Wall clock time and date at job start Tue Mar 31 2020 05:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47480 * 2 1 4 4 C 1.52997 * 109.47076 * 239.99922 * 2 1 3 5 5 C 1.50696 * 109.47123 * 60.00356 * 4 2 1 6 6 H 1.08000 * 120.00247 * 359.97438 * 5 4 2 7 7 C 1.37876 * 119.99806 * 180.02562 * 5 4 2 8 8 N 1.31520 * 119.99911 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 120.00188 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.46907 * 90.00198 * 9 7 5 11 11 H 1.48503 * 109.47283 * 210.00180 * 9 7 5 12 12 H 1.48503 * 109.47116 * 330.00257 * 9 7 5 13 13 C 1.53005 * 109.46988 * 119.99799 * 2 1 3 14 14 N 1.46905 * 109.47187 * 296.55803 * 13 2 1 15 15 C 1.46881 * 110.97372 * 208.93556 * 14 13 2 16 16 C 1.52690 * 109.64919 * 170.93105 * 15 14 13 17 17 C 1.53162 * 109.59702 * 289.11193 * 16 15 14 18 18 C 1.54192 * 107.98806 * 172.01000 * 16 15 14 19 19 C 1.51984 * 112.05026 * 52.73208 * 16 15 14 20 20 C 1.51975 * 115.28790 * 318.68900 * 19 16 15 21 21 C 1.53173 * 110.94288 * 278.31807 * 20 19 16 22 22 C 1.54197 * 108.35139 * 160.25771 * 20 19 16 23 23 C 1.46867 * 110.98035 * 86.96014 * 14 13 2 24 24 H 1.09000 * 109.47455 * 310.48859 * 1 2 3 25 25 H 1.08995 * 109.46884 * 70.48907 * 1 2 3 26 26 H 1.08999 * 109.47417 * 190.49093 * 1 2 3 27 27 H 1.08997 * 109.47552 * 175.45466 * 3 2 1 28 28 H 1.08999 * 109.47106 * 295.46234 * 3 2 1 29 29 H 1.09001 * 109.46766 * 55.45218 * 3 2 1 30 30 H 1.09011 * 109.46852 * 179.97438 * 4 2 1 31 31 H 1.09003 * 109.47444 * 299.99550 * 4 2 1 32 32 H 0.97000 * 120.00036 * 179.97438 * 8 7 5 33 33 H 1.09004 * 109.46574 * 176.55761 * 13 2 1 34 34 H 1.09003 * 109.46995 * 56.56108 * 13 2 1 35 35 H 1.09072 * 109.36041 * 291.13136 * 15 14 13 36 36 H 1.09069 * 109.35098 * 50.72164 * 15 14 13 37 37 H 1.08997 * 109.47627 * 184.26958 * 17 16 15 38 38 H 1.09006 * 109.46846 * 304.26801 * 17 16 15 39 39 H 1.08997 * 109.47221 * 64.26137 * 17 16 15 40 40 H 1.09005 * 109.46857 * 298.41453 * 18 16 15 41 41 H 1.08995 * 109.47270 * 58.41654 * 18 16 15 42 42 H 1.09001 * 109.47237 * 178.42032 * 18 16 15 43 43 H 1.10124 * 108.73834 * 196.30376 * 19 16 15 44 44 H 1.10160 * 108.68857 * 80.97652 * 19 16 15 45 45 H 1.09000 * 109.46933 * 184.33176 * 21 20 19 46 46 H 1.08998 * 109.46924 * 304.32521 * 21 20 19 47 47 H 1.08998 * 109.47431 * 64.32638 * 21 20 19 48 48 H 1.08995 * 109.47151 * 298.37814 * 22 20 19 49 49 H 1.09006 * 109.47250 * 58.38046 * 22 20 19 50 50 H 1.08997 * 109.47000 * 178.38042 * 22 20 19 51 51 H 1.09086 * 109.33262 * 309.17064 * 23 14 13 52 52 H 1.09075 * 109.36065 * 68.71715 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5377 -0.0108 -2.4796 6 1 0.9165 0.8671 -2.3806 7 6 1.8704 -0.4822 -3.7319 8 7 1.4316 0.1375 -4.8058 9 14 2.9442 -2.0011 -3.9033 10 1 2.0856 -3.2119 -3.9481 11 1 3.7358 -1.9089 -5.1564 12 1 3.8650 -2.0900 -2.7415 13 6 2.0399 -0.7212 1.2493 14 7 1.6193 0.0177 2.4473 15 6 2.5742 -0.1756 3.5465 16 6 2.2361 0.7741 4.6933 17 6 2.5758 2.2113 4.2872 18 6 3.1259 0.4032 5.8967 19 6 0.7818 0.6591 5.1195 20 6 -0.2192 0.5283 3.9834 21 6 -0.5515 1.8991 3.3860 22 6 -1.5240 -0.0648 4.5519 23 6 0.2808 -0.4029 2.8816 24 1 -0.3634 0.6672 0.7816 25 1 -0.3633 0.3432 -0.9686 26 1 -0.3634 -1.0105 0.1871 27 1 3.1270 1.4436 0.0814 28 1 1.7446 1.9323 -0.9278 29 1 1.6117 1.9793 0.8465 30 1 3.1300 -0.7208 -1.2494 31 1 1.6767 -1.7490 -1.2492 32 1 1.6659 -0.1939 -5.6868 33 1 3.1282 -0.7749 1.2189 34 1 1.6271 -1.7296 1.2807 35 1 2.5183 -1.2070 3.8969 36 1 3.5840 0.0281 3.1880 37 1 2.4052 2.8778 5.1327 38 1 3.6221 2.2662 3.9866 39 1 1.9419 2.5127 3.4533 40 1 2.9081 -0.6183 6.2085 41 1 4.1748 0.4799 5.6104 42 1 2.9238 1.0859 6.7221 43 1 0.5191 1.5421 5.7228 44 1 0.6768 -0.2126 5.7848 45 1 -1.3263 1.7867 2.6276 46 1 -0.9081 2.5621 4.1742 47 1 0.3434 2.3238 2.9312 48 1 -1.3255 -1.0565 4.9583 49 1 -1.9033 0.5827 5.3426 50 1 -2.2657 -0.1398 3.7567 51 1 -0.4028 -0.3651 2.0324 52 1 0.3279 -1.4250 3.2596 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000468684459.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:55 Heat of formation + Delta-G solvation = -41.699643 kcal Electronic energy + Delta-G solvation = -24770.412719 eV Core-core repulsion = 21768.029377 eV Total energy + Delta-G solvation = -3002.383342 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.14416 -38.53511 -35.81710 -35.31745 -33.99897 -29.74925 -28.56130 -28.48089 -27.67441 -27.38289 -27.33915 -26.88158 -24.78836 -22.77227 -20.71213 -19.56377 -18.85069 -18.62149 -16.74005 -16.35144 -16.16467 -15.95709 -15.31153 -15.24078 -15.00284 -14.80953 -14.57037 -14.22554 -14.10414 -13.97519 -13.62688 -13.30284 -13.02751 -12.88176 -12.83042 -12.79007 -12.73394 -12.58850 -12.41499 -12.29706 -12.18319 -12.09582 -11.94342 -11.74271 -11.64112 -11.45767 -11.36731 -11.25839 -11.19022 -10.84795 -10.82215 -10.68244 -10.48059 -9.05208 -8.20268 -6.19860 1.35359 1.37306 1.48348 2.40230 3.05802 3.14773 3.70988 3.90534 3.94768 4.08789 4.20692 4.24743 4.29630 4.36275 4.41224 4.50850 4.66680 4.70869 4.75382 4.77547 4.83882 4.86824 4.89310 4.92150 4.96267 4.97580 5.00110 5.04668 5.07835 5.10499 5.15037 5.17473 5.21174 5.24303 5.27504 5.37677 5.41122 5.44158 5.45918 5.50048 5.58006 5.59901 5.62690 5.69949 5.80301 5.84455 5.87470 6.28899 6.34326 6.46306 6.87205 7.42204 8.96030 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.024739 B = 0.004551 C = 0.004298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.544730 B = 6150.795456 C = 6513.408932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.039 4.039 3 C -0.102 4.102 4 C -0.003 4.003 5 C -0.500 4.500 6 H 0.044 0.956 7 C 0.002 3.998 8 N -0.955 5.955 9 Si 0.939 3.061 10 H -0.271 1.271 11 H -0.288 1.288 12 H -0.250 1.250 13 C 0.071 3.929 14 N -0.517 5.517 15 C 0.063 3.937 16 C -0.050 4.050 17 C -0.133 4.133 18 C -0.140 4.140 19 C -0.089 4.089 20 C -0.050 4.050 21 C -0.135 4.135 22 C -0.142 4.142 23 C 0.046 3.954 24 H 0.069 0.931 25 H 0.031 0.969 26 H 0.041 0.959 27 H 0.035 0.965 28 H 0.024 0.976 29 H 0.065 0.935 30 H 0.011 0.989 31 H 0.008 0.992 32 H 0.262 0.738 33 H 0.064 0.936 34 H 0.031 0.969 35 H 0.027 0.973 36 H 0.067 0.933 37 H 0.055 0.945 38 H 0.045 0.955 39 H 0.058 0.942 40 H 0.053 0.947 41 H 0.055 0.945 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.057 0.943 45 H 0.042 0.958 46 H 0.057 0.943 47 H 0.060 0.940 48 H 0.053 0.947 49 H 0.065 0.935 50 H 0.051 0.949 51 H 0.083 0.917 52 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.202 -0.245 24.775 24.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.039 4.039 3 C -0.160 4.160 4 C -0.041 4.041 5 C -0.538 4.538 6 H 0.063 0.937 7 C -0.194 4.194 8 N -0.597 5.597 9 Si 0.764 3.236 10 H -0.197 1.197 11 H -0.214 1.214 12 H -0.174 1.174 13 C -0.057 4.057 14 N -0.240 5.240 15 C -0.065 4.065 16 C -0.050 4.050 17 C -0.190 4.190 18 C -0.198 4.198 19 C -0.126 4.126 20 C -0.050 4.050 21 C -0.192 4.192 22 C -0.200 4.200 23 C -0.082 4.082 24 H 0.088 0.912 25 H 0.051 0.949 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.043 0.957 29 H 0.084 0.916 30 H 0.030 0.970 31 H 0.026 0.974 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.049 0.951 35 H 0.045 0.955 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.064 0.936 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.076 0.924 45 H 0.061 0.939 46 H 0.076 0.924 47 H 0.079 0.921 48 H 0.072 0.928 49 H 0.084 0.916 50 H 0.071 0.929 51 H 0.101 0.899 52 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -0.204 0.253 24.494 24.496 hybrid contribution 0.408 -1.521 -0.886 1.807 sum 0.205 -1.269 23.608 23.643 Atomic orbital electron populations 1.21888 0.95441 1.00149 1.00528 1.20246 0.95350 0.95824 0.92518 1.21450 0.99143 0.95598 0.99773 1.19597 0.95606 0.95217 0.93705 1.21417 1.29930 1.12023 0.90438 0.93740 1.25896 0.97581 1.00134 0.95769 1.70067 1.48374 1.42847 0.98410 0.85821 0.79758 0.80121 0.77881 1.19683 1.21448 1.17415 1.22121 0.99312 0.94261 0.89968 1.62313 1.02311 1.55668 1.03664 1.22242 0.95796 0.97072 0.91391 1.20376 0.95115 0.95548 0.93999 1.21908 1.00913 0.94916 1.01303 1.22156 0.99237 1.01276 0.97114 1.21342 0.92601 1.02262 0.96440 1.20373 0.95007 0.95491 0.94143 1.21935 1.01255 0.95861 1.00104 1.22172 0.96314 1.00590 1.00884 1.22614 0.91332 0.95713 0.98500 0.91225 0.94942 0.93976 0.94563 0.95651 0.91628 0.97024 0.97360 0.92946 0.91787 0.95081 0.95506 0.91484 0.92560 0.93562 0.92299 0.92831 0.92621 0.91745 0.91520 0.92441 0.93851 0.92444 0.92118 0.92802 0.91627 0.92938 0.89928 0.95842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.60 6.79 71.98 0.49 -4.11 16 2 C -0.04 -1.48 0.60 -52.18 -0.03 -1.51 16 3 C -0.10 -3.93 8.02 71.98 0.58 -3.35 16 4 C 0.00 -0.16 3.11 29.85 0.09 -0.07 16 5 C -0.50 -28.43 8.00 25.60 0.20 -28.22 16 6 H 0.04 2.78 6.00 -2.91 -0.02 2.76 16 7 C 0.00 0.10 5.47 84.65 0.46 0.57 16 8 N -0.95 -60.59 13.96 21.45 0.30 -60.29 16 9 Si 0.94 45.26 27.47 68.60 1.88 47.15 16 10 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 11 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 12 H -0.25 -11.29 6.54 99.48 0.65 -10.64 16 13 C 0.07 2.24 4.21 86.30 0.36 2.60 16 14 N -0.52 -13.41 3.25 -897.17 -2.91 -16.32 16 15 C 0.06 1.40 3.99 86.20 0.34 1.75 16 16 C -0.05 -0.91 0.76 -52.16 -0.04 -0.95 16 17 C -0.13 -2.57 8.11 72.04 0.58 -1.98 16 18 C -0.14 -2.10 8.15 72.39 0.59 -1.51 16 19 C -0.09 -1.55 3.63 29.92 0.11 -1.44 16 20 C -0.05 -0.98 0.76 -52.16 -0.04 -1.02 16 21 C -0.13 -2.82 8.01 72.04 0.58 -2.24 16 22 C -0.14 -2.41 8.13 72.39 0.59 -1.82 16 23 C 0.05 1.11 3.40 86.20 0.29 1.41 16 24 H 0.07 2.28 6.04 -2.39 -0.01 2.27 16 25 H 0.03 1.43 6.34 -2.39 -0.02 1.41 16 26 H 0.04 1.48 7.66 -2.39 -0.02 1.46 16 27 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.02 1.12 6.48 -2.39 -0.02 1.10 16 29 H 0.06 2.24 7.64 -2.39 -0.02 2.22 16 30 H 0.01 0.54 7.20 -2.38 -0.02 0.53 16 31 H 0.01 0.38 7.57 -2.39 -0.02 0.36 16 32 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 33 H 0.06 1.99 7.58 -2.38 -0.02 1.97 16 34 H 0.03 0.97 7.82 -2.39 -0.02 0.95 16 35 H 0.03 0.60 7.96 -2.35 -0.02 0.58 16 36 H 0.07 1.55 7.76 -2.35 -0.02 1.53 16 37 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.05 0.91 8.13 -2.38 -0.02 0.89 16 39 H 0.06 1.33 5.39 -2.39 -0.01 1.32 16 40 H 0.05 0.77 8.06 -2.38 -0.02 0.76 16 41 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.07 1.06 7.90 -1.79 -0.01 1.05 16 44 H 0.06 0.94 7.60 -1.77 -0.01 0.93 16 45 H 0.04 0.97 8.01 -2.39 -0.02 0.95 16 46 H 0.06 1.03 8.08 -2.39 -0.02 1.01 16 47 H 0.06 1.44 5.42 -2.39 -0.01 1.43 16 48 H 0.05 0.87 8.10 -2.39 -0.02 0.85 16 49 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 50 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 51 H 0.08 2.22 4.07 -2.34 -0.01 2.21 16 52 H 0.02 0.57 7.96 -2.35 -0.02 0.55 16 Total: -1.00 -62.56 368.50 5.22 -57.33 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: 0.79 Total: 14.04 kcal Atomic # 6 Polarization: -47.08 SS G_CDS: 5.16 Total: -41.91 kcal Atomic # 7 Polarization: -73.99 SS G_CDS: -2.62 Total: -76.61 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 1.88 Total: 47.15 kcal Total: -62.56 5.22 -57.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000468684459.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.634 kcal (2) G-P(sol) polarization free energy of solvation -62.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds