Wall clock time and date at job start Tue Mar 31 2020 05:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47213 * 2 1 4 4 C 1.52993 * 109.46957 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47153 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.47409 * 180.02562 * 5 4 3 7 7 C 1.52998 * 109.47409 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.47409 * 180.02562 * 7 6 5 9 9 C 1.52998 * 109.47409 * 180.02562 * 8 7 6 10 10 N 1.46897 * 109.47268 * 180.02562 * 9 8 7 11 11 C 1.46854 * 110.99665 * 293.95495 * 10 9 8 12 12 C 1.53037 * 109.51886 * 185.84309 * 11 10 9 13 13 C 1.53126 * 109.27801 * 300.81620 * 12 11 10 14 14 C 1.53124 * 109.15878 * 57.65645 * 13 12 11 15 15 H 1.08999 * 109.50059 * 62.28737 * 14 13 12 16 16 C 1.50696 * 109.50007 * 182.40592 * 14 13 12 17 17 H 1.07997 * 120.00077 * 120.00524 * 16 14 13 18 18 C 1.37872 * 120.00039 * 299.99707 * 16 14 13 19 19 N 1.31516 * 120.00300 * 0.02562 * 18 16 14 20 20 Si 1.86803 * 120.00131 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46701 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47104 * 120.00167 * 20 18 16 23 23 H 1.48494 * 109.47395 * 240.00479 * 20 18 16 24 24 C 1.46844 * 111.00090 * 58.16171 * 10 9 8 25 25 H 1.08999 * 109.47199 * 300.00557 * 1 2 3 26 26 H 1.09004 * 109.46972 * 60.00127 * 1 2 3 27 27 H 1.08997 * 109.47269 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47199 * 239.99442 * 2 1 3 29 29 H 1.09004 * 109.46972 * 119.99872 * 2 1 3 30 30 H 1.08998 * 109.47006 * 59.99415 * 3 2 1 31 31 H 1.09006 * 109.46345 * 299.99588 * 3 2 1 32 32 H 1.09009 * 109.47342 * 59.99524 * 4 3 2 33 33 H 1.09004 * 109.47115 * 299.99804 * 4 3 2 34 34 H 1.08999 * 109.47139 * 59.99739 * 5 4 3 35 35 H 1.09004 * 109.47207 * 300.00062 * 5 4 3 36 36 H 1.08999 * 109.47199 * 59.99757 * 6 5 4 37 37 H 1.09004 * 109.46972 * 300.00187 * 6 5 4 38 38 H 1.08999 * 109.47139 * 59.99720 * 7 6 5 39 39 H 1.09004 * 109.47207 * 300.00043 * 7 6 5 40 40 H 1.08999 * 109.47199 * 59.99757 * 8 7 6 41 41 H 1.09004 * 109.46972 * 300.00187 * 8 7 6 42 42 H 1.08998 * 109.46651 * 59.99512 * 9 8 7 43 43 H 1.09003 * 109.46734 * 300.00278 * 9 8 7 44 44 H 1.08994 * 109.46310 * 65.82535 * 11 10 9 45 45 H 1.09004 * 109.45281 * 305.84691 * 11 10 9 46 46 H 1.09000 * 109.50480 * 180.88135 * 12 11 10 47 47 H 1.09002 * 109.53848 * 60.77851 * 12 11 10 48 48 H 1.08998 * 109.52297 * 177.56592 * 13 12 11 49 49 H 1.08999 * 109.51925 * 297.75795 * 13 12 11 50 50 H 0.97000 * 120.00526 * 179.97438 * 19 18 16 51 51 H 1.09002 * 109.46133 * 294.17882 * 24 10 9 52 52 H 1.09002 * 109.46165 * 54.15521 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0800 2.8849 0.0000 6 6 5.6100 2.8849 0.0000 7 6 6.1201 4.3273 -0.0013 8 6 7.6501 4.3273 -0.0019 9 6 8.1602 5.7698 -0.0026 10 7 9.6292 5.7698 -0.0038 11 6 10.1564 5.2133 1.2488 12 6 11.6793 5.3624 1.2735 13 6 12.2790 4.6247 0.0731 14 6 11.6772 5.1904 -1.2163 15 1 11.9404 6.2441 -1.3089 16 6 12.2179 4.4300 -2.3997 17 1 11.5428 3.8996 -3.0550 18 6 13.5743 4.4114 -2.6459 19 7 14.3965 5.0569 -1.8478 20 14 14.2445 3.4694 -4.1132 21 1 13.1214 2.8344 -4.8486 22 1 14.9611 4.4050 -5.0168 23 1 15.1835 2.4204 -3.6411 24 6 10.1544 5.0464 -1.1688 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9563 0.8899 31 1 1.6767 1.9562 -0.8901 32 1 3.9337 0.9283 -0.8891 33 1 3.9329 0.9287 0.8909 34 1 3.7163 3.3993 0.8895 35 1 3.7171 3.3982 -0.8905 36 1 5.9734 2.3706 -0.8897 37 1 5.9734 2.3714 0.8902 38 1 5.7568 4.8420 0.8882 39 1 5.7568 4.8404 -0.8918 40 1 8.0131 3.8128 -0.8917 41 1 8.0138 3.8141 0.8883 42 1 7.7971 6.2839 0.8874 43 1 7.7964 6.2833 -0.8926 44 1 9.8936 4.1576 1.3161 45 1 9.7252 5.7496 2.0941 46 1 12.0719 4.9352 2.1962 47 1 11.9431 6.4187 1.2203 48 1 13.3599 4.7644 0.0626 49 1 12.0488 3.5618 0.1467 50 1 15.3508 5.0436 -2.0208 51 1 9.8916 3.9915 -1.0900 52 1 9.7220 5.4614 -2.0792 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397657225.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:12 Heat of formation + Delta-G solvation = -72.736851 kcal Electronic energy + Delta-G solvation = -22104.444098 eV Core-core repulsion = 19100.714882 eV Total energy + Delta-G solvation = -3003.729216 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.11124 -37.86252 -36.48283 -35.27218 -33.89149 -32.24706 -31.67832 -29.46986 -26.95701 -26.71442 -24.82605 -23.25498 -22.81882 -22.18373 -21.74124 -21.57156 -19.90839 -18.42700 -17.08720 -16.82519 -16.32940 -16.14083 -15.70926 -15.32807 -15.07544 -15.00594 -14.70213 -14.48496 -14.26812 -14.07425 -13.72024 -13.61611 -13.36845 -13.02609 -12.88674 -12.76693 -12.61669 -12.59164 -12.46819 -12.30997 -11.97506 -11.95136 -11.83867 -11.72566 -11.71501 -11.49527 -11.40608 -11.32756 -11.24773 -11.11093 -10.82478 -10.64951 -10.38166 -9.00695 -8.08228 -6.22466 1.39226 1.40658 1.52210 2.42244 3.18234 3.20974 3.67710 3.94587 4.05093 4.07725 4.13430 4.21933 4.25188 4.30143 4.31698 4.38497 4.49706 4.54700 4.61315 4.65395 4.68377 4.76302 4.80801 4.84551 4.88295 4.90196 4.94030 4.97635 5.02995 5.06451 5.09134 5.12582 5.17804 5.19620 5.21844 5.23733 5.29908 5.37767 5.39846 5.42861 5.48804 5.52869 5.54605 5.56232 5.63526 5.97689 6.13977 6.22669 6.42994 6.47612 6.90536 7.45271 8.96542 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.019493 B = 0.002529 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.103806 B =11069.607591 C =12077.442863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.128 4.128 3 C -0.118 4.118 4 C -0.120 4.120 5 C -0.114 4.114 6 C -0.119 4.119 7 C -0.106 4.106 8 C -0.151 4.151 9 C 0.057 3.943 10 N -0.552 5.552 11 C 0.066 3.934 12 C -0.113 4.113 13 C -0.103 4.103 14 C 0.049 3.951 15 H -0.006 1.006 16 C -0.534 4.534 17 H 0.050 0.950 18 C 0.012 3.988 19 N -0.915 5.915 20 Si 0.955 3.045 21 H -0.268 1.268 22 H -0.280 1.280 23 H -0.280 1.280 24 C 0.084 3.916 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.049 0.951 37 H 0.057 0.943 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.045 0.955 41 H 0.056 0.944 42 H 0.087 0.913 43 H 0.070 0.930 44 H 0.028 0.972 45 H 0.087 0.913 46 H 0.069 0.931 47 H 0.049 0.951 48 H 0.057 0.943 49 H 0.021 0.979 50 H 0.260 0.740 51 H 0.019 0.981 52 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.665 -5.702 6.925 25.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C -0.155 4.155 4 C -0.158 4.158 5 C -0.151 4.151 6 C -0.156 4.156 7 C -0.144 4.144 8 C -0.191 4.191 9 C -0.071 4.071 10 N -0.275 5.275 11 C -0.061 4.061 12 C -0.151 4.151 13 C -0.141 4.141 14 C 0.030 3.970 15 H 0.012 0.988 16 C -0.573 4.573 17 H 0.068 0.932 18 C -0.187 4.187 19 N -0.555 5.555 20 Si 0.780 3.220 21 H -0.192 1.192 22 H -0.206 1.206 23 H -0.205 1.205 24 C -0.044 4.044 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.091 0.909 39 H 0.081 0.919 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.105 0.895 43 H 0.088 0.912 44 H 0.046 0.954 45 H 0.105 0.895 46 H 0.087 0.913 47 H 0.068 0.932 48 H 0.076 0.924 49 H 0.039 0.961 50 H 0.069 0.931 51 H 0.038 0.962 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -23.320 -5.163 6.915 24.866 hybrid contribution 0.725 -1.277 -0.910 1.727 sum -22.595 -6.440 6.005 24.250 Atomic orbital electron populations 1.21782 0.95442 1.01873 1.01934 1.21561 0.96284 0.96839 1.01861 1.21604 0.94933 0.96877 1.02090 1.21609 0.95730 0.96730 1.01726 1.21558 0.94473 0.96889 1.02223 1.21586 0.96008 0.96617 1.01418 1.21455 0.93419 0.97044 1.02472 1.22187 0.97246 0.98413 1.01206 1.22276 0.86153 0.95777 1.02872 1.62145 1.07788 1.54911 1.02676 1.22016 0.94915 0.97260 0.91943 1.21615 0.95252 1.00149 0.98071 1.21444 1.01384 0.96375 0.94878 1.18631 0.90412 0.94617 0.93334 0.98754 1.21542 0.92522 1.31850 1.11387 0.93184 1.25742 0.97421 0.96419 0.99078 1.70045 1.03216 1.43501 1.38722 0.85560 0.78319 0.78490 0.79609 1.19208 1.20574 1.20533 1.21923 0.96327 0.94350 0.91764 0.92548 0.92701 0.92453 0.92366 0.92138 0.91808 0.92094 0.92642 0.92221 0.91502 0.92026 0.93187 0.92418 0.90930 0.91862 0.93661 0.92489 0.89498 0.91181 0.95352 0.89474 0.91276 0.93214 0.92441 0.96051 0.93075 0.96246 0.93122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.91 71.98 0.71 -0.92 16 2 C -0.13 -1.57 5.93 30.59 0.18 -1.39 16 3 C -0.12 -1.52 5.21 30.59 0.16 -1.36 16 4 C -0.12 -1.78 5.21 30.59 0.16 -1.62 16 5 C -0.11 -1.77 5.21 30.59 0.16 -1.61 16 6 C -0.12 -2.23 5.21 30.59 0.16 -2.08 16 7 C -0.11 -2.10 5.21 30.59 0.16 -1.94 16 8 C -0.15 -3.92 4.52 30.59 0.14 -3.78 16 9 C 0.06 1.60 5.36 86.30 0.46 2.06 16 10 N -0.55 -20.27 4.86 -896.36 -4.35 -24.63 16 11 C 0.07 2.26 5.05 86.32 0.44 2.69 16 12 C -0.11 -4.46 6.09 30.65 0.19 -4.28 16 13 C -0.10 -5.07 5.02 30.68 0.15 -4.91 16 14 C 0.05 2.57 2.26 -11.49 -0.03 2.55 16 15 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 16 C -0.53 -30.47 8.56 25.60 0.22 -30.25 16 17 H 0.05 2.81 7.74 -2.91 -0.02 2.78 16 18 C 0.01 0.68 5.30 84.65 0.45 1.13 16 19 N -0.92 -54.23 11.35 21.45 0.24 -53.98 16 20 Si 0.95 44.57 29.54 68.60 2.03 46.60 16 21 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 22 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 23 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 24 C 0.08 3.67 4.06 86.33 0.35 4.02 16 25 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 27 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 32 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 33 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 34 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 36 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 38 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 40 H 0.04 1.37 6.50 -2.39 -0.02 1.36 16 41 H 0.06 1.51 6.68 -2.38 -0.02 1.50 16 42 H 0.09 2.08 8.06 -2.39 -0.02 2.06 16 43 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.03 0.96 6.75 -2.39 -0.02 0.94 16 45 H 0.09 2.46 8.06 -2.38 -0.02 2.44 16 46 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 47 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 48 H 0.06 3.20 6.15 -2.39 -0.01 3.19 16 49 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 50 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 51 H 0.02 0.85 6.61 -2.39 -0.02 0.84 16 52 H 0.05 2.23 8.12 -2.39 -0.02 2.21 16 Total: -1.00 -61.12 391.05 2.78 -58.34 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: 0.80 Total: 15.35 kcal Atomic # 6 Polarization: -45.74 SS G_CDS: 4.06 Total: -41.68 kcal Atomic # 7 Polarization: -74.50 SS G_CDS: -4.11 Total: -78.61 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -61.12 2.78 -58.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397657225.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.398 kcal (2) G-P(sol) polarization free energy of solvation -61.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds