Wall clock time and date at job start Tue Mar 31 2020 05:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.46959 * 2 1 4 4 C 1.53006 * 109.46595 * 185.40736 * 3 2 1 5 5 H 1.09006 * 109.46884 * 303.96697 * 4 3 2 6 6 N 1.46895 * 109.47466 * 63.96890 * 4 3 2 7 7 C 1.46898 * 111.00050 * 261.25810 * 6 4 3 8 8 C 1.53004 * 109.47377 * 174.59056 * 7 6 4 9 9 C 1.52997 * 109.46809 * 59.99981 * 8 7 6 10 10 C 1.53004 * 109.47090 * 300.00115 * 8 7 6 11 11 C 1.52996 * 109.47284 * 180.02562 * 8 7 6 12 12 C 1.50698 * 109.47140 * 180.02562 * 11 8 7 13 13 H 1.08007 * 120.00012 * 359.97438 * 12 11 8 14 14 C 1.37878 * 120.00053 * 180.02562 * 12 11 8 15 15 N 1.31522 * 120.00013 * 179.97438 * 14 12 11 16 16 Si 1.86797 * 120.00244 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.46933 * 89.99804 * 16 14 12 18 18 H 1.48488 * 109.47387 * 210.00300 * 16 14 12 19 19 H 1.48510 * 109.46730 * 330.00530 * 16 14 12 20 20 C 1.52995 * 109.47029 * 183.97064 * 4 3 2 21 21 H 1.08999 * 115.55337 * 34.32492 * 20 4 3 22 22 C 1.53005 * 117.49766 * 248.62148 * 20 4 3 23 23 C 1.52998 * 117.49966 * 179.97438 * 20 4 3 24 24 C 1.53002 * 117.50111 * 214.97487 * 23 20 4 25 25 C 1.52999 * 117.49804 * 359.97438 * 23 20 4 26 26 H 1.09006 * 109.46840 * 300.00781 * 1 2 3 27 27 H 1.08999 * 109.46922 * 59.99909 * 1 2 3 28 28 H 1.08999 * 109.47418 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.46678 * 239.99646 * 2 1 3 30 30 H 1.09004 * 109.46644 * 119.99695 * 2 1 3 31 31 H 1.08999 * 109.47719 * 65.40900 * 3 2 1 32 32 H 1.08999 * 109.47209 * 305.39775 * 3 2 1 33 33 H 1.00907 * 110.99760 * 25.20958 * 6 4 3 34 34 H 1.08999 * 109.47270 * 54.59124 * 7 6 4 35 35 H 1.09002 * 109.47373 * 294.59447 * 7 6 4 36 36 H 1.09000 * 109.47175 * 180.02562 * 9 8 7 37 37 H 1.09003 * 109.47252 * 299.99992 * 9 8 7 38 38 H 1.08994 * 109.47441 * 60.00417 * 9 8 7 39 39 H 1.08999 * 109.47026 * 299.99607 * 10 8 7 40 40 H 1.09003 * 109.47188 * 59.99874 * 10 8 7 41 41 H 1.09000 * 109.47211 * 179.97438 * 10 8 7 42 42 H 1.08999 * 109.47348 * 60.00077 * 11 8 7 43 43 H 1.09004 * 109.46725 * 300.00014 * 11 8 7 44 44 H 0.96998 * 120.00094 * 179.97438 * 15 14 12 45 45 H 1.08997 * 117.49648 * 359.97438 * 22 20 4 46 46 H 1.09000 * 117.49686 * 145.01943 * 22 20 4 47 47 H 1.09004 * 109.46776 * 60.00361 * 24 23 20 48 48 H 1.08998 * 109.47496 * 179.97438 * 24 23 20 49 49 H 1.08998 * 109.47222 * 300.00319 * 24 23 20 50 50 H 1.08998 * 109.47112 * 60.00137 * 25 23 20 51 51 H 1.09000 * 109.47041 * 179.97438 * 25 23 20 52 52 H 1.08997 * 109.47402 * 299.99623 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5640 1.4445 -0.1359 5 1 4.0008 0.8443 0.6623 6 7 3.9404 0.8768 -1.4374 7 6 4.3276 -0.5340 -1.3042 8 6 4.5818 -1.1263 -2.6919 9 6 5.7078 -0.3510 -3.3788 10 6 3.3067 -1.0246 -3.5312 11 6 4.9846 -2.5958 -2.5531 12 6 5.2355 -3.1790 -3.9198 13 1 5.1190 -2.5633 -4.7995 14 6 5.6129 -4.4990 -4.0474 15 7 5.8314 -5.0082 -5.2402 16 14 5.8138 -5.5643 -2.5261 17 1 4.5212 -6.2229 -2.2089 18 1 6.8478 -6.5994 -2.7797 19 1 6.2319 -4.7170 -1.3803 20 6 4.0830 2.8804 -0.0366 21 1 3.5309 3.5341 0.6386 22 6 4.6740 3.5070 -1.3012 23 6 5.5936 3.0949 -0.1492 24 6 6.2134 4.2113 0.6937 25 6 6.4698 1.8572 -0.3519 26 1 -0.3633 0.5140 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.7580 1.9277 0.9344 32 1 1.5999 1.9835 -0.8377 33 1 3.1946 0.9852 -2.1085 34 1 3.5255 -1.0863 -0.8148 35 1 5.2361 -0.6065 -0.7062 36 1 5.8886 -0.7727 -4.3675 37 1 5.4205 0.6958 -3.4777 38 1 6.6162 -0.4235 -2.7809 39 1 2.5045 -1.5769 -3.0418 40 1 3.0193 0.0222 -3.6301 41 1 3.4879 -1.4462 -4.5199 42 1 4.1821 -3.1479 -2.0639 43 1 5.8929 -2.6686 -1.9550 44 1 6.0973 -5.9367 -5.3299 45 1 4.6935 2.8961 -2.2037 46 1 4.5107 4.5732 -1.4581 47 1 6.0284 4.0145 1.7498 48 1 7.2879 4.2483 0.5143 49 1 5.7655 5.1660 0.4181 50 1 6.1807 1.3546 -1.2749 51 1 7.5154 2.1585 -0.4149 52 1 6.3375 1.1767 0.4892 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000417349396.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:17 Heat of formation + Delta-G solvation = -9.763474 kcal Electronic energy + Delta-G solvation = -24173.050974 eV Core-core repulsion = 21172.052489 eV Total energy + Delta-G solvation = -3000.998486 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.54645 -37.31141 -35.63105 -32.95507 -32.00015 -29.75162 -28.11820 -27.43410 -27.32779 -26.32970 -25.12708 -23.94861 -21.98521 -21.19342 -19.96322 -18.54390 -17.76121 -16.78460 -15.82646 -15.57542 -15.02575 -14.33319 -13.99805 -13.97438 -13.76437 -13.55470 -13.36137 -13.05953 -12.95447 -12.57821 -12.33100 -12.22398 -12.07429 -12.06872 -11.73918 -11.64907 -11.34526 -11.24008 -11.10734 -10.98336 -10.96404 -10.83228 -10.70141 -10.65146 -10.41172 -10.24923 -9.75700 -9.65895 -9.64046 -9.25740 -9.23256 -8.86967 -8.48480 -7.99448 -5.98914 -3.94844 3.32468 3.40555 3.44056 3.85948 4.46769 4.49247 4.60678 4.92120 4.96584 5.05359 5.07003 5.10117 5.28247 5.34282 5.44564 5.45494 5.57685 5.63609 5.67756 5.70955 5.75889 5.78605 5.86355 5.88566 5.94204 5.97878 6.04018 6.06062 6.15008 6.18397 6.24490 6.26441 6.27333 6.30994 6.36962 6.44912 6.52299 6.60386 6.70225 6.80083 6.81540 7.09953 7.16244 7.21958 7.35010 7.40331 7.49363 7.74074 7.87196 8.61015 9.07232 9.64508 11.14252 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.016047 B = 0.004909 C = 0.004237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.489267 B = 5702.287717 C = 6606.434194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.135 4.135 3 C -0.137 4.137 4 C 0.116 3.884 5 H 0.071 0.929 6 N -0.675 5.675 7 C 0.060 3.940 8 C -0.049 4.049 9 C -0.118 4.118 10 C -0.130 4.130 11 C -0.004 4.004 12 C -0.506 4.506 13 H 0.077 0.923 14 C 0.065 3.935 15 N -0.906 5.906 16 Si 0.874 3.126 17 H -0.280 1.280 18 H -0.290 1.290 19 H -0.267 1.267 20 C -0.142 4.142 21 H 0.093 0.907 22 C -0.156 4.156 23 C -0.119 4.119 24 C -0.115 4.115 25 C -0.118 4.118 26 H 0.049 0.951 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.073 0.927 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.340 0.660 34 H 0.030 0.970 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.044 0.956 38 H 0.039 0.961 39 H 0.039 0.961 40 H 0.035 0.965 41 H 0.069 0.931 42 H 0.007 0.993 43 H 0.014 0.986 44 H 0.261 0.739 45 H 0.113 0.887 46 H 0.076 0.924 47 H 0.052 0.948 48 H 0.056 0.944 49 H 0.050 0.950 50 H 0.092 0.908 51 H 0.043 0.957 52 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.803 16.237 11.964 20.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.173 4.173 3 C -0.176 4.176 4 C 0.006 3.994 5 H 0.090 0.910 6 N -0.307 5.307 7 C -0.069 4.069 8 C -0.049 4.049 9 C -0.175 4.175 10 C -0.188 4.188 11 C -0.041 4.041 12 C -0.544 4.544 13 H 0.095 0.905 14 C -0.135 4.135 15 N -0.546 5.546 16 Si 0.702 3.298 17 H -0.206 1.206 18 H -0.216 1.216 19 H -0.191 1.191 20 C -0.161 4.161 21 H 0.111 0.889 22 C -0.193 4.193 23 C -0.119 4.119 24 C -0.172 4.172 25 C -0.175 4.175 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.161 0.839 34 H 0.048 0.952 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.054 0.946 41 H 0.087 0.913 42 H 0.025 0.975 43 H 0.032 0.968 44 H 0.071 0.929 45 H 0.131 0.869 46 H 0.094 0.906 47 H 0.071 0.929 48 H 0.075 0.925 49 H 0.069 0.931 50 H 0.111 0.889 51 H 0.062 0.938 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.101 16.297 11.904 20.816 hybrid contribution -0.805 -1.156 1.048 1.756 sum -5.906 15.141 12.952 20.782 Atomic orbital electron populations 1.21750 0.96020 1.01538 1.01376 1.21746 0.95836 0.96971 1.02712 1.22219 0.96517 0.96797 1.02077 1.20962 0.92331 0.93658 0.92466 0.91042 1.60693 1.44240 1.17630 1.08108 1.22350 0.99362 0.86748 0.98416 1.20418 0.95464 0.96799 0.92210 1.21637 0.96964 0.98051 1.00870 1.21792 0.96665 0.98577 1.01742 1.19614 0.95566 0.91033 0.97925 1.21141 1.45167 0.95889 0.92174 0.90464 1.25011 0.95150 0.97985 0.95400 1.69911 1.48160 1.14377 1.22123 0.86864 0.77931 0.80487 0.84475 1.20565 1.21592 1.19137 1.22468 0.95256 0.96760 1.01648 0.88887 1.23161 1.02913 0.99275 0.93982 1.21416 0.91201 0.97957 1.01325 1.21369 1.00378 0.96580 0.98886 1.21470 0.97119 0.95342 1.03527 0.93189 0.92825 0.92829 0.90820 0.92284 0.92074 0.91733 0.83931 0.95159 0.91657 0.92233 0.93703 0.94152 0.94192 0.94647 0.91252 0.97518 0.96788 0.92928 0.86897 0.90596 0.92910 0.92471 0.93080 0.88924 0.93785 0.93605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.91 37.16 0.37 -1.10 16 2 C -0.14 -1.47 5.06 -26.73 -0.14 -1.61 16 3 C -0.14 -1.38 4.53 -26.73 -0.12 -1.50 16 4 C 0.12 1.30 1.92 -67.71 -0.13 1.17 16 5 H 0.07 0.88 7.54 -51.93 -0.39 0.49 16 6 N -0.67 -8.39 1.91 -106.72 -0.20 -8.59 16 7 C 0.06 0.90 3.37 -3.82 -0.01 0.89 16 8 C -0.05 -0.89 0.60 -154.51 -0.09 -0.98 16 9 C -0.12 -2.16 7.42 37.16 0.28 -1.88 16 10 C -0.13 -2.30 7.90 37.16 0.29 -2.00 16 11 C 0.00 -0.08 3.11 -27.89 -0.09 -0.17 16 12 C -0.51 -13.78 8.20 -34.44 -0.28 -14.06 16 13 H 0.08 2.25 5.92 -52.48 -0.31 1.94 16 14 C 0.06 1.86 5.47 -17.82 -0.10 1.77 16 15 N -0.91 -27.70 13.96 55.43 0.77 -26.92 16 16 Si 0.87 21.74 27.47 -169.99 -4.67 17.07 16 17 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 19 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 20 C -0.14 -1.53 5.43 -90.62 -0.49 -2.02 16 21 H 0.09 0.94 8.11 -51.93 -0.42 0.52 16 22 C -0.16 -1.74 9.16 -26.70 -0.24 -1.99 16 23 C -0.12 -1.34 2.70 -154.48 -0.42 -1.75 16 24 C -0.11 -1.12 9.85 37.16 0.37 -0.76 16 25 C -0.12 -1.48 8.26 37.16 0.31 -1.18 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.92 5.55 -51.93 -0.29 0.63 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.65 8.05 -51.93 -0.42 0.24 16 33 H 0.34 4.27 5.91 -39.29 -0.23 4.04 16 34 H 0.03 0.46 5.54 -51.93 -0.29 0.18 16 35 H 0.07 1.04 7.46 -51.93 -0.39 0.66 16 36 H 0.06 1.24 6.62 -51.93 -0.34 0.89 16 37 H 0.04 0.72 7.60 -51.93 -0.39 0.33 16 38 H 0.04 0.74 8.07 -51.93 -0.42 0.32 16 39 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.03 0.52 6.45 -51.93 -0.33 0.19 16 41 H 0.07 1.41 6.62 -51.93 -0.34 1.06 16 42 H 0.01 0.15 7.57 -51.93 -0.39 -0.24 16 43 H 0.01 0.33 7.20 -51.93 -0.37 -0.04 16 44 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 45 H 0.11 1.41 6.86 -51.93 -0.36 1.05 16 46 H 0.08 0.78 8.05 -51.93 -0.42 0.36 16 47 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.06 0.54 7.92 -51.93 -0.41 0.13 16 49 H 0.05 0.46 7.90 -51.93 -0.41 0.05 16 50 H 0.09 1.30 4.96 -51.93 -0.26 1.04 16 51 H 0.04 0.53 7.92 -51.93 -0.41 0.12 16 52 H 0.04 0.59 8.02 -51.93 -0.42 0.17 16 LS Contribution 378.14 15.07 5.70 5.70 Total: -1.00 -27.91 378.14 -9.05 -36.96 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -10.15 Total: 2.97 kcal Atomic # 6 Polarization: -26.69 SS G_CDS: -0.50 Total: -27.19 kcal Atomic # 7 Polarization: -36.08 SS G_CDS: 0.57 Total: -35.51 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.67 Total: 17.07 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -27.91 -9.05 -36.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000417349396.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.195 kcal (2) G-P(sol) polarization free energy of solvation -27.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds