * 0.02562 * 18 16 14 20 20 Si 1.86803 * 120.00131 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46701 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47104 * 120.00167 * 20 18 16 23 23 H 1.48494 * 109.47395 * 240.00479 * 20 18 16 24 24 C 1.46844 * 111.00090 * 58.16171 * 10 9 8 25 25 H 1.08999 * 109.47199 * 300.00557 * 1 2 3 26 26 H 1.09004 * 109.46972 * 60.00127 * 1 2 3 27 27 H 1.08997 * 109.47269 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47199 * 239.99442 * 2 1 3 29 29 H 1.09004 * 109.46972 * 119.99872 * 2 1 3 30 30 H 1.08998 * 109.47006 * 59.99415 * 3 2 1 31 31 H 1.09006 * 109.46345 * 299.99588 * 3 2 1 32 32 H 1.09009 * 109.47342 * 59.99524 * 4 3 2 33 33 H 1.09004 * 109.47115 * 299.99804 * 4 3 2 34 34 H 1.08999 * 109.47139 * 59.99739 * 5 4 3 35 35 H 1.09004 * 109.47207 * 300.00062 * 5 4 3 36 36 H 1.08999 * 109.47199 * 59.99757 * 6 5 4 37 37 H 1.09004 * 109.46972 * 300.00187 * 6 5 4 38 38 H 1.08999 * 109.47139 * 59.99720 * 7 6 5 39 39 H 1.09004 * 109.47207 * 300.00043 * 7 6 5 40 40 H 1.08999 * 109.47199 * 59.99757 * 8 7 6 41 41 H 1.09004 * 109.46972 * 300.00187 * 8 7 6 42 42 H 1.08998 * 109.46651 * 59.99512 * 9 8 7 43 43 H 1.09003 * 109.46734 * 300.00278 * 9 8 7 44 44 H 1.08994 * 109.46310 * 65.82535 * 11 10 9 45 45 H 1.09004 * 109.45281 * 305.84691 * 11 10 9 46 46 H 1.09000 * 109.50480 * 180.88135 * 12 11 10 47 47 H 1.09002 * 109.53848 * 60.77851 * 12 11 10 48 48 H 1.08998 * 109.52297 * 177.56592 * 13 12 11 49 49 H 1.08999 * 109.51925 * 297.75795 * 13 12 11 50 50 H 0.97000 * 120.00526 * 179.97438 * 19 18 16 51 51 H 1.09002 * 109.46133 * 294.17882 * 24 10 9 52 52 H 1.09002 * 109.46165 * 54.15521 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0800 2.8849 0.0000 6 6 5.6100 2.8849 0.0000 7 6 6.1201 4.3273 -0.0013 8 6 7.6501 4.3273 -0.0019 9 6 8.1602 5.7698 -0.0026 10 7 9.6292 5.7698 -0.0038 11 6 10.1564 5.2133 1.2488 12 6 11.6793 5.3624 1.2735 13 6 12.2790 4.6247 0.0731 14 6 11.6772 5.1904 -1.2163 15 1 11.9404 6.2441 -1.3089 16 6 12.2179 4.4300 -2.3997 17 1 11.5428 3.8996 -3.0550 18 6 13.5743 4.4114 -2.6459 19 7 14.3965 5.0569 -1.8478 20 14 14.2445 3.4694 -4.1132 21 1 13.1214 2.8344 -4.8486 22 1 14.9611 4.4050 -5.0168 23 1 15.1835 2.4204 -3.6411 24 6 10.1544 5.0464 -1.1688 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9563 0.8899 31 1 1.6767 1.9562 -0.8901 32 1 3.9337 0.9283 -0.8891 33 1 3.9329 0.9287 0.8909 34 1 3.7163 3.3993 0.8895 35 1 3.7171 3.3982 -0.8905 36 1 5.9734 2.3706 -0.8897 37 1 5.9734 2.3714 0.8902 38 1 5.7568 4.8420 0.8882 39 1 5.7568 4.8404 -0.8918 40 1 8.0131 3.8128 -0.8917 41 1 8.0138 3.8141 0.8883 42 1 7.7971 6.2839 0.8874 43 1 7.7964 6.2833 -0.8926 44 1 9.8936 4.1576 1.3161 45 1 9.7252 5.7496 2.0941 46 1 12.0719 4.9352 2.1962 47 1 11.9431 6.4187 1.2203 48 1 13.3599 4.7644 0.0626 49 1 12.0488 3.5618 0.1467 50 1 15.3508 5.0436 -2.0208 51 1 9.8916 3.9915 -1.0900 52 1 9.7220 5.4614 -2.0792 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397657225.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:13 Heat of formation + Delta-G solvation = -60.412576 kcal Electronic energy + Delta-G solvation = -22103.909677 eV Core-core repulsion = 19100.714882 eV Total energy + Delta-G solvation = -3003.194795 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -38.58014 -37.10006 -35.37459 -33.84460 -32.39574 -31.09623 -29.81843 -28.51698 -25.71486 -24.90467 -23.67268 -21.96031 -21.44153 -21.26736 -20.85778 -20.54447 -18.20838 -16.37480 -16.34504 -15.50545 -15.01661 -14.58568 -14.41112 -14.24706 -14.02829 -13.94954 -13.54323 -13.19372 -13.04406 -12.61712 -12.56123 -12.34904 -12.15506 -11.83656 -11.72615 -11.55544 -11.43988 -11.23309 -11.16306 -10.97100 -10.92629 -10.87700 -10.77719 -10.63051 -10.57934 -10.37759 -10.26478 -9.95639 -9.76224 -9.41583 -8.97742 -8.65000 -8.26946 -7.51507 -5.94077 -4.00033 3.31585 3.39563 3.43286 4.35439 4.44178 4.58524 4.68111 4.74727 4.82760 4.89017 5.04266 5.05243 5.27380 5.27984 5.35553 5.35989 5.44412 5.49912 5.56196 5.64246 5.67520 5.70259 5.75239 5.77835 5.84577 5.88375 5.93763 5.95764 5.99092 6.01602 6.09468 6.11426 6.15709 6.26209 6.29313 6.44381 6.46085 6.54434 6.59367 6.78550 6.82307 7.03916 7.27249 7.46031 7.74375 7.79897 7.91082 8.13599 8.22253 8.52778 9.04423 9.64048 11.11872 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.019493 B = 0.002529 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.103806 B =11069.607591 C =12077.442863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.120 4.120 4 C -0.122 4.122 5 C -0.119 4.119 6 C -0.120 4.120 7 C -0.113 4.113 8 C -0.160 4.160 9 C 0.056 3.944 10 N -0.539 5.539 11 C 0.062 3.938 12 C -0.119 4.119 13 C -0.110 4.110 14 C 0.052 3.948 15 H 0.033 0.967 16 C -0.512 4.512 17 H 0.053 0.947 18 C 0.062 3.938 19 N -0.888 5.888 20 Si 0.889 3.111 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.285 1.285 24 C 0.067 3.933 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.067 0.933 41 H 0.059 0.941 42 H 0.063 0.937 43 H 0.068 0.932 44 H 0.025 0.975 45 H 0.055 0.945 46 H 0.045 0.955 47 H 0.059 0.941 48 H 0.090 0.910 49 H 0.028 0.972 50 H 0.258 0.742 51 H 0.022 0.978 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.844 -5.300 6.235 23.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.158 4.158 4 C -0.159 4.159 5 C -0.157 4.157 6 C -0.158 4.158 7 C -0.151 4.151 8 C -0.199 4.199 9 C -0.072 4.072 10 N -0.261 5.261 11 C -0.066 4.066 12 C -0.156 4.156 13 C -0.148 4.148 14 C 0.034 3.966 15 H 0.051 0.949 16 C -0.551 4.551 17 H 0.071 0.929 18 C -0.139 4.139 19 N -0.527 5.527 20 Si 0.717 3.283 21 H -0.199 1.199 22 H -0.211 1.211 23 H -0.211 1.211 24 C -0.060 4.060 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.086 0.914 44 H 0.043 0.957 45 H 0.073 0.927 46 H 0.063 0.937 47 H 0.078 0.922 48 H 0.108 0.892 49 H 0.047 0.953 50 H 0.068 0.932 51 H 0.041 0.959 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -21.479 -4.763 6.219 22.863 hybrid contribution 0.148 -1.432 -0.709 1.605 sum -21.331 -6.195 5.511 22.885 Atomic orbital electron populations 1.21783 0.96033 1.01493 1.01748 1.21553 0.95733 0.97142 1.01996 1.21633 0.95666 0.96562 1.01939 1.21629 0.95079 0.97154 1.02056 1.21608 0.95746 0.96457 1.01842 1.21618 0.94881 0.97279 1.02028 1.21513 0.95623 0.96350 1.01642 1.22298 0.95290 0.99797 1.02483 1.22184 0.88787 0.94647 1.01619 1.62220 1.05214 1.55319 1.03382 1.22020 0.96661 0.96494 0.91419 1.21690 0.93461 1.01399 0.99094 1.21641 1.03263 0.96449 0.93423 1.18686 0.87479 0.97340 0.93127 0.94883 1.21192 0.92026 1.31458 1.10425 0.92851 1.24943 0.97109 0.95528 0.96363 1.69904 1.03006 1.42548 1.37279 0.86585 0.78959 0.79766 0.82961 1.19881 1.21063 1.21126 1.22302 0.99069 0.94232 0.90429 0.92828 0.92793 0.92887 0.92075 0.92121 0.92152 0.92099 0.92045 0.92123 0.92223 0.92134 0.92063 0.92255 0.92369 0.92159 0.91422 0.92189 0.91831 0.91352 0.95723 0.92681 0.93672 0.92174 0.89165 0.95276 0.93164 0.95945 0.92519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.91 37.16 0.37 -0.56 16 2 C -0.13 -0.86 5.93 -26.73 -0.16 -1.02 16 3 C -0.12 -0.87 5.21 -26.73 -0.14 -1.01 16 4 C -0.12 -0.98 5.21 -26.74 -0.14 -1.12 16 5 C -0.12 -1.04 5.21 -26.73 -0.14 -1.17 16 6 C -0.12 -1.23 5.21 -26.73 -0.14 -1.37 16 7 C -0.11 -1.25 5.21 -26.73 -0.14 -1.39 16 8 C -0.16 -2.20 4.52 -26.73 -0.12 -2.32 16 9 C 0.06 0.85 5.36 -3.83 -0.02 0.83 16 10 N -0.54 -10.20 4.86 -234.67 -1.14 -11.34 16 11 C 0.06 1.12 5.05 -3.83 -0.02 1.10 16 12 C -0.12 -2.38 6.09 -26.65 -0.16 -2.55 16 13 C -0.11 -2.65 5.02 -26.60 -0.13 -2.78 16 14 C 0.05 1.34 2.26 -91.69 -0.21 1.13 16 15 H 0.03 0.94 8.14 -51.93 -0.42 0.51 16 16 C -0.51 -14.23 8.56 -34.44 -0.29 -14.53 16 17 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 18 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 19 N -0.89 -25.64 11.35 55.43 0.63 -25.01 16 20 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 21 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 C 0.07 1.44 4.06 -3.84 -0.02 1.42 16 25 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.07 1.05 6.50 -51.93 -0.34 0.71 16 41 H 0.06 0.86 6.68 -51.93 -0.35 0.51 16 42 H 0.06 0.88 8.06 -51.93 -0.42 0.46 16 43 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 44 H 0.02 0.44 6.75 -51.93 -0.35 0.09 16 45 H 0.05 0.88 8.06 -51.93 -0.42 0.46 16 46 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 48 H 0.09 2.43 6.15 -51.93 -0.32 2.11 16 49 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 50 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 51 H 0.02 0.49 6.61 -51.93 -0.34 0.14 16 52 H 0.06 1.22 8.12 -51.93 -0.42 0.80 16 LS Contribution 391.05 15.07 5.89 5.89 Total: -1.00 -27.98 391.05 -12.15 -40.13 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -10.95 Total: -2.44 kcal Atomic # 6 Polarization: -22.14 SS G_CDS: -1.56 Total: -23.70 kcal Atomic # 7 Polarization: -35.83 SS G_CDS: -0.51 Total: -36.34 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -27.98 -12.15 -40.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397657225.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.280 kcal (2) G-P(sol) polarization free energy of solvation -27.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds